Experimental identification of microRNA targets
Transcript of Experimental identification of microRNA targets
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Review
Experimental identification of microRNA targets
Ulf Andersson rom 1, Anders H. Lund
Biotech Research and Innovation Centre and Centre for Epigenetics, University of Copenhagen, Copenhagen, Denmark
a b s t r a c ta r t i c l e i n f o
Article history:
Received 8 October 2009
Received in revised form 10 November 2009
Accepted 16 November 2009
Available online 24 November 2009
Received by A. J. Van Wijren
Keywords:
microRNA
Target identification
microRNAs are small RNAs that regulate protein synthesis post-transcriptionally. Animal microRNAs
recognize their targets by incomplete base pairing to sequence motifs most often present in the 3
untranslated region of their target mRNAs. This partial complementarity vastly expands the repertoire of
potential targets and constitutes a problem for computational target prediction. Although computationalanalyses have shed light on important aspects of microRNA target recognition, several questions remain
regarding how microRNAs can recognize and regulate their targets. Forward experimental approaches allow
for an unbiased study of microRNA target recognition and may unveil novel, rare or uncommon target
binding patterns. In this review we focus on animal microRNAs and the experimental approaches that have
been described for identification of their targets.
2009 Elsevier B.V. All rights reserved.
1. Introduction
microRNAs (miRNAs) are uncapped, unpolyadenylated small
RNAs that are processed from primary transcripts in sequential
steps by the RNase III endonucleases Drosha in the nucleus ( Lee et al.,
2003) and Dicer in the cytoplasm (Hutvagner, 2005). Mature miRNAare incorporated into the RNA-induced silencing complex (RISC;
Meister et al., 2004b) where they are bound by members of the
Argonaute (Ago) family of proteins and constitute the target
recognition module of RISC (Carthew and Sontheimer, 2009).
Extensive research has revealed the existence of more than 700
different human miRNAs (Griffiths-Jones et al., 2008) and numerous
reports have demonstrated the importance of miRNA-mediated
regulation in key processes, such as proliferation, apoptosis, differen-
tiation and development, cellular identity and pathogenhost inter-
actions (He et al., 2007; Parker and Sheth, 2007; Pillai et al., 2007;
Carthew and Sontheimer, 2009). Despite of this, the mechanisms by
which miRNAs act are still not resolved. The first step toward
unraveling the function of a particular miRNA is the identification of
its direct targets. This step has proven to be quite challenging in
animals primarily due to the incomplete complementarity between
miRNA and target mRNAs.
Some key principles have emerged on the pattern of miRNA target
recognition and these have been applied to computationally predict
targets of miRNA regulation (Bartel, 2009). Examples of commonly
used algorithms are miRanda (John et al., 2004), TargetScan (Lewis
et al., 2003, 2005) and PicTar (Krek et al., 2005). The most general
feature of miRNA regulation described is the recognition of sequence
motifs complementary to the seed region (nucleotides 27 of the
miRNA) in the 3 UTR of target mRNAs (Lewis et al., 2003), which
together with criteria such as target sequence conservation make upthe basis for most target prediction algorithms. It is currently
unknown which proportion of miRNA interactions follow these
rules and functional recognition motifs outside of the 3 UTRs, not
following the seed rule and target sequences that are not conserved
between species, have been reported (Ha et al., 1996; Reinhart and
Bartel, 2002; Vella et al., 2004b; Jopling et al., 2005; Krek et al., 2005;
Didiano and Hobert, 2006; Easow et al., 2007; Orom et al., 2008; Tay
et al., 2008; Tsai et al., 2009).
Computational approaches to miRNA target identification are
strong tools to narrow down the list of putative targets of miRNA
regulation and have contributed significantly to the development of
the miRNA field. However, a limitation of target predictions is that
they rely on few established principles and as such cannot help in
revealing novel aspects of miRNA target recognition. While several
reports document the validity of predicted targets for miRNA
regulation, many predicted targets do not recapitulate regulation in
validation experiments (Nakamoto et al., 2005; Vinther et al., 2006;
Frankel et al., 2008; Baek et al., 2008; Didiano and Hobert, 2008;
Selbach et al., 2008; Jiang et al., 2009). A thorough study of miRNAs
predicted to target CyclinD1 has addressed this using luciferase
reporter assays (Jiang et al., 2009). Out of 45 miRNAs predicted to
target the CyclinD1 3 UTR only 7 could be confirmed by the authors
(16%). While false positive predictions can be eliminated by
experimental validation studies, the number of false negative
predictions remains unknown. An unbiased approach to study
miRNA interactions with their targets would provide much insight
Gene 451 (2010) 15
Abbreviations: UTR, untranslated region; miRNA, microRNA; RISC, RNA-induced
silencing complex; SILAC,stableisotope labeling by amino acids in cell culture; HITS-CLIP,
high-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation.
