Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire)...

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Installing WRFSfire Adam Kochanski Workshop on Modeling of Wildfires and their Environmental Impacts, Trieste, IT June 2015

Transcript of Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire)...

Page 1: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  WRF-­‐Sfire  

Adam  Kochanski  

Workshop  on  Modeling  of  Wildfires  and  their  Environmental  Impacts,    Trieste,  IT  June  2015  

Page 2: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  Steps  

•  Check  system  requirements  •  Download  required  libraries  •  Install  required  libraries  •  Download  source  data  •  Download  datasets  •  Compile  WRF  •  Compile  WPS  

Page 3: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  Steps  

•  Check  system  requirements  •  Download  required  libraries  •  Install  required  libraries  •  Download  source  data  •  Download  datasets  •  Compile  WRF  •  Compile  WPS  

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Check  System  Requirements  •  Fortran  and  C  compilers  (gnu,  Intel  or  PGF)  possibly  with  MPI    •  C-­‐shell    •  TradiQonal  Unix  uQliQes:  zip,  tar,  make,  etc.    •  netcdf  libraries  compiled  with  the  same  compiler  that  will  be  used  

to  build  the  code    •  JASPER  compression  library  (libpng)  (needed  by  the  WRF  

Preprocessing  System  –  WPS)    •  zlib  compression  library  (zlib)  (needed  by  WPS)    •  ncarg  package  (needed  by  WPS  tools)    •  ncview  (quick  netcdf  data  visualizer)    •  git  (nedded  to  get  the  WRF-­‐Sfire  code)    •  libQff,  libgeoQff  for  fire  data  processing  •  Vapor    

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Downloading  Libraries  To  make  sure  your  environment  is  ready  to  install  WRF,  and  to  download  libraries  go  to:  h"p://www2.mmm.ucar.edu/wrf/users/prepare_for_compila6on.html    Links  to  download  parQcular  libraries:  h[p://www2.mmm.ucar.edu/wrf/src/tutorial_compiling/netcdf-­‐4.1.3.tar.gz  h[p://www2.mmm.ucar.edu/wrf/src/tutorial_compiling/mpich-­‐3.0.4.tar.gz  h[p://www2.mmm.ucar.edu/wrf/src/tutorial_compiling/jasper-­‐1.900.1.tar.gz  h[p://www2.mmm.ucar.edu/wrf/src/tutorial_compiling/libpng-­‐1.2.50.tar.gz  h[p://www2.mmm.ucar.edu/wrf/src/tutorial_compiling/zlib-­‐1.2.7.tar.gz        

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Installing  Steps  

•  Check  system  requirements  •  Download  required  libraries  •  Install  required  libraries  •  Download  source  data  •  Download  datasets  •  Compile  WRF  •  Compile  WPS  

Page 7: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  Libraries  -­‐  MPI  •   InstallaQon  of  the  MPICH2,  NetCDF,  JasPer,  zlib,  and  libpng  libraries  is  NOT  part  of  the  WPS  and  WRF  installaQon  scripts,  they  must  be  installed  separately  

•   Make  sure  these  libraries  are  installed  using  the  same  compilers  as  will  be  used  to  install  WRF  and  WPS  

• Installing  MPI  Libraries:  MPICH2  setenv DIR directory-where-your-tar-files-are setenv CC gcc setenv CXX g++ setenv FC gfortran

setenv FCFLAGS -m64 # FCFLAGS may be needed on some systems setenv F77 gfortran

setenv FFLAGS -m64 # FFLAGS may be needed on some systems

tar xzvf mpich-3.0.4.tar.gz

cd mpich-3.0.4

./configure --prefix=$DIR/mpich make

make install

setenv PATH $DIR/mpich/bin:$PATH

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Installing  Libraries  -­‐  NetCDF  •   InstallaQon  of  the  MPICH2,  NetCDF,  JasPer,  zlib,  and  libpng  libraries  is  NOT  part  of  the  WPS  and  WRF  installaQon  scripts,  they  must  be  installed  separately  

•   Make  sure  these  libraries  are  installed  using  the  same  compilers  as  will  be  used  to  install  WRF  and  WPS  

•   Installing  NetCDF  libraries  tar xzvf netcdf-4.1.3.tar.gz

cd netcdf-4.1.3

./configure --prefix=$DIR/netcdf --disable-dap --disable-netcdf-4 --sable-shared

make make install

setenv PATH $DIR/netcdf/bin:$PATH setenv NETCDF $DIR/netcdf cd . .

