Articles in scientific journals

1) Niyazova R., Berillo O., Atambayeva Sh. et al. miR-1322 binding sites in paralogousand orthologous genes. BioMed research international, 2015, 2015, P. 72) Ivashchenko A., Berillo O., Pyrkova A. et al. Binding sites of miR-1273 family on themRNA of target genes. Biomed research international, 2014, 2014, P. 620530. 3) Ivashchenko A., Berillo O., Pyrkova A. et al. The properties of binding sites of miR-619-5p, miR-5095, miR-5096 and miR-5585-3p in the mRNAs of human genes. Biomedresearch international, 2014, 2014, P. 720715.4) Ivashchenko A., Berillo O., Pyrkova A. et al. MiR-3960 binding sites with mRNA ofhuman genes. Bioinformation, 10(7), 2014, P. 423-427.5) Berillo O., Régnier M. and Ivashchenko A.T. TmiRUSite and TmiROSite scripts:searching for mRNA fragments with miRNA binding sites and their encoded for aminoacid sequences. Bioinformations, 10(7), 2014, 472-473.6) Berillo O., Régnier M. and Ivashchenko A. miRAFinder and GeneAFinder scripts:large-scale searching for miRNA and related information in indexed literature abstracts.Bioinformation. 2014, 10(8), P. 539-543. 7) Berillo O.A., Issabekova A.S., Régnier M. et al. Characteristics of binding sites ofintergenic, intronic and exonic miRNAs with mRNAs genes coding in-miRNAs. AfricanJournal of Biotechnology, 2013, 12(10), P. 1016-1024.8) Ivashchenko A.T., Issabekova A.S. and Berillo O.A. miR-1279, miR-548j, miR-548m,and miR-548d-5p binding sites in CDSs of paralogous and orthologous PTPN12, MSH6,and ZEB1 genes. Biomed research international, 2013, 902467, P. 1-8.9) Berillo O., Régnier M. and Ivashchenko A. Binding of intronic miRNAs with mRNAs ofgenes coding intronic microRNAs and proteins participating in tumourigenesis, Computersin Biology and Medicine, 2013, 43(10), P. 1374-1381.10) Issabekova A., Berillo O., Régnier M. et al. Interactions of intergenic microRNAswith mRNAs of genes involved in carcinogenesis. Bioinformation, 2012, 8(11), P. 513-518.11)Berillo O.A., Khailenko V.A., Ivashchenko A.T., Perlmuter-Shoshany L., Bolshoy A.miRNA and tropism of human parvovirus B19. Computational biology and chemistry, 2012,40, P. 1-6.

Articles in proceedings of conferences

1) Niyazova R.Y., Berillo O.A, Atambayeva S.A., Pyrkova A.Y., Ivashchenko A.T.Interactions between miRNAs and mRNAs of apoptosis genes in lung cancer. Proceedingsof the Moscow conference on computational molecular biology, Moscow, Russia, 2015, inpress.2) Ivashchenko A.T., Niyazova R.Y., Berillo O.A, et al. Features of miR-574-5p and miR-574-3p binding sites in mRNA of target genes. Proceedings of the Moscow conference oncomputational molecular biology, Moscow, Russia, 2015, in press.3) Niyazova R.Y., Berillo O.A, Atambayeva S.A., Ivashchenko A.T. The interaction ofmiRNAs with mRNAs of the cell cycle genes in lung cancer. Proceedings of the Moscowconference on computational molecular biology, Moscow, Russia, 2015, in press.4) Ivashchenko A.T., Berillo O.A., Pyrkova A.Y. et al. The arrangements of the locations ofmiR-619, miR-5095, miR-5096 and miR-5585 binding sites in the human mRNAs,Proceedings of the international conference on chemical engineering and materialsscience, Venice, Italy, 2014, P. 144-149.5) Ivashchenko A.T., Berillo O.A., Pyrkova A.Y. et al. Binding sites of the miR-1273 family,miR-1285-3р and miR-5684 in human mRNAs. Proceedings of the Internationalconference on chemical engineering and materials science, Venice, Italy, P. 102-107.6) Ivashchenko A., Berillo O., Pyrkova A. et al. The binding sites of miR-619-5p, miR-

