Genomic Data Commons · 2020. 11. 3. · GDC-DCF GA4GH Engagement Current GA4GH work streams...
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genomicsandhealth.org GDC-DCF Pilot 1
Transcript of Genomic Data Commons · 2020. 11. 3. · GDC-DCF GA4GH Engagement Current GA4GH work streams...
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GDC-DCFPilot
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GenomicDataCommons–DataCommonsFramework
● NCIGenomicDataCommonsstarted2014● 3NCICloudPilots(nowNCICloudResources)2015● TheseprojectswillbeintegratedwiththeDataCommons
FrameworkandwillsharecommonstandardsandAPIs.● OrganizaKonsinclude:UniversityofChicago,Broad,Seven
BridgesGenomics&InsKtuteforSystemsBiology(morecoming)● Mission:Weareworkingtogethertomakeiteasiertodevelop
andoperatelargescaledatacommonsanddataecosystemsforbiomedicalresearch.
● IniKalfocusiscancergenomics.2
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NCIGenomicDataCommons• Launchedin2016withover4PBofdata.Nowhasover10PBofdata.
• JointprojectwithOICR.
• Usedby1500-2000+usersperday.
• Baseduponanopensourceso\warestackthatcanbeusedtobuildotherdatacommons.
*See: NCI Genomic Data Commons: Grossman, Robert L., et al. "Toward a shared vision for cancer genomic data." New England Journal of Medicine 375.12 (2016): 1109-1112.
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NCI Genomic Data Commons NCI & Third Party Cloud Resources & Apps
analyze explore & access Explore and access
access
Genomic Data Commons – DCF Open Data Sharing Ecosystem
data peering
Bionimbus
Third Party Data Commons
We all have open source stacks: we have collaborated on APIs and competed on implementations for the past 3 years.
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CommonsAlliance
TheCommonsAllianceisaneffortsothatGDC/DFC,AllofUs,andtheHumanCellAtlascandevelopcommonstandardsandAPIs.
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GDC-DCFGA4GHEngagement
● CurrentGA4GHworkstreamsengagement:o Largescalegenomicso Cloudo DatauseandresearcherIDs(previouslyDataAccess)
● WehavehadlimitedinteracKonwithGA4GHunKltherecentre-organizaKon.
● Ourprojectgoalistoconvergeonthesmallestnumberofstandardssowecaninteroperatewithsimilarlargescaledatacommonsandcloud-basedanalysissystems.
● WehavelessinterestinmovingtonewunimplementedAPIs.
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GDC/DataCommonsFramework
Q&A
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