Engineering Tools: Scientific Writing with LaTeX and ... · LaTeX and Vector Graphics Fabian Rast...

Marc SiegenthalerYves Schär

Engineering Tools: Scientific Writing with LaTeX and Vector Graphics

Fabian Rast

Part 3: Figures, Bibliographies, and Additional Hints

ETH Zürich | 19. September 2019

[email protected]

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19. September 2019 Rehabilitation Engineering Laboratory | ETH Zurich

Today: Figures

Export & edit vector graphics

Insert vector elements into a non-vector graphic


Today: Bibliography

3


Today: Additional Hints

� 2009 Microchip Technology Inc. Preliminary DS39940C

PIC24FJ64GB004 FamilyData Sheet

28/44-Pin, 16-Bit,Flash Microcontrollers

with USB On-The-Go (OTG)and nanoWatt XLP Technology

� 2009 Microchip Technology Inc. Preliminary DS39940C-page 1

PIC24FJ64GB004 FAMILY

Universal Serial Bus Features:_ USB v2.0 On-The-Go (OTG) Compliant_ Dual Role Capable f can act as either Host or Peripheral_ Low-Speed (1.5 Mb/s) and Full-Speed (12 Mb/s) USB

Operation in Host mode_ Full-Speed USB Operation in Device mode_ High-Precision PLL for USB_ 0.25% Accuracy using Internal Oscillator f No External

Crystal Required_ Internal Voltage Boost Assist for USB Bus Voltage

Generation_ Interface for Off-Chip Charge Pump for USB Bus

Voltage Generation_ Supports up to 32 Endpoints (16 bidirectional):

- USB module can use any RAM location on the device as USB endpoint buffers

_ On-Chip USB Transceiver_ Interface for Off-Chip USB Transceiver_ Supports Control, Interrupt, Isochronous and Bulk Transfers_ On-Chip Pull-up and Pull-Down Resistors

High-Performance CPU:_ Modified Harvard Architecture_ Up to 16 MIPS Operation @ 32 MHz _ 8 MHz Internal Oscillator with 0.25% Typical Accuracy:

- 96 MHz PLL- Multiple divide options

_ 17-Bit x 17-Bit Single-Cycle Hardware Fractional/integer Multiplier

_ 32-Bit by 16-Bit Hardware Divider_ 16 x 16-Bit Working Register Array_ C Compiler Optimized Instruction Set Architecture:

- 76 base instructions- Flexible addressing modes

_ Linear Program Memory Addressing up to 12 Mbytes_ Linear Data Memory Addressing up to 64 Kbytes_ Two Address Generation Units for Separate Read and

Write Addressing of Data Memory

Power Management Modes:_ Selectable Power Management modes with nanoWatt

XLP Technology for Extremely Low Power:- Deep Sleep mode allows near total power-down

(20 nA typical and 500 nA with RTCC or WDT), along with the ability to wake-up on external triggers or self-wake on programmable WDT or RTCC alarm

- Extreme low-power DSBOR for Deep Sleep, LPBOR for all other modes

- Sleep mode shuts down peripherals and core for substantial power reduction, fast wake-up

- Idle mode shuts down the CPU and peripherals for significant power reduction, down to 4.5 �A typical

- Doze mode enables CPU clock to run slower than peripherals

- Alternate Clock modes allow on-the-fly switching to a lower clock speed for selective power reduction during Run mode down to 15 �A typical

Special Microcontroller Features:_ Operating Voltage Range of 2.0V to 3.6V_ Self-Reprogrammable under Software Control_ 5.5V Tolerant Input (digital pins only)_ High-Current Sink/Source (18 mA/18 mA) on All I/O Pins_ Flash Program Memory:

- 10,000 erase/write cycle endurance (minimum)- 20-year data retention minimum- Selectable write protection boundary

_ Fail-Safe Clock Monitor Operation:- Detects clock failure and switches to on-chip

FRC oscillator _ On-Chip 2.5V Regulator_ Power-on Reset (POR), Power-up Timer (PWRT)

and Oscillator Start-up Timer (OST)_ Two Flexible Watchdog Timers (WDT) for Reliable

