Pathline: A Tool for Comparative Functional Genomics. Miriah Meyer
Introtmm/talks/alibaba17/utah21intro.pdf · 2021. 3. 1. · 19 Theoretical foundations Nested Model...
Transcript of Introtmm/talks/alibaba17/utah21intro.pdf · 2021. 3. 1. · 19 Theoretical foundations Nested Model...
@tamaramunznerhttp://www.cs.ubc.ca/~tmm/talks.html#utah21intro
Intro
Tamara MunznerDepartment of Computer ScienceUniversity of British Columbia
Utah Viz Course IntrosMar 1 2021
About me
• technical staff, Geometry Center 1991-1995
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Geometry Center: math vis videos, software
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The Shape of SpaceOutside In
Stuart Levy Mark Phillips Delle Maxwell
Geomview
About me
• technical staff, Geometry Center 1991-1995• PhD @ Stanford w/ Pat Hanrahan, 1995-2000• [DEC/Compaq] Systems Research Center (SRC), 2000-2002• UBC, 2002-now
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A quick taste of my own work!
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technique-driven work
problem-driven work
evaluation
theoretical foundations
Technique-driven: Graph/network drawing
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Daniel Archambault
TopoLayout SPF Grouse GrouseFlocks TugGraph
David Auber (Bordeaux)
https://youtu.be/AWXAe8zvkt8
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Guy Melançon (Bordeaux)
Benjamin Renoust
Detangler
https://youtu.be/QOtnHSsUV6k
Technique-driven: Tree drawing
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Zipeng Liu Shing Hei Zhan
https://youtu.be/2SLcz7KNLJwAggregated Dendrograms
TreeJuxtaposer
https://youtu.be/GdaPj8a9QEo
Evaluation experiments: Graph/tree drawing
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Stretch and squish navigation
Joanna McGrenere
Dmitry Nekrasovski Adam Bodnar
Joanna McGrenereJessica Dawson
Search set model of path tracing
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Technique-driven: Dimensionality reduction
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QSNE
GlimmerGlint
Stephen Ingram
DimStiller
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Evaluation experiments: Dimensionality reduction
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Michael Sedlmair
Melanie Tory
Points vs landscapes for dimensionally reduced data
Taxonomy of cluster separation factors
Melanie Tory
Guidance on DR & scatterplot choices
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Evaluation in the field: Dimensionality reduction
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DR in the Wild
Michael Sedlmair Melanie Tory Stephen IngramMatt Brehmer
MulteeSum, Pathline
Problem-driven: Genomics
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source: Humandestination: Lizard chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8chr9
chr10
chr11
chr12
chr13
chr14chr15
chr1
6ch
r17
chr1
8ch
r19
chr2
0
chr21
chr22
chrXchrY
chr3
chr1
chr2
chr3
chr4
chr5
chr6
chrachrb
chrcchrdchrfchrgchrh
saturationline
- +
10Mb
chr3
go to:
chr3 chr3
237164 146709664
386455 146850969
orientation:matchinversion
invert
out in
MizBee
Hanspeter Pfister (Harvard)Miriah Meyer
Aaron BarskyJenn Gardy (Microbio)
Robert Kincaid (Agilent)
Cerebral
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https://youtu.be/76HhG1FQngI
https://youtu.be/86p7brwuz2g
Problem-driven: Genomics, fisheries
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Variant View
Joel FerstayCydney Nielsen (BC Cancer)
Vismon
Maryam BooshehrianTorsten Moeller (SFU)
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https://youtu.be/AHDnv_qMXxQ
https://youtu.be/h0kHoS4VYmk
Problem-driven: Tech industry
14www.cs.ubc.ca/~tmm/talks.html#utah21introLiveRAC: systems time-series
Peter McLachlanStephen North (AT&T Research)
SessionViewer: web log analysis
Heidi LamDiane Tang (Google)
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https://youtu.be/T4MaTZd56G4
https://youtu.be/ld0c3H0VSkw
Problem-driven: Building energy mgmt, journalism
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Kevin Tate
(Pulse/EnerNOC)
Energy Manager
Matt Brehmer
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Jonathan Stray
(Assoc Press)
Overview
https://vimeo.com/71483614
Matt Brehmer Stephen Ingram
Problem-driven: Current data science
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Kimberly Dextras-Romagnino
recent work: Segmentifier (Mobify)
EMichael Oppermann
recent work: Ocupado (Sensible Building Science)
wifi proxy for real-time building occupancy
visual analytics for facilities management
e-commerce clickstreams
build tools for human-in-the-loop visual data analysis
https://youtu.be/TobYDFeISOg https://youtu.be/KcwjVK8eUdw
Curation & Presentation: Timelines
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Johanna Fulda
(Sud. Zeitung)
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Timelines Revisited
timelinesrevisited.github.io/
Nathalie Henry-Riche
Bongshin Lee
(Microsoft)Benjamin Bach
(Microsoft)
Matt Brehmer
TimeLineCurator
https://vimeo.com/123246662
Matt Brehmer
Theoretical foundations: Typologies
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Abstract Tasks
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Matt Brehmer
Anamaria Crisan
Regulatory & Organizational Constraints
GEViT: Genomic Epidemiology Visualization Typology
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Theoretical foundations
Nested Model
Papers Process & Pitfalls
Design Study Methodology
Michael Sedlmair Miriah Meyer
• Visual Encoding Pitfalls
- Unjustified Visual Encoding
- Hammer In Search Of Nail
- 2D Good, 3D Better
- Color Cacophony
- Rainbows Just Like In The Sky
• Strategy Pitfalls
- What I Did Over My Summer
- Least Publishable Unit
- Dense As Plutonium
- Bad Slice and Dice
algorithm
idiom
abstraction
domain
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www.cs.ubc.ca/~tmm/talks.html#utah21intro
Visualization Analysis & Design
More Information• this talk
http://www.cs.ubc.ca/~tmm/talks.html#utah21intro
• book page (including tutorial lecture slides) http://www.cs.ubc.ca/~tmm/vadbook
– 20% promo code for book+ebook combo: HVN17– http://www.crcpress.com/product/isbn/9781466508910
– illustrations: Eamonn Maguire
• papers, videos, software, talks, courses http://www.cs.ubc.ca/group/infovis http://www.cs.ubc.ca/~tmm
20Munzner. A K Peters Visualization Series, CRC Press, Visualization Series, 2014.
Visualization Analysis and Design.
@tamaramunzner