Current progress of Mexico in the iBOL project
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Transcript of Current progress of Mexico in the iBOL project
Current progress Current progress of Mexico in the of Mexico in the
iBOL project iBOL project
MexicoMexico, with a surface only two million km2 , with a surface only two million km2 and 10,000 km of littoral zone, occupies the and 10,000 km of littoral zone, occupies the
fourth place in biodiversityfourth place in biodiversity of the world* of the world*
*Source: Capital Natural De México, Vol I: Conocimiento Actual De La Biodiversidad. México, pp 33-65. Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO), México.
2nd Place with 804 spp. (8240)
2nd place with 449 spp. (4170)
4th place with 361spp. (4780)
12th place 1,150 spp. (9,198)
2200 marine and 500 freshwater fishesHere we found 7.37% of marine fishes of the word
1st place 669 spp. (1400) 518 are endemics
1st place 55 spp. (110 ) 47 are endemics
Currently Mexico has been developing several strategies for the advance of the barcoding projects and researchers involved:
Support to the Mexican Barcode of Life (MEXBOL)
Promote barcoding as a powerful tool for taxonomists
Developing strategies to lower costs and preparation of a portfolio of projects to submit to different funding agencies
Involvement in other initiatives
Support and advice for results publishing
AdvanceAdvance
Support to MEXBOL Support to MEXBOL MEXBOL MEXBOL network is one of 20 thematic networks network is one of 20 thematic networks supportedsupported
by the Mexican Council of Science and Technology by the Mexican Council of Science and Technology ((CONACYTCONACYT, see h, see httpttp://://www.conacyt.gob.mxwww.conacyt.gob.mx//RedesTematicasRedesTematicas/Paginas//Paginas/default.aspxdefault.aspx).).
After an open call this year, we submitted two proposals to After an open call this year, we submitted two proposals to CONACYT for direct support of the MEXBOL network. In total CONACYT for direct support of the MEXBOL network. In total were approved MXN 3,315,250.00 (near 255,000.00 dlls).were approved MXN 3,315,250.00 (near 255,000.00 dlls).
From the total $94,000 dlls will be used for equipment.From the total $94,000 dlls will be used for equipment.
$90,000 dlls must be used for a general meeting of the $90,000 dlls must be used for a general meeting of the MEXBOL network, perdiem, and maintenance of the WEB MEXBOL network, perdiem, and maintenance of the WEB serviceservice
Remaining money will be used in consumables and Remaining money will be used in consumables and reagentsreagents
The budget for equipment and consumables The budget for equipment and consumables will be used to support the National Lab for the will be used to support the National Lab for the Barcoding, currently with three nodes of high Barcoding, currently with three nodes of high volume PCR and servicing all members of the volume PCR and servicing all members of the network network (50,000 reactions/year).(50,000 reactions/year).
Instituto de Biología
ECOSUR ChetumalCIBNOR La Paz
Development of the Development of the National LabNational Lab
Apart of the support from Apart of the support from CONACYT, each institution involved CONACYT, each institution involved in the nodes gave additional funds.in the nodes gave additional funds.
IBUNAM gained, through a joint IBUNAM gained, through a joint project with other two institutes, a project with other two institutes, a high throughput sequencing facility, high throughput sequencing facility, with a capillary and a 2nd with a capillary and a 2nd generation sequencers.generation sequencers.
NATIONAL COUNCIL FOR NATIONAL COUNCIL FOR BIODIVERSITY (CONABIO) BIODIVERSITY (CONABIO)
SUPPORTSUPPORT
A server with hardware and software to A server with hardware and software to support a National Mirror of the BOLD support a National Mirror of the BOLD database and the MEXBOL pagedatabase and the MEXBOL page
Income for a technician (Arturo Income for a technician (Arturo Domínguez García) in charge to develop Domínguez García) in charge to develop the software of the MEXBOL page (~1.5 the software of the MEXBOL page (~1.5 yrs. with a possible extension of time)yrs. with a possible extension of time)
MEXBOL web page
Currently 95 formal members+ ~30 not formally included
UNDER CONSTRUCTION!
Advances in barcodingAdvances in barcoding
Currently, Mexico is among the top ten nations on barcode production with the following groups:
Animals PlantsAcanthocephala (3rd) Magnoliophyta (8th)Annelida (5th) Pinophyta (2nd)Arthropoda (7th)Chordata (3rd) FungiCnidaria (5th) Ascomycota (2nd)Echinodermata (6th)| Basidiomycota (2nd)Nematoda (2nd) Zygomicota (2nd)Platyhelminthes (4th) Chlorarachniophyta (2nd)Rotifera (1st)
Data from the BOLD taxonomy browser (June 20, 2013)
Related Projects Related Projects A submission for equipment in ECOSUR (~300,000 dlls)A submission for equipment in ECOSUR (~300,000 dlls)
14 projects financed by CONABIO are underway or finished14 projects financed by CONABIO are underway or finished
13 projects financed by other sources are underway or 13 projects financed by other sources are underway or finishedfinished
7 new projects submitted by different colleagues involving 7 new projects submitted by different colleagues involving barcodesbarcodes
About 100 students involved in different projects with their About 100 students involved in different projects with their own Thesis or research studiesown Thesis or research studies
Google: In conjunction with the CBOL, to work in the project Google: In conjunction with the CBOL, to work in the project Barcode Wildlife Project to barcode CITES protected species Barcode Wildlife Project to barcode CITES protected species (see h(see https://plus.google.com/107778383819228315340/posts?ttps://plus.google.com/107778383819228315340/posts?hl=es)hl=es)
Academic progressAcademic progress A special volume on Mexican Barcoding A special volume on Mexican Barcoding
(Molecular Ecology Resources) is in progress(Molecular Ecology Resources) is in progress
Preparation of the State of Art on DNA barcoding Preparation of the State of Art on DNA barcoding in Mexicoin Mexico
+63 papers already published by Mexican +63 papers already published by Mexican authors*authors*
An increasing knowledge of biodiversity in this An increasing knowledge of biodiversity in this region of the worldregion of the world
TimelineTimeline
00 11 22 33 44
•Initial funds•Start of National Lab•First results•Start with LIMS
Year
•Consolidate National Lab
•20K sequences
•Start support to collections
•Start mirror facility and LIMS work
•20K sequences•Lab capability fully installed•Supported collections•Crio-preservation associated to collections
•Capacity for 20K or more specimens*•Application of barcodes•Continue support to collections•Consolidation of participation in different iBOL themes
•Most material in collections sequenced•Continue in application•Global review of goals to establish new ones
-2
Negotiation and preparation of the project to CONACYT and CONABIO
Challenges or threatsChallenges or threats Funds have been shortened, intermitent, Funds have been shortened, intermitent,
delayed, and support policies are continuosly delayed, and support policies are continuosly changing in Mexicochanging in Mexico
High pressure from CONACYT to develop only High pressure from CONACYT to develop only applied projectsapplied projects
Reluctance to DNA barcoding by many well Reluctance to DNA barcoding by many well trained taxonomiststrained taxonomists
In general (and for good reasons) Mexicans are quite In general (and for good reasons) Mexicans are quite concerned about their data, they are demanding for a concerned about their data, they are demanding for a BOLD mirror, and the release policy of the iBOL is not BOLD mirror, and the release policy of the iBOL is not welcome for many of them, mainly taxonomistswelcome for many of them, mainly taxonomists..
Thanks!