Disease Seminar Handbook W12

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Disease Seminar Handbook BIOL*1080: Biological Concepts of Health Winter 2012 UNIVERSITY OF GUELPH

Transcript of Disease Seminar Handbook W12

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Disease  Seminar  Handbook  BIOL*1080:  Biological  Concepts  of  Health    

Winter  2012    

UNIVERSITY  OF  GUELPH  

           

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Table  of  Contents  

INTRODUCTION:  DISEASE  SEMINARS   3  

INTRODUCTION   3  OVERVIEW  OF  ASSIGNMENT   4  IMPORTANT  DATES   5    

DISEASE  CATEGORIES    -­‐  “THE  NORMAL  /BACKGROUND”   6  

WHAT  IS  HEALTH?    WHAT  IS  DISEASE?   6  BREAST  CANCER   7  DEPRESSION   10  H.  PYLORI   13  TYPE  2  DIABETES   16  INFLAMMATORY  BOWEL  DISEASE   19  OSTEOARTHRITIS   21        

EVALUATION   24  

RUBRIC:  ORAL  PRESENTATION   25  RUBRIC:  WRITTEN  ASSIGNMENT   26  RUBRIC:  PEER  EVALUATION   27    

REFERENCE  SHEETS  FOR  HOMEWORK   28  

RESOURCES   28    PRIMARY  ARTICLES     28  TEMPLATE  FOR  SEMINAR  SLIDES   29  ORGANIZING  INFORMATION   32  TIPS  FOR  POWER  POINT   33  TIPS  FOR  ORAL  PRESENTATION   34      

 

 

   

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Introduction:      This  seminar  activity  for  BIOL*1080  involves  independent  and  group  research  into  multiple  diseases  by  following  a  common  disease  template  provided  for  you.  Each  week’s  activity  and  assignment  builds  towards  the  next.    As  you  progress  through  your  individual  research,  you  will  meet  weekly  with  your  disease  group  to  discuss  your  findings  and  learn  from  your  group  members’  perspective.    This  time  will  allow  you  to  think  of  your  assigned  disease  as  a  whole  –  not  just  as  your  individual  component.    You  will  also  have  the  opportunity  to  discuss  your  topic  with  students  researching  a  different  disease  allowing  you  to  compare  similarities  and  differences  between  diseases.    You  might  be  surprised  to  see  similar  trends  across  disease  categories!        The  primary  learning  objectives  of  the  disease  seminars  are:  

1.  Learn  about  diseases  using  a  standard  template.  2.  Practice  and  improve  oral  communication  skills.  

 More  specifically,  by  the  end  of  the  disease  seminars,  successful  students  will  be  able  to:    

1. Logically  organize  information  to  effectively  communicate  ideas  orally.      2. Research  a  subject  in  the  written  literature,  distill,  convert  and  organize  the  information  

into  a  clear,  concise  story  for  oral  presentation.  3. Describe  and  participate  in  the  process  of  preparing  a  presentation.  4. Identify  and  perform  the  skills  necessary  for  an  effective  presentation.  5. Demonstrate  the  importance  of  language,  voice,  gestures,  and  visual  aids  in  an  effective  

presentation.  6. Illustrate,  through  a  public  presentation,  the  ability  to  share  information  and  increase  

audience  understanding  about  a  chosen  topic.  7. Gain  a  functional  appreciation  and  an  increased  awareness  for  their  own  oral  

presentation  style.  8. Use  feedback  to  enhance  their  presentation  skills  for  future  presentations.  

 This  handbook  will  serve  as  a  helpful  guide  as  you  start  your  research  on  your  assigned  disease  and  topic.  When  we  study  a  disease,  it  is  best  to  start  by  understanding  the  ‘normal’.    That  is  –  how  does  the  body  or  system  operate  under  non-­‐disease  conditions?    Only  once  we  understand  the  normal  function  of  the  body  can  we  start  to  uncover  the  changes  that  occur  during  the  course/progression  of  a  disease.    Then,  when  we  understand  what  changes  lead  to  disease  itself  (i.e.:  disease  pathology)  we  can  begin  to  ask  –  how  can  we  prevent  these  changes?    How  significant  do  these  changes  need  to  be  to  cause  clinical  manifestation  of  disease?    What  can  we  do  to  manage,  treat  or  reverse  the  changes?    What  impact  do  these  changes  have  on  an  individual,  their  family,  our  society?  These  will  be  the  main  questions  explored  in  the  disease  seminars.    The  information  provided  in  this  handbook  will  serve  2  main  functions.  

1. It  will  help  you  understand  the  basic  underlying  ‘normal’  physiology  of  the  body  systems  relevant  to  your  assigned  disease  so  that  you  can  start  to  build  on  it  and  uncover  disease  specific  concerns.  

2. It  will  serve  as  a  reference  guide  with  helpful  tips  and  suggestions  for  completing  your  independent  research,  written  assignment  and  oral  presentation.  

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Overview  of  Assignment      As  part  of  the  BIOL*1080  course,  the  large  lectures  are  complemented  with  weekly,  small  group  seminars.    These  seminars  are  a  mandatory  component  of  the  course  and  will  account  for  25%  of  your  final  mark.      In  the  weekly  seminars,  you  will  be  working  in  small  groups  to  research  an  assigned  disease,  and  then  present  it  orally  in  a  short  PowerPoint  presentation.      The  selected  diseases  for  the  W’12  semester  are:  

1. Breast  cancer  2. Depression  3. H.  Pylori  4. Type  2  diabetes  5. Inflammatory  bowel  disease  (IBD)  6. Osteoarthritis  

 Within  each  seminar  section,  students  will  be  assigned  to  a  research  group  of  5  and  then  each  group  will  be  assigned  one  of  the  6  diseases.    Using  a  5-­‐category  research  template  (see  below),  each  group  member  will  be  responsible  for  covering  a  distinct  aspect  of  their  assigned  disease.  These  areas  have  been  divided  as  follows:    

1. anatomy,  physiology  and  pathology  –  the  natural  course  of  the  disease  2. individual  well  being,  familial  and  societal  impact  3. risk  factors,  causes  and  preventive  interventions    4. diagnosis:  clinical  and  sub-­‐clinical  categorizations  5. therapeutic  treatments  and  post-­‐treatment  management  

 Basic  background  information  on  each  disease  category  is  found  in  this  manual  as  it  applies  to  normal  physiological  function  to  help  you  get  started.  All  additional  information  that  you  need  to  complete  your  research  will  be  gathered  independently.      During  the  first  6  seminar  sessions,  you  will  attend  your  seminar  to  meet  with  your  groups  and  work  on  the  assignment.    Each  class  will  begin  with  a  different  lesson  by  your  TA  to  help  you  progress  in  your  research  and  work  through  challenges.    A  significant  part  of  each  seminar  will  be  reserved  for  group  work  on  the  assigned  disease.  Weekly  attendance  of  all  group  members  is  crucial  in  order  to  succeed  at  the  seminar  assignment.    Please  note:  3%  of  the  final  mark  is  based  on  peer-­‐evaluation!  In  addition,  homework  assignments  will  be  given  at  the  end  of  seminars  2,  3,  4  and  must  be  handed  in  to  the  TA  at  the  beginning  of  the  following  week’s  seminar.    These  weekly  assignments  are  worth  3%  each.  In  addition,  you  will  have  an  in  class  assignment  in  seminar  #5  which  will  be  worth  1%  of  your  final  mark,  so  the  homework  assignments  together  count  for  10%  of  your  final  mark.    By  the  end  of  the  6  weeks,  each  student  will  have  prepared  3  power  point  slides  to  be  put  into  a  group  presentation  of  ~15  power  point  slides  total.    In  seminars  #  7-­‐9,  students  will  give  a  group  PowerPoint  presentation  on  their  disease  (3-­‐4  minutes  per  student,  with  each  student  talking  about  their  assigned  research  topic).    The  schedule  of  presentations  for  W12  will  be  as  follows:    

Seminar  #7  (Week  of  Feb.  27):  Breast  cancer  &  Depression  Seminar  #8  (Week  of  Mar.  5):  H.  Pylori  &  Type  2  diabetes  

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Seminar  #9  (Week  of  Mar.  12):  IBD  and  Osteoarthritis    In  addition  to  oral  communication  of  the  research,  all  students  are  to  hand  in  3  pages  of  additional  text  to  accompany  their  slides  on  the  day  of  their  presentation.    More  information  will  be  provided  about  this  (i.e.  level  of  detail  etc.)  from  your  TA  during  seminar.    Evaluation:  The  seminar  activities  are  worth  25%  of  your  final  mark,  divided  as  follows:       10%  weekly  homework  assignments  (3  at  3%  and  1  at  1%)      3%    peer  evaluation      6%    oral  communication        6%    text  and  additional  information  (to  be  handed  in  with  PowerPoint  slides)    NOTE:    if  a  student  misses  the  group  presentation  for  an  unapproved  reason  –a  grade  of  ZERO  (0)  will  be  assigned  for  both  the  oral  communication  and  additional  text  (i.e.  loss  of  10%  of  the  final  grade).    Approved  absences  will  be  dealt  with  on  a  case-­‐by-­‐case  basis.      Important  Dates:  NOTE:  Please  see  the  course  schedule  for  the  specific  dates  of  given  seminars,  as  they  change  depending  on  which  day  of  the  week  your  seminar  falls.    Seminar  #1:      