Operation:- Standard programmable WDT for normal operation- Extreme low-power WDT with programmable

period of 2 ms to 26 days for Deep Sleep mode_ In-Circuit Serial Programmingm (ICSPm) and

In-Circuit Debug (ICD) via 2 Pins_ JTAG Boundary Scan Support

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28/44-Pin, 16-Bit, Flash Microcontrollers with USB On-The-Go (OTG) and nanoWatt XLP Technology

PIC24FJ64GB004 FAMILY

DS39940C-page 2 Preliminary � 2009 Microchip Technology Inc.

Analog Features:_ 10-Bit, up to 13-Channel Analog-to-Digital (A/D)

Converter:- 500 ksps conversion rate- Conversion available during Sleep and Idle

_ Three Analog Comparators with Programmable Input/Output Configuration

_ Charge Time Measurement Unit (CTMU):- Supports capacitive touch sensing for touch

screens and capacitive switches- Provides high-resolution time measurement and

simple temperature sensing

Peripheral Features:_ Peripheral Pin Select:

- Allows independent I/O mapping of many peripherals- Up to 25 available pins (44-pin devices)- Continuous hardware integrity checking and safety

interlocks prevent unintentional configuration changes_ 8-Bit Parallel Master Port (PMP/PSP):

- Up to 16-bit multiplexed addressing, with up to 11 dedicated address pins on 44-pin devices

- Programmable polarity on control lines- Supports legacy Parallel Slave Port

_ Hardware Real-Time Clock/Calendar (RTCC):- Provides clock, calendar and alarm functions- Functions even in Deep Sleep mode

_ Two 3-Wire/4-Wire SPI modules (support 4 Frame modes) with 8-Level FIFO Buffer

_ Two I2Cm modules support Multi-Master/Slave mode and 7-Bit/10-Bit Addressing

_ Two UART modules:- Supports RS-485, RS-232 and LIN/J2602- On-chip hardware encoder/decoder for IrDA®

- Auto-wake-up on Start bit- Auto-Baud Detect (ABD)- 4-level deep FIFO buffer

_ Five 16-Bit Timers/Counters with Programmable Prescaler

_ Five 16-Bit Capture Inputs, each with a Dedicated Time Base

_ Five 16-Bit Compare/PWM Outputs, each with a Dedicated Time Base

_ Programmable, 32-Bit Cyclic Redundancy Check (CRC) Generator

_ Configurable Open-Drain Outputs on Digital I/O Pins_ Up to 3 External Interrupt Sources

Pin Diagrams

28-Pin SPDIP, SOIC(1)

Legend: RPn represents remappable peripheral pins.Note 1: Gray shading indicates 5.5V tolerant input pins.

2: Alternative multiplexing for SDA1 and SCL1 when the I2C1SEL bit is set.

PIC24FJXXG

B002

MCLR

VSS

VDD

PGED3/AN0/C3INC/VREF+/ASDA1(2)/RP5/PMD7/CTED1/VBUSVLD/VCMPST1/CN2/RA0PGEC3/AN1/C3IND/VREF-/ASCL1(2)/RP6/PMD6/CTED2/SESSVLD/VCMPST2/CN3/RA1

VDDVSS

PGED1/AN2/C2INB/DPH/RP0/PMD0/CN4/RB0

VBUS

SOSCO/SCLKI/T1CK/C2INC/PMA1/CN0/RA4SOSCI/C2IND/RP4/PMBE/CN1/RB4

DISVREGOSCO/CLKO/PMA0/CN29/RA3OSCI/CLKI/C1IND/PMCS1/CN30/RA2 VCAP/VDDCORE

TDI/RP7/PMD5/INT0/CN23/RB7

TDO/SDA1/RP9/PMD3/RCV/CN21/RB9TCK/USBOEN/SCL1/RP8/PMD4/CN22/RB8

AN5/C1INA/DMLN/RTCC/SCL2/RP3/PMWR/CN7/RB3AN4/C1INB/DPLN/SDA2/RP2/PMD2/CN6/RB2

PGEC1/AN3/C2INA/DMH/RP1/PMD1/CN5/RB1

1234567891011121314

2827262524232221201918171615

AN9/C3INA/VBUSCHG/RP15/VBUSST/CN11/RB15AN10/C3INB/CVREF/VCPCON/VBUSON/RP14/CN12/RB14AN11/C1INC/RP13/PMRD/REFO/SESSEND/CN13/RB13VUSB