Corresponding author.
E-mail address: [email protected] (A.H. Lund).1 Present address: The Wistar Institute, 3601 Spruce Street, Philadelphia, PA, USA.
0378-1119/$ see front matter 2009 Elsevier B.V. All rights reserved.
doi:10.1016/j.gene.2009.11.008
Contents lists available at ScienceDirect
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mailto:[email protected]://dx.doi.org/10.1016/j.gene.2009.11.008http://www.sciencedirect.com/science/journal/03781119http://www.sciencedirect.com/science/journal/03781119http://dx.doi.org/10.1016/j.gene.2009.11.008mailto:[email protected] -
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into additional recognition patterns and help as well to exclude false
negative predictions. In this review, we describe the reported
experimental approaches to identify the mRNA targets associated
with specific miRNAs in animals (for overview, see Fig. 1).
2. Experimental target identification
2.1. Transcriptome analyses
The realization that animal miRNAs down-regulate the level of a
number of their target mRNAs (Bagga et al., 2005; Lim et al., 2005)
paved the way for a series of overexpression and miRNA inhibition
studies where miRNA targets were sought identified on a transcrip-
tome-wide scale (Krutzfeldt et al., 2005; Christoffersen et al., 2007;
Frankel et al., 2008; Grimson et al., 2007; Elmen et al., 2008a ). Initial
studies transiently transfected the tissue specific miRNAs miR-1
(muscle specific) and miR-124a (brain specific) into HeLa cells where
they are normally not expressed and used microarray analyses to
identify the cohort of mRNAs down-regulated as a consequence of
miRNA overexpression (Lim et al., 2005). Subsequent analysis showed
that target mRNA down-regulation is highly significantly associated
with the presence of an miRNA seed complementary site in the mRNA
3 UTR sequence. In addition, correlations between the mRNA targets
and the miRNAs are shown: identified targets are primarily expressed
at low levels in the tissues with high expression of the miRNAs ( Farh
et al., 2005; Lim et al., 2005). Furthermore, introducing the tissue
specific miRNAs into HeLa cells shifted the mRNA expression profile
toward that of the tissue normally expressing the miRNA, suggesting
a very important role for miRNAs in tissue development and
maintenance (Lim et al., 2005). The option to identify a large set
of miRNA targets using microarrays has prompted other groups to
take similar approaches to unravel miRNA functions both in cell
culture and in vivo. A modified approach, in part trying to avoid off-
target effects resulting from miRNA overexpression, is to inhibit the
miRNA of interest with oligonucleotides complementary to the
miRNA (Hutvagner et al., 2004; Meister et al., 2004a; Orom et al.,
2006) and analyze mRNA levels on microarrays. When inhibiting
the miRNA a subset of its targets will increase at both the protein
and mRNA levels and potential targets can thus be readily
identified (Krutzfeldt et al., 2005; Frankel et al., 2008ff; Elmen et
al., 2008b; Christoffersen et al., 2009). Two reports apply both
overexpression and inhibition of miRNAs (Nicolas et al., 2008;
Ziegelbauer et al., 2009). By analyzing the overlap between these
two series of experiments the list of putative direct target is signi-ficantly reduced. When miR-140 was either overexpressed or
inhibited (Nicolas et al., 2008) a list of 1236 and 466 genes were
reported as differentially expressed, while the overlap between the
two experiments was only 49 transcripts. Twenty-one of these 49
mRNAs contain miR-140 seed complementary sites, yet none of them
are predicted by commonly used miRNA target prediction algorithms,
suggesting a significant number of false negative predictions by these
algorithms.
