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Leveraging Filtered Push Technology to
Enhance Remote Taxonomic Identifications
Nico Franz1, Edward Gilbert1, Neil Cobb2 & Paul Morris3
1 School of Life Sciences, Arizona State University2 Merriam-Powell Center, Northern Arizona University3 Museum of Comparative Zoology, Harvard University
TDWD 2013 Annual Conference, Florence, Italy Biodiversity Data Quality – Issues, Methods and Tools
October 29, 2013
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Currently 9 Thematic Collection Networks with 130 participating institutions
Advancing Digitization of Biodiversity Collections (NSF ADBC Program) Digitize 1 billion specimens in 10 years
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UNMTAMU
ASU
DMNS
UCB
NMSU
CSU
TTU
NAU
UA
SCAN member collectionsAverage ~ 480 miles apart
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SCAN digitization objectives
• Digitize 1 million records for southwestern ground-dwelling arthropods
• Produce 16,000 high-resolution images of species; promote identifications
• Leverage an interactive identification & annotation workflow via Symbiota
Gerstaeckeria porosa (LeConte, 1876) – ASUHIC0017017 Crotanius trivittatus (Champion, 1908) – ASUHIC0012067
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SCAN ADBCGround-Dwelling
Arthropod Records
SCAN ADBCNon-Target Taxa
Records
SCAN ADBC Collections
SCAN Non-ADBC Broader Impact
Records
SCAN Broader Impact Collections
September, 2013: 510,262 records in SCAN
• 510,262 specimens in Symbiota• 300,984 (59%) georeferenced• 338,836 (66%) identified to species• 1,016 families• 8,056 genera• 17,538 species
Primary need:remote IDs
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Deployment diagram – Symbiota & Filtered Push interaction
Source: http://wiki.filteredpush.org/wiki/FP-Medium_deployment_for_SCAN
Filtere
dP
ush
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od
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ttp://fp
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fl.edu
/FPAn
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tation
Pro
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• New, remotely added identifications are grounded in the Annotation Ontology.
• FP team has developed Symbiota-integrated PHP Client Tools that record andpush new annotations to the external FP infrastructure where statistics are kept.
SCAN Symbiota Portalhttp://symbiota1.acis.ufl.edu/scan/portal/index.php
New FP Client Tools in Symbiota
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Current workings & look in SCAN
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Homepage – http://symbiota1.acis.ufl.edu/scan/portal/index.php
Images
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ID = Scarabaeidae
Image thumbnail gallery – some are insufficiently identified
ID = Epicaerus
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More information – occurrence records, images – is clicks away
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More information – occurrence records, images – is clicks away
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Experts can log in and view a taxon-tailored IDs Needed tab
This is the scarabin need of an ID
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Experts can log in and view a taxon-tailored IDs Needed tab
This is the scarabin need of an ID
Occurrence tab
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Experts can log in and view a taxon-tailored IDs Needed tab
This is the scarabin need of an ID
Occurrence tab
Images tab
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Adding a new identification in the Determination History tab
Scientific Name is linked to theSCAN Taxonomic Thesaurus.
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The fully integrated Symbiota tab for IDs is Filtered Push-enabled
• New = current ID• Image remapping• Submission to FP
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Confirmationin SCAN
Simultaneous ID recording internally (SCAN) and externally (FP)
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Confirmationin SCAN
Confirmationin FP3 node
Simultaneous ID recording internally (SCAN) and externally (FP)
Annotationslist view
AO translation
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Simultaneous ID recording internally (SCAN) and externally (FP)
Confirmationin FP3 node
Confirmationin SCAN
Annotationsdetail view
RDF / XMLtranslation
AO translation
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Future work – 1st production-level Symbiota / FP implementation
• Optimization of SCAN "IDs Needed" user interface – thumbnail view
• Roll-out to the SCAN expert community, creation of expert profiles in FP
• Expansion beyond SCAN members, diversified notification systems
"Curculionidae" ("Calles" sp.) – ASUHIC0031695
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• TDWG 2013 Symposium organizers – Antonio Mauro Saraiva
• James Hanken, Maureen Kelly & David Lowery – http://wiki.filteredpush.org/wiki/
• ASUHIC digitization team – Sangmi Lee, David Fleming, Soon Flynn, Andrew Jansen,Catherine Mercado, Joshua Persson, Sarah Shirota, Michael Shillingburg.
• NSF Award EF-1207107. "Digitization TCN: Collaborative Research: Southwest Collections of Arthropods
Network (SCAN): a Model for Collections Digitization to Promote Taxonomic and Ecological Research."
Acknowledgments
http://symbiota1.acis.ufl.edu/scan/portal/index.php http://taxonbytes.org
https://sols.asu.edu http://symbiota.org/tiki/tiki-index.php