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Installing  Libraries  -­‐  zlib  •   InstallaQon  of  the  MPICH2,  NetCDF,  JasPer,  zlib,  and  libpng  libraries  is  NOT  part  of  the  WPS  and  WRF  installaQon  scripts,  they  must  be  installed  separately  

•   Make  sure  these  libraries  are  installed  using  the  same  compilers  as  will  be  used  to  install  WRF  and  WPS  

•   Installing  zlib  Libraries:  

tar xzvf zlib-1.2.7.tar.gz

cd zlib-1.2.7

./configure --prefix=$DIR/zlib make

make install cd . .

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Installing  Libraries  -­‐  libpng  •   InstallaQon  of  the  MPICH2,  NetCDF,  JasPer,  zlib,  and  libpng  libraries  is  NOT  part  of  the  WPS  and  WRF  installaQon  scripts,  they  must  be  installed  separately  

•   Make  sure  these  libraries  are  installed  using  the  same  compilers  as  will  be  used  to  install  WRF  and  WPS  

• Installing  libpng  Libraries:  

tar xzvf libpng-1.2.50.tar.gz

cd libpng-1.2.50

./configure --prefix=$DIR/libpng

make

make install cd ..

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Installing  Libraries  -­‐JasPer  •   InstallaQon  of  the  MPICH2,  NetCDF,  JasPer,  zlib,  and  libpng  libraries  is  NOT  part  of  the  WPS  and  WRF  installaQon  scripts,  they  must  be  installed  separately  

•   Make  sure  these  libraries  are  installed  using  the  same  compilers  as  will  be  used  to  install  WRF  and  WPS  

•     Installing  JasPer  Libraries:  tar xzvf jasper-1.900.1.tar.gz

cd jasper-1.900.1

./configure --prefix=$DIR/jasper

make

make install cd . .

Page 12: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  Libraries  –  libQff  and  geoQff  •   Besides  the  standard  libraries  needed  by  WRF,  in  order  to  use  fire  data  processing  tool  convert_geotiff,  addiQonal  libraries  are  needed  –  libQff  and  geoQff    

•     Installing  libgeoQff  libraries  and  convert_geoQff:  

sudo apt-get install libgeotiff-dev

•     Gegng  convert_geoQff:  h[ps://github.com/jbeezley/convert_geoQff/releases/download/v0.1/convert_geoQff-­‐0.1.0.tar.gz  

tar -xzvf convert_geotiff-0.1.0.tar.gz

cd convert_geotiff-0.1.0

./configure

make

 

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Gegng  the  source  code  of  WRF-­‐Sfire  

•  The  most  current  version  of  the  code  is  available  from  our  GIT  repository:

git clone git://github.com/jbeezley/wrf-fire.git

 This  command  will  create  the  wrf-­‐fire  directory  containing  WRF,  WPS,  plus  addiQonal  tools  

         You  need  git  installed  on  your  machine  in  order  to  get  the  code  from  

GIT.  

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Download  datasets  •  StaQc  geographical  data  are  available  from:  h[p://www2.mmm.ucar.edu/wrf/src/wps_files/geog.tar.gz  

•  GRIB  files  containing  meteorological  data  are  available  from:  h[p://nomads.ncep.noaa.gov/    For  instance  NARR  data  are  avialable  under:  h[p://nomads.ncdc.noaa.gov/data.php?name=access#narr_datasets    

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Installing  WRF-­‐Sfire  •  If  you  got  the  WRF-­‐Sfire  code  from  GIT  it  will  be  already  extracted  and  ready  for  

compilaQon.  You  won’t  need  to  untar  anything.  •  Before  you  start  the  compilaQon  process  set  your  environment  variables  to  the  

locaQons  where  you  installed  required  libraries:  

setenv NETCDF /where-netcdf-is setenv JASPERLIB /where-jasper-lib-is setenv JASPERINC /where-jasper-include-is setenv WRFIO_NCD_LARGE_FILE_SUPPORT 1 setenv LIBTIFF /where-libtiff-is setenv GEOTIFF /where-geotiff-is You  can  verify  if  these  paths  have  been  set  by  typing:   echo $NETCDF echo $JASPERLIB and  so  on.      

