Lighthouse Update - uniklinik-freiburg.de
Transcript of Lighthouse Update - uniklinik-freiburg.de
![Page 1: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/1.jpg)
Lighthouse Update
Lighthouse Core Facility
Marie Follo, Ph.D.
![Page 2: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/2.jpg)
• Sort speeds over 20,000 total events/sec.
• 4-way sorting
• Cell / well cloning (up to 96 wells)
• Index sorting (post-sort phenotyping)
• Aerosol evacuation system
• Biosafety Hood (Fusion)
Multicolor Flow Cytometry:
• 4-5 Lasers :
375 nm / 405 nm (colinear)
488 nm
561 nm
633 nm
• Up to 17 colors / 19 total parameters
• Cuvette-based systems
- high optical sensitivity
Cell Sorters BD FACSAria III / BD FACSAria Fusion
![Page 3: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/3.jpg)
• Sort speed >30,000 total events/sec
• Jet-in-air System
• 6-way sorting
• Cell / well cloning (up to 1536 wells)
• Index Sorting (post-sort phenotyping)
• Small particle detector
Lasers / Parameters:
• 4 Lasers : [405nm, 488nm, 561nm, 633nm]
• 14 colors / 16 total parameters
Fee for Service (MoFlo):
50 €/h + 25 €/set-up
Cell Sorters MoFlo Astrios EQ (CCI)
![Page 4: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/4.jpg)
• Up to 40,000 total events/sec
• From 14 to 17 colors
Different Laser/Color Combinations: • 405nm, 488nm, 640nm (Frida - now with 14 colors)
• 351nm, 405nm, 488nm, 640nm (Dalí - CCI)
• 405nm, 488nm, 561nm, 640nm (Leonardo)
• 405nm, 488nm, 561nm, 640nm + Plateloader (Vincent)
Flow Cytometers BD LSR Fortessa Analysers
Analysis Workstations
• FlowJo (x2)
• Sony SP6800 Software - offline
• Kaluza (Beckman), Diva (BD)
• FCAP Array (BD Bead Array)
• ModFit (Cell Cycle)
Fee for using LSR Dalí (CCI):
5 € / hour
![Page 5: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/5.jpg)
• Installed mid-2017
• Lasers: 405nm, 488nm, 638nm
• Spectral unmixing
• 20+ colors
• User-friendly software
Flow Cytometers Sony SP6800 ZE Spectral Analyzer
![Page 6: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/6.jpg)
Flow Cytometers Sony SP6800 ZE Spectral Analyzer
![Page 7: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/7.jpg)
• As long as spectra differ in shape - colors can be distinguished
• Possibility of 20+ colors simultaneously
Flow Cytometers Sony SP6800 ZE Spectral Analyzer
![Page 8: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/8.jpg)
• GaAsP detectors - very sensitive, single photon counting
• 32 channel spectral scans - fast multicolor imaging
• Motorized XY stage - tiled scans, multipositional time series
• AiryScan detector
Microscopes Zeiss LSM 880 AiryScan
![Page 9: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/9.jpg)
Folie 9 05.03.2018 Korobchevskaya, 2017
Zeiss LSM 880 AiryScan
Microscopes
Resolution:
XY: 120 nm
Z: 350 nm
AiryScan Detector:
• 1.7x better resolution in X,Y,Z
(~5x smaller volume)
• beyond the diffraction limit
("superresolution")
• higher sensitivity / detection
(equiv. to 1.25 AU)
• higher resolution
(equiv. to 0.2 AU)
• improved signal to noise
• low phototoxicity/bleaching
• compatible with all colors/dyes
![Page 10: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/10.jpg)
Microscopes Zeiss LSM 880 with AiryScan
![Page 11: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/11.jpg)
• Live Cell Imaging - full climate chamber
• XY Motor - multiwell / multipositional time series, tiled scans
• 32 channel spectral scans - fast, multicolor imaging
• Zen Blue/Black (widefield and confocal)
Microscopes Zeiss LSM 710 Confocal (CCI)
![Page 12: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/12.jpg)
Microscopes Olympus Scan^R
High Content Screening Station
• Widefield system
• Flexible choice of fluorochromes
• Fully automated
![Page 13: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/13.jpg)
Microscopes Olympus Scan^R
High Content Screening Microscope
Combines aspects from:
• Automated microscopy
• Image analysis
• Flow cytometry-type analysis
Objective and quantitative analysis
Applications:
• Screening assays/large-scale experiments
(96-well, 384-well)
• Slides, multi-well chambers, dishes
• Adherent or suspension cells
• Fluorescence (or IHC)
• Time-lapse, live cell imaging
• Chemotaxis
• Apoptosis in situ
• Cell cycle
• Morphometry
• Translocation/compartmentalization
• Tissue sections or arrays
![Page 14: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/14.jpg)
• 5 Lasers (405,488,546,594,633)
• Filter-free
• Flexible choice of colors
Microscopes
Leica SP2 AOBS Confocal (retiring)
Zeiss AxioImager Upright Microscope
• New and sensitive color and mono cameras
• IHC or fluorescence imaging
• 1.25x, 5x, 10x, 20x, 40x, 63x, 100x
• Slides
![Page 15: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/15.jpg)
Microscopes
Zeiss AxioObserver / Apotome (CCI)
Zeiss Discovery v.8 Stereo Microscope
• Inverse Microscope
• Fluorescence and brightfield
• Mini climate chamber (live cell imaging)
• Dishes, plates or slides
• Now with digital color camera and Zen software
• Brightfield / darkfield / transmitted light
• Dishes, plates, slides
• Overview / larger objects
• Fluorescence?
![Page 16: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/16.jpg)
Microscopes Image Analysis Workstations
• AutoQuant (Deconvolution)
• Metamorph (Image Analysis)
• Zen blue / black
• ScanR Analysis software, Spotfire
• Cell Profiler, Fiji/Image J
• Imaris (new) - 3D Reconstruction and Analysis
Deconvolution
3D Analysis
![Page 17: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/17.jpg)
• 384-well plates
• Low sample volumes (10-12 µL)
• Up to 3 reference genes simultaneously
QPCR Roche LightCycler 480 (LC480) - 2 machines
Analysis Software • Beacon Designer - licensed primer/probe design software
• LightCycler 480 offline software
• QuantaSoft - ddPCR offline software
Droplet Digital PCR (ddPCR) Bio-Rad QX100 ddPCR System
• Absolute quantification
• Rare event detection
• Detects small-fold changes (+/-10%)
• No standard curve required
![Page 18: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/18.jpg)
Lighthouse Core Facility DFG RIsources Database
Lighthouse is recognized as an official core facility by the DFG
- listed on the DFG RIsources web page
- easier for researchers to apply for grant money for facility usage
![Page 19: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/19.jpg)
Lighthouse - UKL/Med I Website http://www.core-facility.de
![Page 20: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/20.jpg)
Lighthouse UKL Website - Internet http://www.core-facility.de
![Page 21: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/21.jpg)
Lighthouse Intranet Page MRBS Calendar Link - also accessible from outside UKL
![Page 22: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/22.jpg)
Lighthouse Website - Internet University Website
![Page 23: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/23.jpg)
Our Team
Marie Follo
Klaus Geiger
Dieter Herchenbach
Jan Bodinek - CCI
Alexandra Schwierzok - CCI
![Page 24: Lighthouse Update - uniklinik-freiburg.de](https://reader030.fdocuments.net/reader030/viewer/2022012710/61aa67b6c7355c4fd06cd51b/html5/thumbnails/24.jpg)
Folie 24 05.03.2018