5095, miR-5096 and miR-5585-3p in the human mRNAs. Proceedings of the Internationalwork-conference on bioinformatics and biomedical engineering, Granada, Spain, 2014, P.1674-1685.7) Berillo O.A., Baidildinova G.K. and Ivashchenko А.Т. MiRNAs as regulators of tumoursuppressor expression. Proceedings of the International conference on bioinformatics andbiomedicine, World academy of science, engineering and technology, Zurich, Switzerland,2013, 73(1), P. 82-86.8) Berillo O.A., Issabekova A.S. and Ivashchenko А.Т. Intragenic microRNAs bindingsites in mRNAs of genes involved in carcinogenesis. Proceedings of the Internationalconference on computer engineering and systems sciences. World academy of science,engineering and technology, Zurich, Switzerland, 2013, 73(5), P. 565-570.12) Berillo O.A., Bari A.A., Régnier M. et al. Evolutionary conservation of miRNAbinding sites in coding domains of orthologous APC2 mRNAs. World Academy of Science,Engineering and Technology, Prague, Czech Republic, 2013, 12(2), P. 256-261.13) Bari A.A., Berillo O.A., Orazova C.B. et al. Binding of miR398 to mRNA ofchaperone and superoxide dismutase genes in plants, World academy of science,engineering and technology, Prague, Czech Republic, 2013, 79, P. 252-255.14) Nabiyeva S. and Berillo O. miRNA binding sites in mRNAs of human tumorsuppressor genes. Vestnik KazNU al-Farabi, Seria biologicheskaja, 2013, 3/1(59), P. 277-280.9) Isabekova A., Berillo O., Khailenko V. et al. Characteristics of intronic and intergenichuman miRNAs and features of their with mRNA. World academy of science, engineeringand technology, Paris, France, 2011, 59, P. 63-66.

Theses

10)Alybaeva A., Berillo O., Niyazova R. et al. Binding sites of miRNAs with transcriptionfactors' genes of Camelus ferus. Proceedings of the IV Conference of ISOCARD “Silk roadcamel: the camelids, main stakes for sustainable development”, Almaty, Kazakhstan, 2015in press.11)Niyazova R.E., Berillo O.A., Atambaeva Sh.A. et al. The miR-3960, miR-3620-5p andmiR-8072 binding sites with mRNA of human genes participated in tumorigenesis.Proceedings of the Moscow international Congress “Biotechnology: state of the art andprospects of development” and the International conference “Biotechnology and quality oflife”, Moscow, Russia, 2014, P. 46.12) Ivashchenko A., Berillo O., Pyrkova A. et al. The binding sites of unique miRNAs inthe human mRNAs. Journal of Biotechnology, 185S, 2014, P. S37–S125.13) Niyazova R. , Berillo O., Atambayeva S. et al. Multiple binding sites miRNA in CDSof human mRNA. Journal of Biotechnology, 185S, 2014, P. S37–S125.14) Ivashchenko A.T., Berillo O.A., Pyrkova A.Y. et al. Features of interactions betweenmiR-1273 family and mRNA of target genes. Proceedings of the IX Internationalconference on bioinformatics of genome regulation and structure/systems biology,Novosibirsk, Russia, 2014, P. 69.15) Ivashchenko A.T., Berillo O.A., Pyrkova A.Y. et al. The features of binding sites ofmiR-619-5p, miR-5095, miR-5096 and miR-5585-3p in the mRNAs of human genes.Proceedings of the IX International conference on bioinformatics of genome regulation andstructure/systems biology, Novosibirsk, Russia, 2014, P. 69.16) Pyrkova A.Yu., Ivashchenko A.T. and Berillo O.A. Modeling of the problem ofmultiple alignment of the nucleotide sequences and dendrogram construction.Proceedings of the IX International conference on bioinformatics of genome regulation andstructure/systems biology, Novosibirsk, Russia, 2014, P. 70.17)Pyrkova A.Yu., Ivashchenko A.T. and Berillo O.A. Parallelization of algorithm of