- assignment  of  groups,  overview  of  assignment  &  expectations  Seminar  #2  

- homework  given  Seminar  #3  

- homework  due,    homework  given  Seminar  #4  

- homework  due,    homework  given  Seminar  #5  

- homework  due,    in-­‐class  assignment  Seminar  #6  

- peer  evaluations  due  Seminar  #7,  #8,  #9  

- group  presentations    (see  schedule  at  top  of  page)  - slides  and  accompanying  text  to  be  handed  in  on  the  day  of  your  presentation    

 

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 What  is  health?    What  is  disease?    For  the  entirety  of  the  seminar  exercise,  keep  in  mind  that  health  can  be  defined  as  ‘physical,  mental  or  social  well-­‐being’  and  illness  is  defined  as  ‘physical,  mental  and  social  harmful  dysfunction’.    These  are  fairly  broad  definitions,  but  it  is  important  to  recognize  the  multiple  components  that  contribute  to  health.    Disease  occurs  when  the  normal  function/physiology  of  the  body  is  disrupted.  This  disruption  could  be  caused  by  several  things,  including  genetic  complications,  viral  or  bacterial  invaders  long-­‐term  accumulation  of  smaller  challenges/insults  to  the  body,  or  often  a  combination  of  factors  (eg:  genetic  susceptibility  coupled  with  lifestyle  challenges)  etc.    Regardless  of  cause,  the  main  similarity  between  all  diseases  is  that  the  normal  state  is  altered  such  that  the  control  and  communication  network  (or  the  defense  system)  cannot  correct  the  problem,  the  system  shifts  from  homeostasis  and  disease  ensues.    The  diseases  selected  for  the  fall  semester  are  divided  into  the  following  categories:    

1. Neoplastic  Disease  –  Breast  Cancer  2. Mental  Illness  -­‐  Depression  3. Infectious  Disease  –  H.  Pylori  4. Metabolic  Disease  –  Type  2  diabetes  5. Auto-­‐Immune  Disease  –  Inflammatory  bowel  disease  6. Trauma/Anatomical  Disease  –  Osteoarthritis  

 In  order  to  learn  about  these  diseases,  together  with  your  group  you  will  follow  the  template  below  to  address  numerous  aspects  of  your  assigned  disease.    

1. anatomy,  physiology  and  pathology  –  the  natural  course  of  the  disease  2. individual  well  being,  familial  and  societal  impact  3. risk  factors,  causes  and  preventive  interventions    4. diagnosis:  clinical  and  sub-­‐clinical  categorizations  5. therapeutic  treatments  and  post-­‐treatment  management  

                     

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BREAST  CANCER       You  have  been  assigned  breast  cancer  for  your  independent  research  project.    Although  many  of  you  may  be  familiar  with  the  disease  in  a  general  sense,  it  is  important  to  start  with  the  basics  of  a  healthy  biological  system  before  we  can  properly  understand  the  onset,  development,  diagnosis  and  treatment  of  breast  cancer.  It  is  always  important  to  understand  healthy  biology  before  we  can  understand  a  diseased  state!  The  following  information  has  been  compiled  from  general  health  websites  (the  National  Cancer  Institute  (NCI),  the  National  Institute  for  Health  (NIH))  and  reflects  a  basic  level  of  detail.  As  well,  reference  to  the  course  text  has  been  included.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.      1)  Basic  Anatomy  and  Histology  (non-­diseased  state):         In  order  to  understand  changes  that  occur  in  breast  cancer,  it  is  first  important  to  understand  the  anatomy  of  healthy  breast  tissue.    The  following  section  will  discuss  key  structural  features  of  breast  tissue  and  immune  response.        (a) Histology  and  development  of  the  breast    Positioned  over  the  pectoral  muscles  of  the  chest  wall  and  attached  by  fibrous  strands  called  Cooper’s  ligaments,  the  breast  is  a  mass  of  glandular,  fatty,  and  fibrous  tissues.    A  layer  of  fatty  tissue  surrounds  the  breast  glands  and  extends  throughout  the  breast.  The  fatty  tissue  gives  the  breast  a  soft  consistency.     The breast consists of:

• milk glands (lobules) that produce milk • ducts that transport milk from the milk glands (lobules) to the nipple • the nipple • areola (pink or brown pigmented region surrounding the nipple) • connective (fibrous) tissue that surrounds the lobules and ducts • fat

Figure 1: Components of the breast. Image courtesy of NCI/NIH

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The glandular tissues of the breast house the lobules and the ducts (milk passages). Toward the nipple, each duct widens to form a sac (ampulla). During lactation, the bulbs on the ends of the lobules produce milk, which is then transferred through the ducts to the nipple.

Breast  development  

For  information  on  the  basics  of  the  endocrine  system,  please  refer  to  your  textbook  Chapter  3a(iv),  The  Endocrine  System,  pages  162-­166  and  pages  174-­175  (Adrenal  Glands).    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  breast  cancer.  

Human  breast  tissue  begins  to  develop  in  the  sixth  week  of  fetal  life.  Breast  tissue  initially  develops  along  the  lines  of  the  armpits  and  extends  to  the  groin  (this  is  called  the  milk  ridge).  By  the  ninth  week  of  fetal  life,  it  regresses  to  the  chest  area,  leaving  two  breast  buds  on  the  upper  half  of  the  chest.  In  females,  columns  of  cells  grow  inward  from  each  breast  bud,  becoming  separate  sweat  glands  with  ducts  leading  to  the  nipple.  Both  male  and  female  infants  have  very  small  breasts  and  actually  experience  some  nipple  discharge  during  the  first  few  days  after  birth.    

Female  breasts  do  not  begin  growing  until  puberty.    Puberty  usually  begins  for  women  around  age  10  or  11.  After  pubic  hair  begins  to  grow,  the  breasts  will  begin  responding  to  hormonal  changes  in  the  body.  Specifically,  the  production  of  two  hormones,  estrogen  and  progesterone,  signal  the  development  of  the  glandular  breast  tissue.  During  this  time,  fat  and  fibrous  breast  tissue  becomes  more  elastic.  The  breast  ducts  begin  to  grow  and  this  growth  continues  until  menstruation  begins  (typically  one  to  two  years  after  breast  development  has  begun).    Menstruation  prepares  the  breasts  and  ovaries  for  potential  pregnancy.    

All women experience changes in their breasts throughout the life cycle. Fluctuating hormone levels during the menstrual cycle can cause changes in the look, feel, and tenderness of the breasts (Fig. 2).

 Figure  2.    Fluctuating  hormone  levels  of  the  female  adult  over  a  28  day  period.    Image  courtesy  of  Medscape  CME      

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 (b)  The  Normal  Immune  Response    For  information  on  the  basics  of  the  healthy  immune  system,  please  refer  to  pages  182-­187.          (C)  Cancer  development    For  information  on  cancer  development,  please  refer  to  page  433  of  your  text.                        

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DEPRESSION       You  have  been  assigned  depression  for  your  independent  research  project.  Before  you  can  begin  to  uncover  how  depression  develops  or  how  it  can  be  treated,  you  must  first  understand  the  normal  function  of  the  brain.  A  simplified  overview  of  general  biology  pertinent  to  this  complex  disease  has  been  compiled  for  you  so  that  you  may  become  familiarized  with  some  of  the  terminology  and  key  aspects  of  the  disease.  The  information  was  gathered  primarily  from  the  National  Institute  for  Health  and  the  National  Institute  for  Ageing  and  reflects  a  basic  level  of  detail.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.      

The  Non-­Diseased  (Normal)  State  of  the  Brain  and  Central  Nervous  System      (a) The  Healthy  Brain:      For  information  on  the  basics  of  the  normal  human  brain,  refer  to  The  Central  Nervous  System,  pages  144-­  151.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  depression.    What  does  a  healthy  brain  look  like?    What  is  its  role  in  the  body?    