PGED2/D+/VPIO/RP10/CN16/RB10PGEC2/D-/VMIO/RP11/CN15/RB11

TMS/USBID/CN27/RB5

� 2009 Microchip Technology Inc. Preliminary DS39940C-page 3

PIC24FJ64GB004 FAMILYPin Diagrams

28-Pin QFN(1,3)

Legend: RPn represents remappable peripheral pins.Note 1: Gray shading indicates 5.5V tolerant input pins.

2: Alternative multiplexing for SDA1 and SCL1 when the I2C1SEL bit is set.3: The back pad on QFN devices should be connected to VSS.

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Insert existing PDFsinto documents


1. Figures


Exporting Figures from Matlab

Vector graphic (*.pdf) Raster graphic (*.jpg)

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Exporting Figures from Matlab• It’s a good idea to export images

as vector graphics (e.g. *.pdf):

ü Plots can be scaled without loss of quality

ü Plots can be edited later in a vector graphics editor (Inkscape [freeware]), Illustrator [payware])

ü Keeps file size low


Exporting figures from Matlab1) Adjust Font Size:

File à Export Setup

• Under Fonts, enter fixed font size (12-14 pt)

• Click Apply to Figure, then click OK

2) Export Plot: File à Save As or click Export in setup window

• Select file format: PDF

• Name the figure and save it


Adjust PDF paper size

1) In Export Setup, input size of the output you want,

e.g. Width: 15 cm, Height: 12 cm. Then click Apply to Figure.

2) Don't close Export Setup window.

Go to File à Print Preview, input same size in the Width and Height options of the paper size à Refresh

3) Click Close in Print Preview window. Go back to the Export Setup window,

click Export, then select PDF format and save it.

Side note to Mac users:

optional export as *.eps, then open in Preview and save as *.pdf

(but you can also save directly to .pdf)


… or simply use an export script

• Get current figure size

Quick test:

To save the current Matlab figure as plotXYZ.pdf, type:

figure2pdf(‘plotXYZ’)

Hint: make sure the function path is added in Matlab first!

• Adjust paper size to current figure size

• Export current figure as PDF file


Edit Vector Graphics with Inkscape

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• Edit objects (lines, text)

• Add/remove objects

• Draw lines & shapes

• Change colors (e.g. convert to BW)��

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Inkscape: Vector Graphics Editor

Drawing & Editing Tools

Tool Controls

Status Bar

www.inkscape.org


Inkscape and Bitmaps

Encoder Brake

Motor

Force Sensor

• Bitmaps can be imported into Inkscape and combined with layers of vector

graphics

• Fonts, lines & arrows are vector based

• Image remains raster image (read: pixels)à use high quality (> 150 dpi)

Encoder Brake

Motor

Force Sensor


Inkscape: Lines• Draw Line:

• Select the lines tool from the tool box

• Left click to start drawing the line, right click or press Enter to end line tool

• Edit line properties:• With the selection tool active , select the line(s) to edit

(hold shift key to make multiple selections)

• Click the line/shape properties button in the tools control bar

• Edit the line properties in the window on the right (change stroke paint, change stroke style, add arrow heads etc.)


Inkscape: Text• Create text:

• Select the text tool from the tool box

• Click in the working area where you want to place the text

• Write your text, then exit the text mode with the ESC key

• Edit text properties:• With the selection tool active , select the text filed(s) to edit

(hold shift key to make multiple selections)

• Click the text properties button in the tools control bar

• Edit the text properties in the window on the right (font, size, color etc.)