While these approaches can identify a subset of miRNA targets,
they are limited to the mRNAs that are degraded to a certain extent by
their targeting miRNAs, and the applications of such approaches have
been highly dependent on computational analyses based on sequence
complementarity. Such an approach yields many candidate target
mRNAs that are differentially expressed upon exogenous introduction
of miRNAs andmost likelymany false positive candidates areincluded
due to downstream effects of the affected true miRNA mRNA targets.
An approach to limit the number of false positives is to rely on seed
site complementarity in the detected candidates. It is evident from
these experiments that destabilization of target mRNAs is an
important mechanism for miRNA function, on top of the strict
translational repression without effects on mRNA levels.
2.2. Biochemical approaches
Several known miRNA targets have been identified using bioinfor-
matic analyses for seed complementarity and subsequent experi-
mental and functional validation of the interaction. A more
challenging task is to identify those targets regulated primarily at
the level of translation, or recognized through non-seed base pairinginteractions. Toward this, several groups have reported progress using
different experimental approaches. Three reports address experimen-
tal miRNA target identification by immunoprecipitation of Ago
proteins, either tagged or endogenous, to analyze the associated
mRNAs as candidate miRNA targets.
Karginov et al. used an epitope-tagged Ago2 in HEK293 to isolate
targets of mir-124a, an miRNA not endogenously expressed in
HEK293 cells (Karginov et al., 2007). Initial validation of the approach
showed significant enrichment of three previously characterized
targets of miR-124a, Ctdsp1, Plod3 and Vamp3, whereas a panel of
housekeeping mRNAs was not enriched after immunoprecipitation of
the myc-tagged Ago2. To identify a comprehensive set of miR-124a
targets the myc-Ago2 immunoprecipitates were hybridized to
microarrays along with determination of total mRNA levels. BothmRNA targets that are down-regulated in total mRNA and targets that
are unaffected at the mRNA level by the miRNA were identified in the
immunoprecipitates. Four of 4 down-regulated mRNA targets and 21
of 30 tested mRNAs that were not affected at total mRNA level were
validated in luciferase reporter 3 UTR assays, but a further
characterization of the translationally regulated targets was not
pursued. The paper shows that miRNA targets can be isolated and
identified using Ago immunoprecipitation, identifying primarily those
targets that are translationally repressed. Similar findings were
demonstrated for miR-1 in a Drosophila system (Easow et al., 2007).
Using immunoprecipitation of HA-tagged Ago1 proteins in S2 cells
and subsequent microarray analysis, enrichments for mRNAs contain-
ing miR-1 miRNA seed complementary sites in their 3 UTRs were
demonstrated to correlate with the expression level of the specific
Fig. 1. Overview of approaches for experimentally identifying microRNA targets.
microRNA regulation of translation is a multi-facetted process that allows several
entrances for experimentally identifying the targets regulated by a specific microRNA.
Reports address this issue through: (1) Analysis of mRNAs degraded as a consequence
of overexpressing the microRNA and subsequent analysis of sequence motifs, (2)
immunoprecipitation of tagged or endogenous RISC complex and analysis of associated
mRNAs, (3) Affinity purification of tagged microRNAs and microarray analysis of
associated mRNAs, (4) by using the observation that some microRNA targets move in
the polysomal distribution upon microRNA targeting and analyzing differences in
polysomal associated mRNAs with and without the microRNA, (5) analyzing protein
production following labeling of proteins and mass spectrometry.
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miRNAs. The study shows as well the applicability of Ago immuno-
precipitation for miRNA target identification, but lacks a thorough
analysis of the identified targets. Rather the report focuses on the
presence of miR-1 seeds in a subset of the identified potential targets
of miR-1 regulation. Beitzinger et al. (2007) isolated endogenous Ago
proteins from HEK293 cells using highly specific monoclonal
antibodies against either human Ago1 or human Ago2 (Beitzinger
et al., 2007). By purifying RNAs associated with either of the Ago
proteins, cDNA synthesis and cloning, the associated mRNAs wereidentified. Analysis of the putative miRNA targets shows little overlap
between Ago1- and Ago2-associated miRNA targets in human
HEK293 cells, suggesting that specific pools of miRNAs or miRNA
targets are associated to the different Ago proteins. About half of the
suggested targets were predicted by at least one of the three applied
target prediction methods: MiRanda (John et al., 2004), TargetScan
(Lewis et al., 2003, 2005) or Pictar (Krek et al., 2005). For validation, 6
mRNAs predicted to be targets of miRNA regulation were selected.