To  understand  depression,  it  is  important  to  know  a  bit  about  the  healthy  brain.    The  brain  is  a  remarkable  organ.  Seemingly  without  effort,  it  allows  us  to  carry  out  every  element  of  our  daily  lives.  It  manages  many  body  functions,  such  as  breathing,  blood  circulation,  and  digestion,  without  our  knowledge  or  direction.  It  also  directs  all  the  functions  we  carry  out  consciously.  We  can  speak,  hear,  see,  move,  remember,  feel  emotions,  and  make  decisions  because  of  the  complicated  mix  of  chemical  and  electrical  processes  that  take  place  in  our  brains.     The  brain  is  made  of  nerve  cells  and  several  other  cell  types.  Nerve  cells  also  are  called  neurons.  Neurons  survive  and  function  with  the  help  and  support  of  glial  cells,  the  other  main  type  of  cell  in  the  brain.  Glial  cells  hold  neurons  in  place  (think  of  glial  cells  like  glue!),  provide  them  with  nutrients,  rid  the  brain  of  damaged  cells  and  other  cellular  debris,  and  provide  insulation  to  neurons  in  the  brain  and  spinal  cord.  In  fact,  the  brain  has  many  more  glial  cells  than  neurons—some  scientists  estimate  even  10  times  as  many.     Another  essential  feature  of  the  brain  is  its  enormous  network  of  blood  vessels.  Even  though  the  brain  is  only  about  2  percent  of  the  body’s  weight,  it  receives  20  percent  of  the  body’s  blood  supply.  Billions  of  tiny  capillaries  carry  oxygen,  glucose  (the  brain’s  principal  source  of  energy),  nutrients,  and  hormones  to  brain  cells  so  they  can  do  their  work.  Capillaries  also  carry  away  waste  products.     The  brain  has  many  parts,  each  of  which  is  responsible  for  particular  functions.  The  following  section  describes  a  few  key  structures  and  what  they  do.    For  a  3-­D  view  of  the  brain  and  its  parts,  check  out:  http://www.g2conline.org/  and  click  on  the  3-­‐D  brain  link  in  the  top  right  hand  corner.    

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The  main  players    1)  Two  cerebral  hemispheres  account  for  85%  of  the  brain’s  weight.  The  billions  of  neurons  in  the  two  hemispheres  are  connected  by  thick  bundles  of  nerve  cell  fibers  called  the  corpus  callosum.  Scientists  now  think  that  the  two  hemispheres  differ  not  so  much  in  what  they  do  (the  “logical  versus  artistic”  notion),  but  in  how  they  process  information.  The  left  hemisphere  appears  to  focus  on  details  (such  as  recognizing  a  particular  face  in  a  crowd).  The  right  hemisphere  focuses  on  broad  background  (such  as  understanding  the  relative  position  of  objects  in  a  space).  The  cerebral  hemispheres  have  an  outer  layer  called  the  cerebral  cortex.  This  is  where  the  brain  processes  sensory  information  received  from  the  outside  world,  controls  voluntary  movement,  and  regulates  cognitive  functions,  such  as  thinking,  learning,  speaking,  remembering,  and  making  decisions.    The  hemispheres  have  four  lobes,  each  of  which  has  different  roles:  

• The  frontal  lobe,  which  is  in  the  front  of  the  brain,  controls  executive  function  activities  like  thinking,  organizing,  planning,  and  problem  solving,  as  well  as  memory,  attention  and  movement.  

• The  parietal  lobe,  which  sits  behind  the  frontal  lobe,  deals  with  the  perception  and  integration  of  stimuli  from  the  senses.  

• The  occipital  lobe,  which  is  at  the  back  of  the  brain,  is  concerned  with  vision.  • The  temporal  lobe,  which  runs  along  the  side  of  the  brain  under  the  frontal  and  

parietal  lobes,  deals  with  the  senses  of  smell,  taste,  and  sound,  and  the  formation  and  storage  of  memories.  

   

2)   The  cerebellum  sits  above  the  brain  stem  and  beneath  the  occipital  lobe.  It  takes  up  a  little  more  than  10  percent  of  the  brain.  This  part  of  the  brain  plays  roles  in  balance  and  coordination.  The  cerebellum  has  two  hemispheres,  which  receive  information  from  the  eyes,  ears,  and  muscles  and  joints  about  the  body’s  movements  and  position.  Once  the  cerebellum  processes  that  information,  it  sends  instructions  to  the  body  through  the  rest  of  the  brain  and  spinal  cord.  The  cerebellum’s  work  allows  us  to  move  smoothly,  maintain  our  balance,  and  turn  around  without  even  thinking  about  it.  It  also  is  involved  with  motor  learning  and  remembering  how  to  do  things  like  drive  a  car  or  write  your  name.    3)   The  brain  stem  sits  at  the  base  of  the  brain.  It  connects  the  spinal  cord  with  the  rest  of  the  brain.  Even  though  it  is  the  smallest  of  the  three  main  players,  its  functions  are  crucial  to  survival.  The  brain  stem  controls  the  functions  that  happen  automatically  to  keep  us  alive—our  heart  rate,  blood  pressure,  and  breathing.  It  also  relays  information  between  the  brain  and  the  spinal  cord,  which  then  sends  out  messages  to  the  muscles,  skin,  and  other  organs.  Sleep  and  dreaming  are  also  controlled  by  the  brain  stem.    Other  crucial  parts  of  the  brain       Several  other  essential  parts  of  the  brain  lie  deep  inside  the  cerebral  hemispheres  in  a  network  of  structures  called  the  limbic  system.  The  limbic  system  links  the  brain  stem  with  the  higher  reasoning  elements  of  the  cerebral  cortex.  It  plays  a  key  role  in  developing  and  carrying  out  instinctive  behaviors  and  emotions  and  also  is  important  in  perceiving  smells  and  linking  them  with  memory,  emotion,  and  instinctive  behaviors.  The  limbic  system  includes:  

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• The  amygdala,  an  almond-­‐shaped  structure  involved  in  processing  and  remembering  strong  emotions  such  as  fear.  It  is  located  in  the  temporal  lobe  just  in  front  of  the  hippocampus.  

• The  hippocampus,  which  is  buried  in  the  temporal  lobe,  is  important  for  learning  and  short-­‐term  memory.  This  part  of  the  brain  is  thought  to  be  the  site  where  short-­‐term  memories  are  converted  into  long-­‐term  memories  for  storage  in  other  brain  areas.  

• The  thalamus,  located  at  the  top  of  the  brain  stem,  receives  sensory  and  limbic  information,  processes  it,  and  then  sends  it  to  the  cerebral  cortex.  

• The  hypothalamus,  a  structure  under  the  thalamus,  monitors  activities  such  as  body  temperature  and  food  intake.  It  issues  instructions  to  correct  any  imbalances.  The  hypothalamus  also  controls  the  body’s  internal  clock.  

 

     

(b)The  Normal  Functioning  of  Neurons      

For  information  on  the  normal  functioning  of  the  central  nervous  system,  please  refer  to  The  Brain/  Central  Nervous  System  3a(ii)  (pg.131-­140)  of  your  text.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  depression.            

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H.  PYLORI       You  have  been  assigned  Helicobactor  pylori  (H.pylori)  infection  for  your  independent  research  project.  Before  you  can  begin  to  uncover  how  H.pylori  develops  or  how  it  can  be  treated,  you  must  first  understand  the  normal  function  of  the  upper  gastrointestinal  tract  and  immune  system.  A  simplified  overview  of  general  biology  pertinent  to  this  complex  disease  has  been  compiled  for  you  so  that  you  may  become  familiarized  with  some  of  the  terminology  and  key  aspects  of  the  disease.  The  information  was  gathered  primarily  from  the  MedPrep,  Biology  On-­‐line,  the  National  Institute  for  Health  and  the  National  Institute  for  Ageing  and  reflects  a  basic  level  of  detail.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.        

The  Non-­Diseased  (Normal)  State      (b) The  Healthy  Upper  Gastrointestinal  (GI)Tract        For  information  on  the  basics  of  the  healthy  digestive  system  please  refer  to  Chapter  3b  (ii),  The  Digestive  System,  pages  239-­  255.    Pay  particular  attention  to  pages  239-­241  (four  basic  layers/tissues  of  the  GI  tract)  and  pages  244-­248  (the  esophagus,  stomach,  and  small  intestine).    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  H.pylori.        (c) The  Healthy  Immune  System      

For  information  on  biological  cell  defense/immune  response,  please  refer  to  3a(v)  The  Local  Support  &  Defense  System  (p.182-­197)  in  your  text.    Pay  particular  attention  to  pages  182-­186.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  H.pylori  infections.    (c)The  Basics  of  a  Bacterium  

Bacteria are unicellular (microscopic) prokaryotes which lack membrane bound organelles like mitochondria, golgi apparatus and endoplasmic reticulum. Bacteria range in size from 0.15 to 4 micrometers. Bacteria are found in soil, in water, and in the air. They are also found on plants, on the surfaces of decayed or decaying matter, and in the digestive and reproductive tracts of humans and other animals.

A bacterial cell consists of a tiny mass of cytoplasm surrounded by three distinct layers: the cytoplasmic membrane, the cell wall, and the capsule (Fig.1).

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Within the cytoplasm is DNA, material containing genetic information. Unlike that of higher organisms, the DNA of bacteria is not enclosed in a membrane-bound structure, or nucleus. Some strains of bacteria have flagella that enable them to move with a swimming motion, or pili that help them adhere to certain surfaces (Fig.1). Some bacteria contain a special substance that allows them to emit light by a process called bioluminescence.