• Transfer the new properties to the selected text by clicking on


Inkscape: export *.pdf file• File à Save as

• Name the file

• Select format: *.pdf

• When asked for additional settings:

– Select “Export area is drawing”

(only export area with the drawing; to adjust PDF size to plot)

– If bitmaps were used, adjust “Resolution for rasterization”

to at least 150 dpi


2. Bibliographies


BibTeX (.bib)Writing your bibliography by hand is time consuming (both in LaTeX and other word processors)

à Use tools to import and manage your references


Literature Databases• PubMed/HubMed: www.pubmed.gov

• Google Scholar: scholar.google.com

• IEEE Xplore: http://ieeexplore.ieee.org/Xplore/home.jsp

• Research Collection ETHZ https://www.research-collection.ethz.ch


PubMed= biomedical literature: find bibtex info with

https://www.bioinformatics.org/texmed/


Google Scholar= general literature, incl. most peer-reviewed online academic journals

Note: if you don’t see the BibTeX import option, go to Settings à Search results à Bibliography manager à check box to show link


IEEE Xplore= engineering literature


Research Collection= database of publications by ETH members


@book{bishop2006pattern,Author = {Bishop, C.M. and others},Publisher = {Springer New York:},Title = {Pattern recognition and machine learning},Year = {2006}}

@conference{gassert20062dof,Author = {Gassert, R. and Dovat, L. and Lambercy, O. and Ruffieux, Y. and Chapuis, D. and Ganesh, G. and BurdetBooktitle = {Proc IEEE International Conference on Robotics and Automation (ICRA). p},Pages = {3825--3831},Title = {A 2-DOF fMRI compatible haptic interface to interact with arm movements},Year = {2006},

@article{oetiker1995not,Author = {Oetiker, T. and Partl, H. and Hyna, I. and Schlegl, E.},Title = {The not so short introduction to LATEX2$\varepsilon$},Year = {1995},

@article{choset2001coverage,Author = {Howie Choset},Journal = {The Journal of Annals of Mathematics and Artificial Intelligence},Owner = {Andreas Breitenmoser},Pages = {113--126},....

Managing Bibliographies


Managing Bibliographies

• Win/OS X/Linux: JabRef

jabref.sourceforge.net

• OS X: BibDeskbibdesk.sourceforge.net


BibDesk


JabRefUse web-search function to import…


Import Bibliography in LaTeX Report• Save file from BibDesk or JabRef as BibTeX file

(e.g. myreferences.bib).

• The exported bibliography can be included in the report with the command:

\bibliography{myreferences}

• Compile the BibTeX file first, then compile the LaTeX file twice.

• References will appear in the bibliography as soon as they are cited in the report.

• All BibTex items can be listed in the report’s bibliography

(even if they are not cited) by placing the \nocite{ref} command.


Bibliography style: plain


Bibliography style: ieeetr


Bibliography style: apalike


Can I create .bib files with other reference managers?

32

In short, yes:


3. Additional hints


Include an existing PDF


pdfpages package• Includes *.pdf files in a report

• \includepdf[<key=val>]{<filename>}

• Various options:

– Select pages to import (pages)

– Rotate pages (angle)

– Multiple pages (nup)

– Scale (scale)

– …


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Varia

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Free LaTeX Add-In for PowerPoint:

http://www.jonathanleroux.org/software/iguanatex/“…allows you to insert equations into your PowerPoint presentation”

Overleaf:

https://www.overleaf.com/“Online collaborative editor with integrated real-time preview.”Beware though: free account makes all documents public!

Beamer Templates

https://www.ethz.ch/services/en/service/communication/corporate-design/templates-for-creative-design/presentation.html


#Erwartungen/Wünsche/Ziele

38

Engineering Tools: Scientific Writing with LaTeX and ... · LaTeX and Vector Graphics Fabian Rast...

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Transcript of Engineering Tools: Scientific Writing with LaTeX and ... · LaTeX and Vector Graphics Fabian Rast...