Mousegenomes tk-wtsi (1)
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Mouse Genomes Project talk at IMGC 2014
Transcript of Mousegenomes tk-wtsi (1)
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Anthony Doran
129S5SvEvBrd
C57BL/6NJ
Genome Assembly
UCSC Gene Transmap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genomebrowsers
HAVANA/Gencode
Strain PE>40x 3kb 6kb 10kb 40kb 205kb Optical map
PacBio WGS
RNA-Seq PacBio cDNA
129S1/SvImJ
A/J
AKR/J
BALB/cJ
C3H/HeJ
C57BL/6NJ
CAST/EiJ
CBA/2J
DBA/2J
FVB/NJ
LP/J
NOD/ShiLtJ
NZO/HlLtJ
PWK/PhJ
SPRET/EiJ
WSB/EiJ
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Strain Length N50 Largest129S1/SvImJ 2,665,724,978 499,579 4,191,204A/J 2,575,552,050 841,310 5,154,006AKR/J 2,655,151,486 699,281 4,946,368BALB/cJ 2,564,864,798 719,223 6,377,193C3H/HeJ 2,652,482,740 830,262 5,460,279C57BL/6NJ 2,767,519,225 1,376,403 10,647,821CAST/EiJ 2,692,265,825 644,585 4,753,688CBA/J 2,869,046,919 1,001,488 6,693,851DBA/2J 2,535,344,396 497,937 5,792,774FVB/NJ 2,489,840,365 231,286 2,492,086LP/J 2,700,733,552 1,501,450 7,674,081NOD/ShiLtJ 2,916,136,958 833,100 7,603,243NZO/HlLtJ 2,629,894,720 455,398 3,441,695PWK/PhJ 2,536,513,388 390,965 4,057,411SPRET/EiJ 2,665,852,857 361,121 2,821,169WSB/EiJ 2,667,768,295 783,034 5,847,529
Genome Assembly
UCSC Gene Transmap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
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Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
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Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
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Mario StankeStefanie König
Mario StankeStefanie König
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
UCSCEnsembl
HAVANA/Gencode
RNA-Seq
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genomebrowsers
HAVANA/Gencode
RNA-Seq
Genome Assembly
UCSC Gene TransMap Augustus
Geneset Integration
Manual Annotation
Genome Alignments
UCSC/Sanger
UCSC University Greifswald
Genome browsers
HAVANA/Gencode
Ensembl/UCSC
RNA-Seq
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2014-2017
2015-2018