Figure  1:  General  bacterium.    Courtesy  of    http://www.singleton-­‐associates.org/bacteri2.htm

Bacteria occur in a wide range of environments, but are most abundant in moist and moderate temperature climates. Most bacteria are heterotrophic; that is, they obtain food from other organisms; while others are autotrophic, or manufacture their own food. Heterotrophic bacteria usually feed on dead organic matter, although some species are parasitic. Most autotrophic bacteria use energy from sunlight to manufacture food by photosynthesis. Heterotrophic and autotrophic bacteria can be either aerobic or anaerobic. Aerobic bacteria live in environments in which free (molecular) oxygen is present; anaerobic bacteria live in environments in which free oxygen is absent.

Bacteria generally reproduce by binary fission. Under favorable conditions, an adult organism splits apart to form two new organisms. Bacteria multiply rapidly, often doubling their population every 20 minutes. Some bacteria reproduce by budding, a process in which a small outgrowth from a single parent develops into a new, identical organism. A few bacteria can reproduce sexually (conjugation) under certain conditions. In this case two bacteria unite to form a zygote, which then splits into new cells. Some bacteria form colonies that may become large enough to be seen with the unaided eye.

 Based on cell wall composition, bacteria can be separated into two groups; Gram-positive and Gram-negative. These bacteria react to the stain called as the Gram stain. The cell wall of the Gram-positive bacteria is made up of many layers of peptidoglycan and teichoic acids. The gram-negative bacteria have a slightly thinner cell wall made up of a few layers of peptidoglycan. They are

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surrounded by another layer of lipid membrane containing lipo-polysaccharides and lipoproteins. Most bacteria have the Gram-negative cell wall.

Figure 2: The cell wall composition of Gram-positive and Gram-negative bacteria.

Courtesy of http://silverfalls.k12.or.us/staff/read_shari/mysite/chapter_24_ab.htm

Figure 3: The cell wall composition of Gram-positive and Gram-negative bacteria. Courtesy of ht http://www.websters-online-dictionary.org

Classification of Bacteria  Bacteria  are  generally  classified  by  two  methods.  The  simplest  and  oldest  method  is  by  shape.  The  three  principal  categories  are  bacilli,  cocci,  and  spirilla.    Bacilli  are  rod-­‐shaped  and  the  most  numerous  of  all  types.    They  include  coccobacilli  and  streptobacilli.    Coci  are  a  spherical  bacteria,  and  are  divided  into  bacteria  that  occur  in  pairs  (ex.  Diplococci),  in  clusters  (ex.  Staphylococci),  and  chains  (ex.streptococci).    Spirilla  are  spiral  shaped  bacteria,  and  are  the  least  numerous  type.  The  second  method  of  classification  is  based  on  other  characteristics,  such  as  size,  color,  and  chemical  composition,  and  thus  are  grouped  into  Phylum.                  

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TYPE  2  DIABETES       You  have  been  assigned  type  2  diabetes  mellitus  (T2DM)  for  your  independent  research  project.    Although  many  of  you  may  be  familiar  with  the  disease  in  a  general  sense,  it  is  important  to  start  with  the  basics  of  a  healthy  biological  system  before  we  can  properly  understand  the  onset,  development,  diagnosis  and  treatment  of  T2DM.  It  is  always  important  to  understand  healthy  biology  before  we  can  understand  a  diseased  state!  The  following  information  has  been  compiled  from  general  health  websites  and  reflects  a  basic  level  of  detail.  As  well,  reference  to  the  course  text  has  been  included.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.      

The  Non-­Diseased  (Normal)  State  of  the  Pancreas,  and  Glucose  Homeostasis    a) The  Healthy  Pancreas  and  Liver    For  information  on  the  normal  functioning  of  hormones,  and  especially  the  pancreas,  please  refer  to  pages  164-­165  (general  info),  178-­180  (pancreas),  250-­251  (liver)  of  your  text.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  T2DM.    The  healthy  pancreas  The  pancreas  is  a  relatively  small  organ  that  is  located  in  the  abdomen,  posterior  to  the  stomach.  It  is  comprised  of  millions  of  islets,  called  islets  of  Langerhans  (called  after  the  German  pathologist  who  first  described  them),  whose  role  is  to  secrete  hormones  in  response  to  metabolic  demands.  The  pancreas  also  has  a  role  in  the  digestive  system,  as  it  secretes  pancreatic  juice,  a  necessary  component  to  neutralize  the  acidity  of  the  food  as  it  exits  the  stomach.    

 Figure  1:  Location  and  structure  of  the  pancreas.  

   

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The  healthy  liver  The liver, lying on the top right of the abdomen, just under the diaphragm, is the controller of body in the sense that it has to check-and-balance all the extra, unneeded and hazardous substances that one ingests or produces in the body. Dealing with the toxic and nontoxic (but hazardous if in excess) chemicals, liver serves as a guard for the body, and in a way as an internal line of defense. As a result, any disease that causes a change in the structure or function of the liver can cause significant problems for the entire body. Of interest here, the liver is able to store excess glucose as glycogen during feeding time. This glycogen can later be broken back down to glucose and use as energy fuel for the entire body during fasting or in-between meals. b) The  Principles  Behind  Glucose  Homeostasis    Why  is  it  important  to  regulate  blood  glucose  concentrations?  Glucose,  a  simple  carbohydrate,  is  the  main  source  of  energy  for  our  body  and  allows  growth,  thinking,  physical  activity,  temperature  regulation,  etc.  Every  organ  (e.g.  skeletal  muscle,  liver,  adipose  tissue)  in  our  body  can  use  glucose  to  function,  but  the  brain  uses  ONLY  glucose  as  an  energy  source.  Therefore,  maintaining  blood  glucose  concentrations  within  a  safe  range  is  crucial  for  health  and  well-­‐being.  In  healthy  individuals,  blood  glucose  concentrations  vary  between  4-­‐7  mmol/L  throughout  the  course  of  a  day.  Blood  glucose  levels  falling  below  this  range  may  be  dangerous  for  cognitive  functions  and  can  lead  to  fainting  and  coma.  Blood  glucose  levels  above  this  range  may  lead,  in  the  long-­‐term,  to  renal,  visual,  and  nerve  problems.      How  do  hormones  (insulin  and  glucagon)  help  in  regulating  blood  glucose  concentrations?    When  we  ingest  carbohydrates,  they  are  broken  down  into  glucose  (among  others),  and  absorbed  from  the  small  intestine  into  the  blood  stream.  Glucose  is  a  major  source  of  energy  used  by  the  brain,  skeletal  muscle,  liver,  etc.  However,  before  glucose  can  be  used  as  an  energy  substrate  by  the  cells,  it  needs  to  enter  the  cells.  This  is  one  of  the  main  roles  of  insulin.    As  we  eat,  glucose  builds  up  in  the  circulation,  and  this  sends  a  signal  to  the  pancreas  to  release  insulin,  a  hormone.  Once  insulin  is  released  into  the  blood,  it  binds  to  receptor  on  the  cell  surface  of  many  tissues.  Here,  let’s  talk  about  skeletal  muscle,  as  it  is  one  of  the  main  tissues  involved  in  T2DM  (but  the  same  process  also  occurs  in  liver  and  adipose  tissue).  Insulin  binds  to  its  receptor  on  skeletal  muscle  the  same  way  a  key  would  fit  into  a  lock.  This  enables  the  transport  of  glucose  from  the  blood  into  the  skeletal  muscle  cell.  The  cell  can  then  use  the  glucose  to  produce  energy,  or  store  it  as  glycogen  for  later  use.  

 Between  meals,  the  levels  of  glucose  in  the  blood  stream  decreases:  this  is  the  signal  to  the  pancreas  to  secrete  glucagon,  another  hormone.  Glucagon’s  role  is  opposite  to  that  of  insulin:  it  sends  a  message  to  the  cells  to  release  glucose  into  the  circulation.  Glucagon  mostly  ‘speaks’  with  the  liver,  because  the  liver  has  the  ability  to  produce  glucose.  It  does  so  by  breaking  down  glycogen  into  glucose,  and  releasing  this  glucose  in  the  blood.          In  healthy  individuals,  the  pancreas  knows  exactly  how  much  insulin  and  glucagon  are  required  and  at  what  time,  depending  on  the  glucose  concentrations  in  the  blood.  It  does  not  secrete  too  little  or  too  much,  which  keeps  blood  glucose  levels  within  a  normal  range.    

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     What  is  insulin  sensitivity?  Insulin  sensitivity  refers  to  the  ability  of  organs,  namely  skeletal  muscle  and  liver,  to  respond  to  the  insulin  in  the  blood.  In  other  words,  in  an  insulin  sensitive  individual,  when  insulin  binds  to  its  receptor  (i.e.  when  the  key  is  inserted  into  the  lock),  it  enables  glucose  to  enter  the  cell  (i.e.  the  door  opens).  In  some  disease  states,  despite  the  interaction  of  insulin  with  its  receptor  (i.e.  the  key  in  its  lock),  cells  are  not  responsive  to  insulin  and  the  glucose  is  unable  to  enter  the  cells  (i.e.  the  door  remains  closed):  this  is  called  insulin  resistance.                                      Figure  2:  Regulation  of  blood  glucose  level  by  insulin  and  glucagon.        