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Installing  WRF-­‐Sfire  •      Inside  the  wrf-­‐fire/WRFV3/  directory,  type:  .  /configure checking for perl5... no checking for perl... found /usr/bin/perl (perl) Will use NETCDF in dir: /share_home/jmandel/lib/netcdf PHDF5 not set in environment. Will configure WRF for use without. If you REALLY want Grib2 output from WRF, modify the arch/Config_new.pl script. Right now you are not getting the Jasper lib, from the environment, compiled into WRF. ------------------------------------------------------------------------ Please select from among the following supported platforms. 1. Linux x86_64, PGI compiler with pgcc (serial) 2. Linux x86_64, PGI compiler with pgcc (smpar) 3. Linux x86_64, PGI compiler with pgcc (dmpar) 4. Linux x86_64, PGI compiler with pgcc (dm+sm) 5. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial) 6. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar) 7. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar) 8. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm) 9. x86_64 Linux, gfortran compiler with gcc (serial) 10. x86_64 Linux, gfortran compiler with gcc (smpar) 11. x86_64 Linux, gfortran compiler with gcc (dmpar) 12. x86_64 Linux, gfortran compiler with gcc (dm+sm) Enter selection [1-12] :

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Installing  WRF-­‐Sfire  •      Aner  selecQng  appropriate  opQon  check  if  the  file  configure.wrf  has  ben  created.  It  should  contain  all  the  informaQon  needed  by  WRF  to  build  on  your  plaoorm.  •  If  configure  file  is  there  compile  WRF  typing:   ./compile em_real >& compile_em_real.log&

•  In  order  to  compile  fire  test  cases  compile  them  typing:  ./compile em_fire >& compile_em_fire.log& •  Check  for  errors  in  the  compilaQon  logs  

grep Error compile_em_real.log& grep Error compile_em_fire.log&

Or  just  open  them  in  your  favorite  text  editor  vi,  emacs  etc…  If  the  code  compiled  properly  there  should  be  NO  Error  messages.  

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Installing  WRF-­‐Sfire  •      Go  to  your  ./wrf-fire/WRFV3/run directory  and  check  for:  

ideal.exe real.exe wrf.exe

•  Go  to  wrf-fire/WRFV3/test/em_fire directory,  you  should  see  there  mulQple  fire  cases:  fireflux fireflux_ak fireflux_med fireflux_sfc fireflux_small hillflux hill …

•  During  this  workshop  we  will  be  working  on  specially  prepared  test  cases  named  Experiment1-5 which  you  should  be  copied  to  your  

         wrf-fire/WRFV3/test/em_fire

Page 19: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  Steps  

•  Check  system  requirements  •  Download  required  libraries  •  Install  required  libraries  •  Get  the  source  code  of  WRF-­‐Sfire  •  Download  datasets  •  Compile  WRF  •  Compile  WPS  

Page 20: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

Installing  WPS  •      If  you  got  the  WRF-­‐Sfire  code  from  GIT  the  WRP  preprocessor  (WPS)  should  be  in      

 wrf-fire/WPS •  Go  to  that  directory  and  configure  WPS  typing:  