Cloning of their 3 UTRs into a luciferase reporter vector and reporter
assays with both miRNA overexpression or miRNA inhibition
confirmed that these targets are regulated by the predicted miRNA
through their 3 UTRs.
While all three studies report the identification of miRNA targets
using experimental approaches, none of them address miRNA target
recognition directly but tend to rely on miRNA seed site interaction for
validation. The three papers show the potential of Ago immunopre-
cipitation as a means of identifying miRNA targets but at the same
time they demonstrate the inherited difficulties in experimental
miRNA target identification. While several thousands of mRNAs are
hypothesized to be regulated by miRNAs, only a few are identified
using these approaches.
Tagging of the miRNA is another approach that has been employed
to identify targets of miRNA regulation. By transfecting cells with
miRNAs labeled with biotin and subsequently isolating the associated
mRNAs, this method has been described for the well-characterized
bantam/hid interaction in Drosophila both in reporter assays in
HEK293 cells and for endogenous hid in S2 cells, where the hid 3 UTR
could be affinity purified using a biotin-tagged bantam miRNA (Orom
and Lund, 2007). The method has been used to validate individualmiRNA:target interactions (Kedde et al., 2007; Christoffersen et al.,
2009) and to identify targets and suggest a novel function of the
miRNA miR-10a (Orom et al., 2008). Surprisingly, it was found that
miRNA-10a can target mRNAs encoding ribosomal proteins through
their 5 UTRs via non-seed interactions to enhance their translation, as
well as modulate mRNA targets through their 3 UTRs and repress
their translation (Orom et al., 2008). Using this method, it was shown
by cross-linking followed by primer extension mapping of the miRNA
binding site that the non-canonical interaction is direct, which is also
validated by mutating the miRNA target sequence and the
corresponding bases in the miRNA to recover the enhancing effect
observed of the miRNA.
An in vitro procedure using digoxigenin-labeled miRNA precursors
has also been employed (Hsu et al., 2009). By incubation with anti-DIG antiserum known miRNA targets from C. elegans and zebrafish
were confirmed using qPCR. Additionally the approach identified
hand2 as a miR-1 target.
Controversy exists about miRNA target association to polysomes.
mRNAs targeted by miRNAs are both reported associated to
polysomes while bound by miRNAs and reported to shuttle in the
polysomal spectrum as a consequence of miRNA regulation (Olsen
and Ambros 1999; Nelson et al., 2004; Nakamoto et al., 2005; Pillai et
al., 2005; Petersen et al., 2006; Thermann and Hentze, 2007).
Nakamoto et al. have used the assumption that the position of a
transcript in a polysome profile reflects, in part, the degree of its
translation. Hence, shifts into heavier polysome fractions would
reflect increased translation (Nakamoto et al., 2005). Using knock-
down of endogenous miR-30a-3p and isolating polysomal and sub-
polysomal fractions and comparing associated mRNAs on micro-
arrays, 8 mRNAs translationally induced upon miR-30a-3p knock-
down were identified and validated as being targets of miR-30a-3p
regulation. Despite that all 8 mRNAs contain seed sites (including G:U
wobble pairs), none of them were predicted to be targets of miR-30a-
3p by the applied algorithms with a score above threshold. This study
clearly demonstrates the applicability of forward approaches to
identify miRNA targets. Even though only a few target candidates
are identifi
ed, none of them were previously predicted to be targets ofmiR-30a-3p.
A recent report using purification of cross-linked RNA-binding
proteins has shed more light on miRNA target recognition (Chi et al.,
2009). This approach, termed HITS-CLIP, uses ultraviolet light to
cross-link Ago proteins to associated RNA and miRNA. Ago protein
complexes were immunoprecipitated and purified from mouse brains
and the associated RNA identified by sequencing. Clusters of Ago
binding sites were then identified, which provided not only thebound
transcript but also the position of Ago binding. The study identifies
1463 Ago clusters mapping to 829 transcripts. The identity of the
miRNA bound to each target is not known with this approach. The
authors use bioinformatics prediction to account for their presump-
tion that the 20 most expressed miRNAs account for the majority of
bound targets, however 27% of identified targets do not contain
sequences corresponding to the 20 most expressed miRNAs. miRNAs
are shown to bind mostly to 3 UTRs but also to a large degree to the
open reading frames of the identified targets, although it is unclear if
these binding sites are functional. The brain specific miRNA miR-124
was used to compare to bioinformatics predictions for miR-124
targets. Interestingly, there is a substantial overlap between targets
identified for miR-124 using HITS-CLIP and computationally predicted
transcripts, although the experimental approach identifies fewer
binding sites for Agos in each transcript. This study provides insight
on miRNA target recognition and can potentially assist in unraveling
as yet uncharacterized patterns of miRNA target recognition, as the
approach not only can help identify the targets of miRNA regulation
but also define the region within which the interaction takes place.