                 

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INFLAMMATORY  BOWEL  DISEASE       You  have  been  assigned  inflammatory  bowel  disease  (IBD)  for  your  independent  research  project.    Although  many  of  you  may  be  familiar  with  the  disease  in  a  general  sense,  it  is  important  to  start  with  the  basics  of  a  healthy  biological  system  before  we  can  properly  understand  the  onset,  development,  diagnosis  and  treatment  of  IBD.    It  is  always  important  to  understand  healthy  biology  before  we  can  understand  a  diseased  state!  The  following  information  has  been  compiled  from  general  health  websites  and  reflects  a  basic  level  of  detail.  As  well,  reference  to  the  course  text  has  been  included.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.      The  Non-­Diseased  (Normal)  State      (a)  The  Healthy  Gastrointestinal  (GI)  Tract    For  information  on  the  basics  of  the  healthy  digestive  system  please  refer  to  Chapter  3b  (ii),  The  Digestive  System,  pages  239-­  255.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  IBD.      (b)  The  Normal  Immune  Response    

For  information  on  the  normal  immune  system/response,  refer  to  Chapter  3a(v)  (pg.188-­200):  The  Local  Support  &  Defense  System.  Pay  particular  attention  to  pages  188-­189.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussion  of  the  immune  response  in  IBD.        What  is  a  normal  immune  response?    What  is  its  role  in  the  body?       In  order  to  understand  what  is  happening  when  a  person  has  IBD  it  is  necessary  to  know  a  little  about  how  the  healthy  immune  system  works.  The  immune  system  -­‐  a  complex  network  of  specialized  cells  and  organs  -­‐  defends  the  body  against  attacks  by  foreign  invaders  such  as  bacteria,  viruses,  fungi,  and  parasites.  It  does  this  by  seeking  out  and  destroying  the  invaders  as  they  enter  the  body.  Substances  capable  of  triggering  an  immune  response  are  called  antigens.     Now  you  might  be  wondering  –  how  does  the  immune  system  know  what  is  foreign  and  how  does  it  know  what  is  native?  Why  are  we  able  to  recognize  bacteria  such  as  e-­‐coli  as  foreign  while  at  the  same  time  allowing  millions  of  bacteria  to  happily  flourish  in  our  gut?  Why  are  we  able  to  tolerate  our  own  lungs,  but  often  transplant  patients  reject  a  set  of  lungs  from  a  donor?    The  following  sections  should  help  to  clarify  these  questions.         Amazingly,  (but  definitely  not  by  magic!),  the  immune  system  displays  both  enormous  diversity  and  extraordinary  specificity.  It  can  recognize  millions  of  distinctive  foreign  molecules  and  produce  its  own  molecules  and  cells  to  match  up  with  and  counteract  each  of  them.  In  order  to  have  room  for  enough  cells  to  match  the  millions  of  possible  foreign  invaders,  the  immune  system  stores  just  a  few  cells  for  each  specific  antigen.  When  an  antigen  appears,  those  few  

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specifically  matched  cells  are  stimulated  to  multiply  into  a  full-­‐scale  army.  Later,  to  prevent  this  army  from  over-­‐expanding,  powerful  mechanisms  to  suppress  the  immune  response  come  into  play.    

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OSTEOARTHRITIS       You  have  been  assigned  osteoarthritis  (OA)  for  your  independent  research  project.    Although  many  of  you  may  be  familiar  with  the  disease  in  a  general  sense,  it  is  important  to  start  with  the  basics  of  a  healthy  biological  system  before  we  can  properly  understand  the  onset,  development,  diagnosis  and  treatment  of  OA.    It  is  always  important  to  understand  healthy  biology  before  we  can  understand  a  diseased  state!  The  following  information  has  been  compiled  from  general  health  websites  and  reflects  a  basic  level  of  detail.  As  well,  reference  to  the  course  text  has  been  included.    Be  sure  to  read  and  understand  this  information  before  beginning  your  research.      The  Non-­Diseased  (Normal)  State      (a)Healthy  Connective  and  Muscle  Tissue      For  information  on  the  basics  of  connective  tissue  and  muscle  tissue,  please  refer  to  Chapter  1D  From  Cells  to  Organs  located  on  pages  56-­63.    Pay  particular  attention  to  pages  57-­‐60.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussions  of  OA.    As  you  likely  have  come  across,  a  joint  is  the  location  where  two  or  more  bones  come  together,  such  as  the  hip  or  knee.    The  bones  of  a  joint  are  covered  by  a  smooth  and  spongy  material  called  cartilage.    Cartilage  allows  the  joint  to  move  smoothly,  without  pain.    In  addition,  the  joint  is  lined  by  synovium;  a  thin  layer  of  tissue  which  produces  a  slippery  fluid  called  synovial  fluid  that  nourishes  the  joint  and  helps  reduce  friction.    Ligaments  are  strong  bands  of  tissue  that  connect  the  bones  and  stabilize  the  joint  in  addition  to  muscles  and  tendons  to  enable  movement  (Fig.1)              

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Figure  1.    The  Normal  Joint.    Courtesy  of  Arthritis  Ireland.    Cartilage  is  composed  of  chondrocytes  and  an  extracellular  matrix  of  water,  collagen,  proteoglycans,  in  addition  to  other  components  such  as  adhesives  and  lipids.    Cartilage  is  sub-­‐divided  into  several  different  types:  hyaline,  elastic,  and  fibrocartilage.    Please  refer  to  your  textbook  in  the  assigned  reading  pages  (above)  for  a  description  of  each  of  these  types  of  cartilage!  Unlike  other  connective  tissues,  cartilage  does  not  contain  blood  vessels.    Because  of  this,  it  heals  very  slowly.      

Composition of hyaline cartilage

Chondrocytes: Chondrocytes are important in the control of matrix turnover through production of: collagen, proteoglycans, and enzymes for cartilage metabolism.

Matrix: Water distribution varies, making up 65% of wet weight at the deep zone and 80% at the surface. Weight bearing capacity is made possible through regional changes in water content which allow deformation of the cartilage surface in response to stress. The matrix also provides nutrition and lubrication of cartilage.

Proteoglycans: Proteoglycans provide compressive strength and regulate matrix hydration by providing a porous structure to trap and hold water. Proteoglycans are composed of subunits of glycosaminoglycans (GAG’s - disaccharide polymers): chondroitin-4-sulfate (decreases with age), chondroitin-6-sulfate, keratin sulfate (increases with age). GAG’s are bound to a protein core by sugar bonds to form a proteoglycan aggrecan molecule. Aggrecan molecules are further stabilized by link proteins which bind them to hyaluronic acid to form a proteoglycan aggregate (Fig. 2).

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Figure 2: Proteoglycan aggregate. Courtesy of World Ortho.

Adhesives: Adhesives that mediate the molecular interactions between chondrocytes and collagen fibrils are fibronectin, chondronectin and anchorin CII. Lipids are present in cartilage but their function is unknown.

Collagen: Hyaline cartilage is mainly composed of type II collagen. Collagen forms a cartilaginous framework to provide tensile strength. Collagen molecules and proteoglycans interweave to form cartilage (Fig. 3).

Figure 3: Interweaving of proteoglycans and collagen fibrils. Courtesy of World Ortho.

 

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(b) The  Normal  Immune  Response    

For  information  on  the  normal  immune  system/response,  refer  to  Chapter  3a(v)  The  Local  Support  and  Defense  System  located  on  pages  182-­197.    Pay  particular  attention  to  pages  186-­187.    By  no  means  are  you  expected  to  memorize  everything  in  the  chapter,  but  you  will  likely  find  it  to  be  a  great  resource  for  definitions  and  figures  to  help  orient  yourself  when  reading  more  complex  discussion  of  the  immune  response  in  OA.                                    Evaluation:    Homework  Assignments:    There  are  3  take  home  assignments  due  as  part  of  the  disease  seminars,  each  worth  3%  of  your  final  grade.    Homework  is  assigned  during  seminar  #2,3,4  and  is  due  during  the  first  5  min  of  the  following  week’s  seminar.    During  seminar  #5,  you  will  have  an  in  class  assignment  to  complete  and  submit  before  the  end  of  the  seminar  period.    All  homework  assignments  are  graded  out  of  5  possible  marks,  as  follows:    5  –  Outstanding     Student  has  gone  above  and  beyond  the  basic  requirements  of  the  assignment.      

 Research  is  detailed,  clear,  well-­‐organized  and  expands  on  the  students  knowledge.    All  formatting  guidelines  were  properly  followed.  

4  –  Well  Done     Student  has  completed  all  aspects  of  the  assignment  correctly  as  outlined  by  the  TA.     Formatting  has  been  followed  correctly  and  an  appropriate  level  of  detail  was  included.  3  -­  Good  

 Student  completed  the  homework  as  assigned,  but  only  with  a  general  level  of  detail  in  research  or  had  some  errors  in  formatting/style.    More  examples  or  interpretation  could  be  included.  

2  –  Needs  Improvement    Student  had  one  or  more  major  errors  in  the  assignment.    The  level  or  research  or  interpretation  is  lacking  for  a  university  level  assignment.  