./configure Will use NETCDF in dir: /share_home/jmandel/lib/netcdf Configuring to use jasper library to build Grib2 I/O... $JASPERLIB = /share_home/jmandel/lib/netcdf/lib $JASPERINC = /share_home/jmandel/lib/netcdf/include $GEOTIFF or $LIBTIFF not found in environment, configuring to build without GeoTIFF I/O... ------------------------------------------------------------------------ Please select from among the following supported platforms. 1. PC Linux x86_64, Intel compiler serial, NO GRIB2 2. PC Linux x86_64, Intel compiler serial 3. PC Linux x86_64, Intel compiler DM parallel, NO GRIB2 4. PC Linux x86_64, Intel compiler DM parallel 5. PC Linux i486 i586 i686,x86_64 gfortran compiler, serial, NO GRIB2 6. (gross) PC Linux x86_64, gfortran compiler, serial 7. PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, serial, NO GRIB2 8. PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, serial 9. PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, DM parallel, NO GRIB2 10. PC Linux x86_64 (IA64 and Opteron), PGI compiler 5.2 or higher, DM parallel 11. PC Linux x86_64, g95 compiler, serial, NO GRIB2 12. PC Linux x86_64, g95 compiler, serial 13. PC Linux x86_64, g95 compiler, DM PARALLEL, NO GRIB2 14. PC Linux x86_64, g95 compiler, DM PARALLEL Enter selection [1-14] :

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Installing  WPS  •      Select  right  opQon  and  make  sure  configure.wps  has  been  created.  •  Compile  WPS  by  typing:   ./compile >& compile_wps.log

•  Check  compile_wps.log for  Error  messages:   grep Error compile_wps.log

 or  open  compile_wps.log  in  your  favorite  editor  and  search  for  ‘Error’  

•  Verify  that  the  WPS  components  got  installed  correctly.  Go  to:  wrf-fire/WPS            You  should  have  there  three  main  components  of  the  WPS:  

geogrid.exe

metgrid.exe ungrib.exe

Page 22: Installing)WRF-Sfire)home.chpc.utah.edu/~u0631741/wrf-sfire/Compiling_WRF_Sfire.pdfInstalling)WRF-Sfire) Adam)Kochanski) Workshop)on)Modeling)of)Wildfires)and)their)Environmental)Impacts,))

QuesQons?  


Coupled atmosphere-wildland fire modeling with WRF 3.3 and … · 2016-01-24 · J. Mandel et al.: Coupled atmosphere-wildland fire model WRF 3.3 and SFIRE 2011 593 2 Domain, grids,

Coupled atmosphere-wildland fire modeling with WRF 3.3 and … · 2016-01-24 · J. Mandel et al.: Coupled atmosphere-wildland fire model WRF 3.3 and SFIRE 2011 593 2 Domain, grids,

DATA MANAGEMENT AND ANALYSIS WITH WRF AND SFIREmath.ucdenver.edu/ccm/reports/rep312.pdf · 2012-08-05 · DATA MANAGEMENT AND ANALYSIS WITH WRF AND SFIRE Jonathan D. Beezley?, Mavin

DATA MANAGEMENT AND ANALYSIS WITH WRF AND SFIREmath.ucdenver.edu/ccm/reports/rep312.pdf · 2012-08-05 · DATA MANAGEMENT AND ANALYSIS WITH WRF AND SFIRE Jonathan D. Beezley?, Mavin

National Weather Service San Diego WRF - Leveraging Operational WRF Runs

National Weather Service San Diego WRF - Leveraging Operational WRF Runs

Project Title: Modeling support for FASMEE experimental ...Project Title: Modeling support for FASMEE experimental design using WRF-SFIRE- CHEM Final Report: JFSP project number: 16-4-05-3

Project Title: Modeling support for FASMEE experimental ...Project Title: Modeling support for FASMEE experimental design using WRF-SFIRE- CHEM Final Report: JFSP project number: 16-4-05-3

ATMO5332 WRF-ARW Tutorial 0.01”. Overview of WRF Modeling System A bare-bones WRF run involves 4 major steps: A bare-bones WRF run involves 4 major steps:

ATMO5332 WRF-ARW Tutorial 0.01”. Overview of WRF Modeling System A bare-bones WRF run involves 4 major steps: A bare-bones WRF run involves 4 major steps:

The recent developments of WRFDA (WRF-Var) Hans Huang, NCAR WRFDA: WRF Data Assimilation WRF-Var: WRF Variational data assimilation Acknowledge: NCAR/ESSL/MMM/DAG,

The recent developments of WRFDA (WRF-Var) Hans Huang, NCAR WRFDA: WRF Data Assimilation WRF-Var: WRF Variational data assimilation Acknowledge: NCAR/ESSL/MMM/DAG,

WRF Verification:

WRF Verification:

WRF-Sfirein ideal caseshome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire... · Input_soundingfile structure July 2009 Mesoscale & Microscale Meteorology Division, NCAR 1000.00 300.00

WRF-Sfirein ideal caseshome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire... · Input_soundingfile structure July 2009 Mesoscale & Microscale Meteorology Division, NCAR 1000.00 300.00

WRF demo/tutorial

WRF demo/tutorial

Optimal Physics Parameterization Scheme Combination of the … · 2020. 1. 14. · 6 AdvancesinMeteorology ERA-Interim WRF-EM WRF-Conf7 WRF-Conf6 WRF-Conf5 WRF-Conf4 WRF-Conf3 WRF-Conf2

Optimal Physics Parameterization Scheme Combination of the … · 2020. 1. 14. · 6 AdvancesinMeteorology ERA-Interim WRF-EM WRF-Conf7 WRF-Conf6 WRF-Conf5 WRF-Conf4 WRF-Conf3 WRF-Conf2

Thermodynamic Wrf

Thermodynamic Wrf

WRF-Var Namelists, Diagnostics, and Tools WRF-Var Namelist WRF-Var Tools and Verification.

WRF-Var Namelists, Diagnostics, and Tools WRF-Var Namelist WRF-Var Tools and Verification.

Instalação do WRF

Instalação do WRF

Wrf Tutorial

Wrf Tutorial

WRF-Hydro Technical Description and User’s Guide · WRF-Hydro Technical Description and User’s Guide 1 ... (Chapter 3), WRF-Hydro pre ... is contained within version 1.0 of WRF-Hydro

WRF-Hydro Technical Description and User’s Guide · WRF-Hydro Technical Description and User’s Guide 1 ... (Chapter 3), WRF-Hydro pre ... is contained within version 1.0 of WRF-Hydro

Running WRF-Sfire with real data - University of Utahhome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire_in_real... · 2018-03-15 · Running WRF-Sfire with real data Process of running

Running WRF-Sfire with real data - University of Utahhome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire_in_real... · 2018-03-15 · Running WRF-Sfire with real data Process of running

Data$Assimila*on$of$Satellite$Ac*ve$ …math.ucdenver.edu/~jmandel/slides/coimbra2014jm.pdf · 2014. 11. 21. · !!!!!SFIRE Atmosphere!model!WRF Surface!fire!spread!model Wind Heat!and!

Data$Assimila*on$of$Satellite$Ac*ve$ …math.ucdenver.edu/~jmandel/slides/coimbra2014jm.pdf · 2014. 11. 21. · !!!!!SFIRE Atmosphere!model!WRF Surface!fire!spread!model Wind Heat!and!

Introduction to WRF-Sfire. - University of Utahhome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire_Presentation.pdfThe WRF model is a fully compressible, and nonhydrostaticmodel (with

Introduction to WRF-Sfire. - University of Utahhome.chpc.utah.edu/~u0631741/wrf-sfire/WRF_Sfire_Presentation.pdfThe WRF model is a fully compressible, and nonhydrostaticmodel (with

New developments in WRF-SFIRE - UC Denvermath.ucdenver.edu/~jmandel/slides/corsica13jm.pdf · 2013-07-10 · New developments in WRF-SFIRE Jan Mandel, Jonathan D. Beezley, Adam K.

New developments in WRF-SFIRE - UC Denvermath.ucdenver.edu/~jmandel/slides/corsica13jm.pdf · 2013-07-10 · New developments in WRF-SFIRE Jan Mandel, Jonathan D. Beezley, Adam K.

WRF exercise 1

WRF exercise 1