The option of studying single miRNAs with this approach would give
even more insightful knowledge on the target recognition propertiesof a single miRNA without having to guess some of the interactions or
make assumptions of which miRNAs are binding the identified target
mRNA. Currently, further development of this method is ongoing in
several laboratories.
2.3. Proteome analyses
Several proteomic approaches for studying miRNA target regula-
tion using stable isotope labeling by amino acids in cell culture
(SILAC) have been reported (Vinther et al., 2006; Baek et al., 2008;
Selbach et al., 2008). This experimental approach is appealing as it
may identify targets regulated both by transcript destabilization and
translational repression. With SILAC, proteins are metabolically
labeled by growing cells in medium containing heavy isotopes ofessential amino acids typically lysine and arginine. Using mass
spectrometry, differences in protein synthesis can be determined by
the ratio of peptide peak intensities from the light and heavy isotopes.
Thefirststudy to apply SILAC formiRNAtarget identification found
12 targets for the miRNA miR-1 in HeLa cells ( Vinther et al., 2006).
Eight of the 12 identified targets contain seed complementary sites in
their 3 UTRs. A comparison with mRNA microarray analysis studies of
miR-1 targets in HeLa cells (Lim et al., 2005) showed that four of these
targets overlap between the two studies using different approaches to
address the same question. Luciferase reporter validation of 3 UTRs of
the identified target genes supported 6 of the putative target mRNAs
identified, underlining the applicability of the method for miRNA
target identification. Following this report, two large-scale proteomics
studies to identify miRNA targets have been published (Baek et al.,
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2008; Selbach et al., 2008). Baek et al.studied themiRNAs miR-1,miR-
124 and miR-181 in HeLa cells and the effect of removing miR-223 in
mouse neutrophils. Selbach et al. used a slightly modified SILAC
procedure where cells were pulse-labeled to incorporate the isotopes
primarily into newly synthesized proteins, and studied the miRNAs
miR-1,miR-30, miR-155, miR-16and let-7band knock-down of let-7b
in HeLa cells.
While one large-scale study reports primarily effects at the level of
mRNA stability (Baek et al., 2008), another observes more instancesofspecific translational inhibition (Selbach et al., 2008).
Common to the two reports is that they show effects of single
miRNAs on hundreds of proteins, albeit with a bias toward the
detection of proteins expressed at a higher level. Most of these effects
are modest, making it hard to distinguish primary miRNA effects from
secondary effects. Analyses for predicted binding sites in the 3 UTRs
show enrichment for the presence of seed sites. The small effects
observed lead theauthors to suggest that an important role of miRNAs
might be the fine-tuning of the expression of many proteins.
In addition, several putative targets show up-regulation of protein
synthesis, suggesting a general enhancing effect of miRNAs (Selbach
et al., 2008), either indirect or direct, on a large number of proteins.
An example of a clinically applicable small-scale proteomics
approach using reverse-phase protein miRNA analysis has been
described (Iliopoulos et al., 2008). Comparison of miRNA expression
and reverse-phase protein arrays probed with 214 antibodies in
combination with miRNA target prediction identified a number of
putative targets of miRNA regulation involved in the pathogenesis of
osteoarthritis. The study identified and validated the regulation by
miR-22 ofBMP7and PPARa. While the approach relies completely on
target prediction algorithms, it is advantageous for analysis of clinical
samples where the amount of sample is limited.
3. Discussion
When considering the several approaches reported to successfully
identify mRNA targets of miRNA regulation only few experimentally
identified and functionally validated miRNA targets exist. This likely
reflects the challenge of miRNA target identification and subsequentuseful functional validation.
miRNA target validation focusing on computationally predicted
targets has been discussed recently (Kuhn et al., 2008; Bartel, 2009).