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1  –  Incomplete/  Unsatisfactory    Homework  was  submitted,  but  lacked  key  components,  showed  minimal  research  and/or  included  major  issues  with  style.  

0  –  Did  not  submit/Academic  Misconduct     Assignment  was  not  submitted  within  the  first  5  minutes  of  the  assigned  seminar  or       included  evidence  of  academic  misconduct  (plagiarism),  whether  intentional  or  not.    For  all  homework  assignments,  please  follow  these  important  formatting/style  guidelines,  unless  otherwise  stated  by  your  TA:  

1. 1  page  maximum    2. Double  spaced  3. 12  pt,  black  font,  1’  margins,  Times  New  Roman  font  4. Properly  referenced  (see  writing  effectively  online  workshop)  

a. including  in  text  citations  and  full  citations  at  the  end    5. All  figures  must  be  cited.  6. 2  copies  of  your  homework  are  required.  7. All  homework  is  due  within  the  first  5  minutes  of  your  assigned  seminar.      

-­‐ NO  exceptions  will  apply.  -­‐ Any  challenge  for  illness  or  compassionate  grounds  must  be  sent  to  the  course  

coordinator:  Nicolette  Bradley    [email protected]        Final  Assignment  Rubrics    Below  you  will  see  a  rubric  that  has  been  developed  to  evaluate  your  oral  communication,  presentation  style  and  the  text/research  that  accompanies  your  specific  disease  topic.    By  referring  to  this  rubric  when  conducting  your  research  or  practicing  your  portion  of  the  oral  presentation,  you  will  be  able  to  see  what  key  features  are  being  evaluated.  For  example,  as  part  of  your  oral  communication,  the  TA  will  be  looking  for  professional  body  language,  eye  contact,  good  volume  in  your  voice,  and  a  relaxed  pace.    As  for  the  layout  of  your  power  point  slides,  you  will  be  evaluated  for  your  use  of  figures  and  text,  as  well  as  the  organization  of  information  on  your  slides.    Also,  they  should  be  visually  appealing  with  large  font  and  appropriate  use  of  colour  with  little  distractions.  Finally,  you  will  be  asked  to  hand  in  a  hard  copy  of  your  3  power  point  slides  as  well  as  3  pages  of  text,  expanding  on  the  information  on  the  slides  themselves.    This  information  will  be  marked  for  the  accuracy  and  demonstration  of  comprehension.    The  information  can  be  gathered  from  multiple  reputable  sources  but  should  be  focused  to  the  topic  of  the  disease  of  which  you  were  assigned  and  must  be  written  in  your  own  words.    

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Detailed Explanation of Disease Tutorial Marking Rubric

CRITERIA Level 4 (1)

Level 3 (0.8)

Level 2 (0.65)

Level 1 (0.5)

Level 0 (0)

Oral Communication Voice

- Volume - Inflection - Articulate

Excellent clear voice, very articulate, appropriate volume and effective enthusiasm. Speaks clearly and distinctly all of the time with no mispronunciations.

Clear, articulate, good volume, enthusiastic. Speaks clearly and distinctly with few mispronunciations.

Less clear or articulate, harder to hear, little enthusiasm. Speaks clearly and distinctly most of the time with some mispronunciations

Not clear or articulate, difficult to hear, monotone, with little or no expression. Often can not be understood or mispronounces many words

The student did not meet the minimum requirements for unapproved reasons.

Speech - Complete

sentences - Vocabulary - Fillers

Excellent use of vocabulary. Sentences are simple, clear and complete. Student does not rely on fillers (um, uh, like).

Vocabulary is appropriate and sentences are complete. Minimal reliance on fillers (um, uh, like).

Vocabulary less appropriate (some use of slang/jargon), sentences are complete. Student often uses fillers (um, uh, like).

Difficulties with appropriate vocabulary and sentences incomplete/halting. Student frequently resorts to fillers (um, uh, like).

The student did not meet the minimum requirements for unapproved reasons.

Body - Eye Contact - Posture - Body language

Student presents naturally like a planned conversation and maintains effective eye contact. Body language is professional and appropriate throughout entire group presentation.

Student seldom uses notes and makes eye contact most of the time. Body language is professional throughout most of the group presentation.

Reading presentation at least half of the time, makes eye contact a few times. Student is conscious of posture and appears tense. Fidgeting is distracting at times.

Student reads all or most of presentation, minimal direct eye contact. Posture is informal and distracting. Student frequently fidgets.

The student did not meet the minimum requirements for unapproved reasons.

Organization - Main points - Pace/timing - Flow

Student has obviously rehearsed. Main points are clear and linked. Student speaks at a good pace; pauses where appropriate and is never rushed. Makes excellent use of time allotted.

Student could use an extra rehearsal to polish up. Main points are identified. Student’s speaks at a good pace. Presentation is slightly over or under the allotted 3 min time.

Student could use a few more rehearsals. Main points are difficult to decipher or not clearly linked. Student’s speech is rushed and not planned. Significantly over or under allotted 3 min time.

It is clear that rehearsals were lacking. Student does not seem prepared to present. Main points are not clearly evident. Speech is unorganized and distracted with little concept of allotted time.

The student did not meet the minimum requirements for unapproved reasons.

Slide Layout - Figures & text - Font - Colour

Slides are clear, logical and effectively enhance the presentation. Graphics used significantly add to the presentation. They are very effective, clear, simple and easy to see. Excellent use of colour and font size with no unnecessary distractions.

Slides are clear and well organized. Graphics are connected to presentation. Graphics are clear and simple, easy to see. Good use of colour and font size with only slight distractions.

Slides are clear but would benefit from more attention. Graphics used loosely support presentation, are busy, overly detailed or difficult to see. Font choice and colour or animations are distracting at times.

Slides are bare or overly busy. Graphics used do not support presentation, are not clear, busy/cluttered and difficult to see. Font is difficult to read and colour distracts from the presentation.

The student did not meet the minimum requirements for unapproved reasons.

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Detailed Explanation of Disease Tutorial Marking Rubric

CRITERIA Level 4

(1) Level 3

(0.8) Level 2 (0.65)

Level 1 (0.5)

Level 0 (0)

Background Information & Written Notes Accuracy

Information provided is accurate, up to date and considers the full perspective of the disease. Facts are precise and explicit. Student is able to distinguish essential information for completing the project, while adding interest to enhance the project.

Information provided is accurate and current. Student is able to distinguish essential information for completing the project.

Information provided contains some factual errors or is outdated. Student only identified some of the pertinent information.

Information provided was inaccurate or outdated; the facts in this project are misleading to the audience. Student was unable to select the relevant and essential information to complete the project. Irrelevant data is included.

The student did not meet the minimum requirements for unapproved reasons.

Mastery of Content

Content is focused and specific to the assigned topic. All key areas were fully addressed. Topic was dealt with in great depth, i.e. points clearly made, enough examples given and shows a thourough understanding of concepts, facts and terms.

Content relates to assigned topic with few tangents. All key points were addressed. Topic was dealt with in depth, but could benefit from more examples or further development in particular areas.

Content attempted to address assigned topic, but was inaccurate or irrelevant at times. Some critical points were missed. Some topic areas were handled on a superficial level. Further development is needed is some areas.

Content did not address the assigned topic. Critical points were incorrect or missing. Assignment was dealt with in a very superficial manner. Evidence of knowledge of the subject under study is lacking.

The student did not meet the minimum requirements for unapproved reasons.

Understanding

Shows a full understanding of the topic. Student is able to explain relevant information within the context of the disease as a whole.

Shows a good understanding of the topic. Student is able to explain relevant information as it pertains to their specific topic.

Shows a fair understanding of parts of the topic. Student ability to explain relevant information is somewhat limited.

Does not seem to understand the topic well. Information is listed but the student does not explain the relevance of it.

The student did not meet the minimum requirements for unapproved reasons.

Organization & Style

Relevant and essential information presented in a logical and interesting sequence that enhanced the assignment. Notes are clear, complete and very well written in the student’s own language with no grammatical errors.

Relevant and essential information is organized. Clear links are made between ideas. Notes are well written in the student’s own language with only minor grammatical errors.

Information presented is lacking a clear order at times. Bridges between ideas are evident but weak. Evidence of difficulty with paraphrasing at times. Extra edits could have helped clear up grammatical errors.

Notes are difficult to follow with no obvious structure. Information is scattered and fragmented. Content is not properly paraphrased. Evidence of major grammatical errors.

The student did not meet the minimum requirements for unapproved reasons.

References

Student used wide variety of resources that enrich project. Referencing is consistent and complete with no errors.

Student used many reputable sources, with only minor referencing errors.

Limited resources were used. Several referencing errors or omissions were made.

Student did little information gathering or used non-reputable sources. Many referencing errors or omissions were made.

The student did not meet the minimum requirements for unapproved reasons.