prediction of miRNA binding sites in mRNA on the cluster computing platform. Proceedingsof the IX International conference on bioinformatics of genome regulation andstructure/systems biology, Novosibirsk, Russia, 2014, P. 71.18) Akimniyazova A.N., Niyazova R.Y., Pinsky I.V., Berillo О.A. et al. miRNA bindingsites in some mRNAs of maize transcription factor genes. Proceedings of the IV MoscowInternational Conference “Molecular Phylogenetics MolPhy-4”, Moscow, Russia, 2014, P.2.19)Niyazova R.Y., Berillo O.A., Atambayeva S.A. et al. Multiple miR-1322 binding sites inmRNA of paralogous and orthologous genes. Proceedings of the IV Moscow Internationalconference “Molecular phylogenetics MolPhy-4”, 2014, P. 52.20) Berillo O.A., Baidildinova G.K., Moldagalieva A.G. et al. MiRNA binding sites inmRNAs of tumour suppressor genes. Proceedings of the VII Moscow internationalcongress, Biotechnology: state of the art and prospects of development, Moscow, Russia,2013, P. 95-96.21) Berillo O., Baidildinova G. and Moldagalieva A. Intronic microRNAs as regulators ofexpression of genes, which proteins are involved in gastric carcinogenesis. Proceedings ofthe International conference of students and young scientists “Mir nauki”, Almaty,Kazakhstan, 2013, P. 43-44.22)Berillo O., Moldagalieva A. and Baidildinova G. MicroRNAs binding sites in mRNAs ofsome oncogenes. Proceedings of the V international young scientist school “Systembiology and bioinformatics” Novosibirsk, Russia, 2013, Р. 19.23) Berillo O.A. and Ivashchenko А.Т. MicroRNA bind with mRNAs of genes of cellcycle. Proceedings of the International conference “High-throughput sequencing ingenomics”, Medical genomics, Novosibirsk, Russia, 2013, P. 75.24) Berillo O.A. and Ivashchenko A.T. MicroRNAs bind with mRNAs of genes involvingin mitochondrial apoptosis pathway. Proceedings of the International Moscow Conferenceon computational molecular biology, Moscow, Russia, 2013, Р. 124.25) Berillo O. and Ivashchenko A. Interactions between intronic microRNAs andmRNAs of host genes involved in breast cancer. Current opinion in biotechnology, 24S,2013, P. S62.26) Ivashchenko A.T., Issabekova A.S., Berillo O.A. et al. Features of hsa-miR-1279binding sites in protein-coding sequence of PTPN12, MSH6, ZEB1 genes. Proceedings ofthe XIII International conference on bioinformatics of genome regulation andstructure/systems biology, Novosibirsk, Russia, 2012, P. 130. 27) Ivashchenko A.T., Issabekova A.S. and Berillo O.A. miRNAs bind to mRNAs insites encoding conserved oligopeptides. Proceedings of the IX International conference onnanosciences and nanotechnologies, Thessaloniki, Greece, 2012, Р. 302. 28) Issabekova A.S., Berillo O.A., Ivashchenko A.T. miRNA binding sites in protein-coding sequence of orthologous mRNAs encode conserved oligopeptides. Proceedings ofthe III Moscow International conference molecular phylogenetics, Moscow, Russia, 2012,P. 149. 29) Ivashchenko А.Т., Berillo O.A., Issabekova A.S. et al. miRNAs – perspectivepharmaceutical agents in breast cancer treatment. Proceedings of the I Internationalconference “Development of nanotechnologies: challenges of international and regionalscientific and educational centres”, Barnaul, Russia, 2012, P. 199-200.30) Ivachshenko A.T., Berillo O.A.and Khailenko V.A. Revealing of associations miRNAfor diagnostics oncodisease organs of gastric-intestinal tract of the human. Proceedings ofthe VI Moscow international congress biotechnology: state of the art and prospects ofdevelopment, Moscow, Russia, 2011, P. 63.31) Ivachshenko A.T., Berillo O.A. and Khailenko V.A. Interrelation of an expression ofoncogenes by means of intronic miRNA. Proceedings of the VI Moscow internationalcongress biotechnology: state of the art and prospects of development, Moscow, Russia,

2011, P. 63.32) Ivachshenko A.T., Berillo O.A. and Khailenko V.A. Properties of intronic miRNAsaffecting on gene CDH1. Proceedings of the international Moscow conference oncomputational molecular biology, Moscow, Russia, 2011, P. 364.33) Issabekova A.S., Berillo O., Khailenko V.A. et al. Descriptions of interactions ofintergenic, intronic and exonic miRNAs with mRNAs genes involving in carcinogenesis.Proceedings of the International scientific conference: International state of the art andprospects of development, Moscow, Russia, 2012, 36(9), P. 72-73.34) Isabekova A., Berillo O., Khailenko V. et al. Some miRNAs selectively regulate severalcolorectal cancer oncogenes. Proceedings of the Cancer conference NCRI, Liverpool,England, 2011, Р. 151-152.35) Kabdullina A., Berillo O., Khailenko V. et al. Molecular markers development forearly diagnostics of human colon cancer. New Biothechnology, 2010, 27, P.42. 36)Berillo O.A., Isabekova A.S., Khailenko V. et al. Peculiarities of interaction miRNA withmRNA of some oncogenes. Proceedings of the International conference on bioinformaticsof genome regulation and structure\systems biology; International summer school“Bioinformatics and system biology”, Novosibirsk, Russia, 2010, P. 18.