For experimentally identified targets, functional validation is more
relevant than computational analyses. Approaches such as calculation
ofG values are mostly useful to narrow down the number of
putative candidate target mRNAs from bioinformatics analyses and
may also exclude true targets. Effects on endogenous target protein
levels serve as good indicators for valid miRNA target interactions,
although indirect effects cannot be excluded from these experiments.
A more direct validation, although not in its natural context, can be
obtained by cloning a sequence of the mRNA of interest into a
luciferase reporter and do co-transfection reporter assays. By
mutating the identified target site and subsequently introducingcomplementary mutations into the miRNA sequence, abrogation and
restoration of the translational effect on the reporter should be
observed for a true miRNA target. This approach suffers from the
limitation that both target and miRNA are present at artificially high
concentrations, which may affect the effect observed (Doench and
Sharp, 2004). Furthermore, direct evidence that an mRNA is
endogenously bound by an miRNA can be obtained by using either
formaldehyde cross-linking of the miRNA to its targets (Vasudevan
et al., 2007) or 4-thiouridine-modified miRNAs (Orom et al., 2008),
that allows for subsequent mapping of the exact site of binding using
primer extension.
The data obtained from experimental approaches to identify
miRNA targets should, in addition to identifying targets involved in
the processesstudied, be used to characterize miRNA binding patterns
further. Most of the approaches described in this review resort to
using the proposed seed pattern of miRNA recognition of their targets
as a validation criterion for the success of their approach, rather than
asking which patterns of recognition can be deduced from their data.
Flanking sequences outside of the miRNA recognition site have been
suggested to have important regulatory functions for a number of
miRNAs (Vella et al., 2004a; Didiano and Hobert, 2006; Grimson et al.,
2007; Kertesz et al., 2007; Didiano and Hobert, 2008), but very little
has been done so far toward identifying additional mRNA determi-nants for miRNA binding and function.
A major problem with an unbiased forward approach in target site
analysis is the rather limited number of experimentally identified and
validated targets each approach has revealed. With the recent, large-
scale proteomic approaches, together with genome-wide mapping of
miRNA binding regions coming from techniques such as HITS-CLIPS,
this may no longer be a limitation.
4. Conclusion
Identifying targets of miRNA regulation remains a fundamental
challenge and the lack of knowledge concerning the different
mechanisms by which miRNAs work constitutes a major problem
for experimental target identification. Hence, a combination of target
identification methods may turn out to be necessary to reveal the full
spectrum of miRNA target regulation. While the approaches applying
Ago tagging and immunoprecipitation will likely miss degraded
mRNAs, these are readily picked up by transfection and microarray
approaches, which in turn cannot be used to identify targets that are
exclusively regulated at the level of translation. The most compre-
hensive approach described so far for miRNA target identification is
the proteomics approach reported by three different groups (Vinther
et al., 2006; Baek et al., 2008; Selbach et al., 2008), and such an
approach should be able to pick up all kinds of repression by the
miRNA, as theoutput is protein levels. Whileit remains problematic to
distinguish primary and secondary effects without relying on
extensive experimental validation or on computational predictions,
global proteomics approaches could reveal new aspects of miRNA
target site recognition and function. While repression is by far themost commonly reported effect of miRNA targeting of an mRNA,
enhancement of translation by miRNAs has been observed by a
handful of groups so far (Vasudevan et al., 2007; Henke et al., 2008;
Orom et al., 2008; Selbach et al., 2008; Iwasaki and Tomari, 2009; Tsai
et al., 2009), two of which are based on experimental target
identification. This could be a consequence of different miRNA
recognition motifs, of mRNA sequence context, or as recently
suggested due to cell cycle-dependent differences in miRNA functions
(Vasudevan et al., 2007).
In summary, experimental identification of miRNA targets should
to a higher extent be used to expand the current knowledge of miRNA
target recognition and broadening of the spectrum of miRNA targets.
Acknowledgments
Work in the authors' laboratory is supported by EC FP7 funding
(ONCOMIRS, Grant Agreement Number 201102. This publication
reflects only the authors' views. The commission is not liable for any
use that may be made of the information herein), the Novo Nordisk
Foundation, the Danish National Research Foundation, the Danish
Medical Research Council, the Danish Cancer Society and the Danish
National Advanced Technology Foundation. UA is supported by a
personal grant from the Danish Medical Research Council.
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