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Peer  evaluation  Rubric    CRITERIA   Level  3  

(1)  Level  2  (0.75)  

Level  1  (0.5)  

Level  0  (0)  

Gather  Information  

 

Collects  a  great  deal  of  information  on  the  topic  

Collects  some  basic  information  on  the  topic  

Collects  very  little  information  on  the  topic  

Does  not  collect  any  information  on  the  topic  

Participate  in  Discussion  

Enthusiastically  participate  in  discussion  to  accomplish  task  

Willing  to  participate  in  discussion  to  accomplish  task  

Occasionally  participate  in  discussion  to  accomplish  task  

Does  not  take  part  in  discussion  to  accomplish  task  

Be  sensitive  to  others’  feelings    

 

Very  willing  to  listen  and  is  sensitive  to  others’  feelings  and  learning  needs  

Shows  sensitivity  to  others’  feelings  and  willing  to  listen  to  others’  opinions  

Sometimes  needs  occasional  reminder  to  be  sensitive  to  others’  feelings  

Show  no  respect  to  others’  feelings  

Cooperate  with  team  members    

Takes  up  any  task  assigned  enthusiastically  

S  Willing  to  take  up  most  tasks  assigned  

Takes  up  some  tasks  assigned  when  urged  

Always  argues  with  team  members  and  refuses  to  do  any  work  

Availability  for  group  work  

Attended  all  seminars  and  responded  rapidly  to  emails.  

Occasionally  missed  seminar,  but  was  accessible  via  email.  

Frequently  missed  seminar  and  did  not  respond  well  to  email.  

Never  met  with  group  for  work.  

    Student  

#1  Student  #2  

Student  #3  

Student  #4  

Student  #5  

Student  #6  

NAME:                

Gather  Information    

           

Participate  in  Discussion    

           

Be  sensitive  to  others’  feelings    

           

Cooperate  with  team  members    

           

Availability  for  group  work  

           

TOTAL:      

           

   

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Suggested  Internet  Resources  for  Seminars      Internet  (General):  Medline  (US  National  Library  of  Health)   www.nlm.nih.gov/medlineplus    National  Institute  for  Health     www.nih.gov    Centers  for  Disease  Control  and  Prevention     www.cdc.gov    Health  Canada     www.hc-­‐sc.gc.ca    Mayo  Clinic     www.mayoclinic.com    Public  Health  Agency  of  Canada     www.phac-­‐aspc.gc.ca World  Health  Organization     http://www.who.int/en/    Statistics  Canada     http://www.statcan.gc.ca/start-­‐debut-­‐eng.html    A.D.A.M.  Medical  Encyclopedia     http://www.nlm.nih.gov/medlineplus/encyclopedia.html    Internet  (Disease  Specific):  Canadian  Cancer  Society     http://www.cancer.ca    Canadian  Mental  Health  Association     www.cmha.ca      The  Arthritis  Society     www.arthritis.ca    National  Institute  of  Diabetes  and  Digestive  and  Kidney  Diseases  (NIDDK)     www.niddk.nih.gov  Canadian  Liver  Foundation     www.liver.ca  Crohn’s  and  Colitis  Foundation  of  Canada  

www.ccfc.ca    Primary  Literature:  Pubmed     www.ncbi.nlm.nih.gov/pubmed    University  of  Guelph  Library  Journal  Collection  –  (TUG,  other  request  forms)     www.lib.uoguelph.ca        

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Template  for  Seminar  Slides    

The  following  template  is  meant  to  be  a  guide  when  researching  you  topic  and  preparing  your  presentation.    These  questions  are  suggestions  to  help  divide  your  research  into  3  main  ideas,  which  could  be  helpful  when  preparing  your  3  allotted  power  point  slides.    You  are  not  required  to  follow  it  exactly.    All  diseases  are  different  and  you  may  find  that  certain  areas  need  to  be  developed  further  while  other  areas  can  be  handled  more  briefly.    That  is,  equal  time  and  equal  emphasis  does  not  need  to  be  placed  on  each  of  the  components  within  your  assigned  topic,  as  long  as  they  are  all  acknowledged.    Part  of  this  seminar  exercise  is  to  be  able  to  identify  important  information  and  teach  it  to  your  classmates  in  a  meaningful  way.    The  primary  goal  of  the  seminar  activity  is  to  learn  about  different  disease  categories  using  a  common  template  while  also  being  introduced  to  basic  scientific  communication  in  the  process.    You  are  not  expected  to  be  an  excellent  public  speaker,  but  you  are  expected  to  have  a  solid  understanding  of  your  assigned  disease  as  a  whole,  and  think  critically  about  other  diseases  based  on  weekly  in-­‐class  discussions.    1)  Anatomy,  physiology  and  pathology  –  natural  course  of  the  disease  

• Anatomy:    •   Which  organs/tissues  are  primarily  affected?  •   What  is  the  normal  function  of  these  tissues?  • Physiology:      •   Expand  on  anatomy  –  how  does  the  biological  system  normally  work?  • Pathology:  •   What  goes  wrong  in  the  disease?  •   Explain  the  natural  course  of  the  disease    •   This  might  require  2  slides.  •   A  figure  is  often  helpful  here.  

 2)  Individual  well  being,  familial  and  societal  impact  

• Individual:  •   How  does  the  disease  affect  the  individual?  •   How  does  daily  living  change?  • Familial:  •   Does  the  disease  cause  a  large  burden  impact  on  the  family?    How?  • Societal:  •   What  impact  does  the  disease  have  on  society  as  a  whole?      •   What  is  the  economical  cost?    Is  there  a  social  responsibility  to  deal  with  disease?  • NB:  Depending  on  the  disease,  one  of  these  sections  may  require  2  slides  while  the  other  2  

sections  may  be  able  to  be  combined.    3)  Risk  factors,  causes  and  preventative  measures  

• Risk  Factors:  •   What  factors  would  put  someone  at  risk  of  developing  this  disease?  •   Consider  genetics,  lifestyle,  environment  etc.  

 • Causes:  •   What  actually  causes  the  disease?      

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•   Is  it  one  factor  (i.e.:  a  gene,  exposure  to  a  virus)  or  a  combination  of  several     factors?  

•     Does  the  disease  progress  over  time  or  does  it  just  occur  at  a  single  time  point?  • Prevention:  •   Is  there  any  way  to  prevent  the  disease?  •   Can  lifestyle  modifications  prevent  or  at  least  delay  development  of  the  disease  or  

  its  symptoms?    4)  Diagnosis:  clinical,  and  sub-­clinical  classifications  

• Diagnosis:  •   How  is  the  disease  diagnosed?    •   Is  there  one  test  that  is  classically  used?    Are  several  tests  used?      •   How  do  the  tests  work?  i.e.:  explain  the  physiology  behind  them  • Clinical  classification  •     Are  there  different  stages  of  the  disease?  •   What  key  biomarkers  are  used  to  distinguish  between  levels  disease?    •   Are  all  individuals  with  the  disease  actually  diagnosed?    Can  you  have  the  disease  

  and  not  know?  • Sub-­‐clinical  classification:  •   Do  sub-­‐clinical  populations  exist?    That  is,  can  you  have  “pre-­‐disease  x”  (eg:  pre  

  diabetes  vs.  diabetes)  •   If  so,  do  sub-­‐clinical  cases  always  develop  into  clinical  cases?  •   What  is  the  typical  time  frame  between  sub-­‐clinical  and  clinical  diagnosis?  

 5)  Physician  Prescribed  Treatments,  Complementary  Alternative  Medicine  and  Post-­Treatment  Management  

• Physician  Prescribed  Treatments:  •   What  treatments  exist  for  the  disease?  (eg.  drugs,  surgery…)  •   If  the  disease  treated  with  drugs  –  consider  their  mechanism  of  action  (ie:  what  to  

  they  target/why  do  they  work)  •   Are  new  cutting  edge  treatments  currently  being  studied?  •   Do  these  treatments  cure  the  disease,  or  just  treat  the  symptoms?  • Complementary  Alternative  Medicine:    •   Are  alternative  therapies  common  (ie:  natural  remedies,  Chinese  medicine     etc)  •   Can  the  disease  be  treated  by  lifestyle  interventions?  •   Are  combination  therapies  most  effective?    •   Do  these  treatments  cure  the  disease,  or  just  treat  the  symptoms?  • Post-­‐treatment  management:  •   How  is  the  disease  managed  following  diagnosis?    •   Are  treatments  required  on  a  one-­‐time  basis  or  are  they  continual?      •   Can  the  disease  be  cured,  or  just  managed?  •   Are  continued  lifestyle  changes  required  following  diagnosis?  • NB:  you  may  choose  to  highlight  all  the  possible  treatment  strategies  on  one  slide  while  

expanding  on  the  most  common  treatment  strategy  on  another  slide.    

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Planning Template for BIOL 1080 Disease PowerPoint Presentation Use this template to organize your presentation ideas with your group. Slide 1 Disease Title Page Include -course code -seminar section & TA’s name -date -names of group members

Slide 3 Anatomy • __________

__ • __________

__ • __________

__ • __________

__ • __________

__

Slide 6 Individual • __________

__ • __________

__ • __________

__ • __________

__ • __________

__

Slide 9 Risk Factors • __________

__ • __________

__ • __________

__ • __________

__ • __________

__

Slide 12 Diagnosis • __________

__ • __________

__ • __________

__ • __________

__ • __________

__

Slide 15 Physician Prescribed treatments • ____________ • ____________ • ____________ • ____________ • ____________

Slide 2 Outline -to organize the presentation

Slide 4 Physiology • __________

__ • __________

__ • __________

__ • __________

__ •

Slide 7 Familial • __________

__ • __________

__ • __________

__ • __________

__ •

Slide 10 Causes • __________

__ • __________

__ • __________

__ • __________

__ •

Slide 13 Clinical Classification • __________

__ • __________

__ • __________

__ • __________

__ •

Slide 16 Complementary Alternative Treatment • ____________ • ____________ • ____________ • ____________ •

Slide 18 Conclusion Any questions? And Thank the audience for listening

Slide 5 Pathology • __________

__ • __________

__ • __________

__ • __________

__

Slide 8 Societal • __________

__ • __________

__ • __________

__ • __________

__

Slide 11 Prevention • __________

__ • __________

__ • __________

__ • __________

__

Slide 14 Sub-Clinical Classification • __________

__ • __________

__ • __________

__

Slide 17 Post Treatment Mgmt • ____________ • ____________ • ____________ • ____________

Where possible, let a picture, figure, chart or other graphic tell the story rather than using text.

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Organizing  information  

Now  that  I  have  all  this  research  done,  how  do  I  organize  it?  How  to  compile,  organize,  and  create  flow  

with  your  information.    

A. Compile  your  information  

Step  1:    Paraphrase/  brief  summary  -­From  your  compiled  information,  write  a  brief  summary  of  the  major  points  from  the  information  collected  on  your  assigned  area  of  your  group’s  disease.  

B.    Create  an  Outline  

To  ensure  your  thoughts  are  complete  and  in  a  logical  order,  you  must  organize  your  thoughts  by  creating  an  outline.  You  will  notice  that  your  final  writing  and  presentation  goes  much  more  smoothly  when  you  do  this!    Step  1:  Road  map  

What  must  you  cover?  What  are  the    key  message  you  want  your  audience  to  take  away  from  your  presentation?  As  an  individual?    As  a  Group?  -­‐Develop  a  bullet-­‐pointed  outline  of  what  you  want  to  cover  and  the  approximate  order  from  step  1.    Don't  go  into  a  lot  of  detail  here...this  is  just  your  road  map.    Make  notes  on  areas  that  you  still  need  to  research  a  bit  more  to  FULLY  UNDERSTAND  or  on  which  you  need  to  find  additional  resources.      

Step  2:  Condense  Part  A    -­‐Take  your  brief  summary  and  condense  it  into  phrases  or  short  sentences  under  each  section  created  in  your  road  map.    Always  remember  to  create  a  segue  (flow  of  thought)  for  your  next  phrase/sentence.    Make  sure  that  sections  are  given  approximately  equal  attention.    

Step  3:    Flow  Does  your  information  flow  logically  and  smoothly?  -­‐Once  you've  completed  the  outline,  it  should  give  you  a  good  sense  of  whether  or  not  your  presentation  flows  logically  and  covers  the  key  aspects  of  your  topic.  If  flow  is  hampered,  return  to  Step  2  and  correct.    

Step  4:    Proof  read    -­‐  Re-­‐read  your  sections,  phrases/short  sentences  to  ensure  the  most  important  information  is  being  logically  conveyed  and  that  a  sense  of  flow  is  present.        

*Please  note  that  this  outline  will  assist  you  in  preparing  your  oral  presentation  but  may  need  to  be  condensed  further  for  your  PowerPoint  slides.  

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Power  Point  Presentation  Tips  

 Presentation  Design  • Plan  the  layout  of  your  presentation  as  a  whole  group  (see  template  below)  • Use  an  Outline  or  Table  of  Contents  slide  to  organize  the  presentation  • Don’t  overload  your  slides  with  too  much  text  or  data  • FOCUS.  In  general,  using  a  few  powerful  slides  is  the  aim  • Where  possible,  let  a  picture,  figure,  or  chart  tell  the  story  rather  than  using  text  • Include  an  appropriate  title  for  all  slides  • Proof  read  everything,  including  visuals  and  numbers  • Keep  “like”  topics  together  • Strive  for  similar  line  lengths  for  text    Background  Design  &  Colour  • Backgrounds  should  never  distract  from  the  presentation.  • Backgrounds  that  are  light  coloured  with  dark  text,  or  vice  versa,  look  good.  A  dark  

background  with  white  font  reduces  glare.  • Colors  appear  lighter  when  projected.  Pale  colors  often  appear  as  white.  • Consistent  backgrounds  add  to  a  professional  appearance.    Text    • Font  size  must  be  large  enough  to  be  easily  read.  

o Headings  =  minimum  36  point,  text  =  minimum  18  point,  references  =  12-­‐14  point  • Font  style  must  be  easy  to  read.    Avoid  all  capitals.  Use  no  more  than  2  similar  fonts.  • Overuse  of  text  is  a  common  mistake.    

o No  more  than  6  words/line  and  5  lines/slide      o If  possible,  make  your  point  with  graphics  instead  of  text  

 Visual  Elements  • Use  clear,  simple  visuals.  Don’t  confuse  the  audience.  • Use  contrast  of  text  and  background  (light  on  dark  or  dark  on  light)  • Graphics  should  make  a  key  concept  more  clear    • Place  your  graphics  in  a  similar  location  within  each  screen  if  possible    Charts  &  Figures  • Charts  and  graphs  must  be  clearly  labelled.  • Ensure  that  the  text  within  a  chart  is  large  enough  to  read  easily,  or  highlight  key    sections  to  

focus  the  audience’s  attention  • Cite  your  source  on  the  same  slide  as  the  chart,  figure,  graphic.  

 Excitement  • Animation  and  sound  effects  can  be  interesting  when  used  in  moderation,  but  too  much  

animation  is  distracting.  

 

 

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Oral  Communication  Tips    

Hints  for  Efficient  Practice  

Content    

• Make  a  list  of  key  words/concepts  for  each  slide  • Read  through  the  list  before  you  begin  • Don't  attempt  to  memorize  your  text;  your  words  will  probably  be  different  each  time  you  

practice  • Think  about  the  ideas,  and  your  words  will  follow  naturally    

Timing      

• To  end  on  time,  you  must  PRACTICE!  • Talk  through  your  presentation  to  see  how  much  time  you  use  for  each  slide    • Are  you  using  the  right  amount  of  time  per  slide?  Decide  which  slides  or  comments  need  

alteration  to  make  your  presentation  smoother  • When  practicing,  try  to  end  early.  You  need  to  allow  time  for  audience  interruptions  and  

questions.    

Hints  for  the  Presentation  

Pre-­Talk  Preparation  

• Plan  to  get  there  a  few  minutes  early  to  set  up  and  test  the  equipment    • Dress  appropriately  for  your  audience  • Turn  off  your  cell  phone  

Speaking  

• Talk  at  a  natural,  moderate  rate  of  speech    • Project  your  voice  • Speak  clearly  and  distinctly  • Repeat  critical  information  • Pause  briefly  to  give  your  audience  time  to  digest  the  information  on  each  new  slide    • Don’t  read  the  slides  aloud;  your  audience  can  read  them  far  faster  than  you  can  talk  

Body  Language  

• Keep  your  eyes  on  the  audience  • Use  natural  gestures  • Don’t  turn  your  back  to  the  audience  • Avoid  looking  at  your  notes.  Only  use  them  as  reference  points  to  keep  you  on  track.  Talk,  

don’t  read  Questions  

• Always  leave  time  for  a  few  questions  at  the  end  of  the  talk  • If  you  allow  questions  during  the  talk,  the  presentation  time  will  be  about  25%  more  than  

the  practice  time  

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• Relax.  If  you’ve  done  the  research  you  can  easily  answer  most  questions    • If  you  can’t  answer  a  question,  say  so.  Don’t  apologize.    “I  don’t  have  that  information.  I’ll  

try  to  find  out  for  you.”  Demeanor  

• Show  some  enthusiasm.  Nobody  wants  to  listen  to  a  dull  presentation.    On  the  other  hand,  don’t  overdo  it.  Nobody  talks  and  gestures  like  a  maniac  in  real  life  

• Involve  your  audience.  Ask  questions,  make  eye  contact,  use  humor.    • Don’t  get  distracted  by  audience  noises  or  movements  • You’ll  forget  a  minor  point  or  two.  Everybody  does.    • If  you  temporarily  lose  your  train  of  thought  you  can  gain  time  to  recover  by  asking  if  the  

audience  has  any  questions    Conclusion  

• Concisely  summarize  your  key  concepts  and  the  main  ideas  of  your  presentation    • Resist  the  temptation  to  add  a  few  last  impromptu  words    • End  your  talk  with  the  summary  statement  or  question  you  have  prepared.  What  do  you  

want  them  to  remember?