Cryo-EM Dictionary Proposal--March 2005

This is a proposed dictionary of data items describing cryo-EM experiment and structure that has been developed as a collaboration between the Computational Center for Biomolecular Complexes (C2BC) and the RCSB Protein Data Bank (RCSB-PDB).History:

Oct. 2004: At the Cryo-Electron Microscopy Structure Deposition Workshop held at the Protein Data Bank in Piscataway, NJ, the current cryo-EM CIF dictionary, mmcif_iims dictionary v.002 (4/2004), was reviewed. Recommendations of experts in the cryo-EM field for desired definitions were obtained.

Dec. 2004: In response to these recommendations, a revised dictionary was prepared: mmcif_iims dictionary v.005 (12/2004). The revisions were originally encoded by Kim Henrick and subsequently revised by John Westbrook and Matthew Baker.

Feb 2005: The v.005 dictionary was carefully reviewed by Cathy Lawson and Matt Baker, and additional changes were recommended.

This powerpoint presentation summarizes the resulting dictionary proposal. All changes from the v.002 (4/2004) dictionary are highlighted according to the key presented on the following page.

em_sample_preparation

_em_sample_preparation.support_id

_em_sample_preparation.solution_id (V002: em_sample_preparation.buffer_id)

_em_sample_preparation.details

KEY

Existing categoryExisting data itemRenamed data item (version: old name)New data item

em_solution_composition(V002: em_buffer)

_em_solution_composition.id

_em_solution_composition.name

Renamed category(all data items under category header are also renamed)

em_single_particle

_em_single_particle.id

_em_single_particle.point_group_symmetry

New category(all data items under category header are also new)

Changes relative to mmcif_iims cryo-EM dictionary version 002, 4/2004 are indicated as follows:

Most data items are hyperlinked to their web page definitions

Overview

EMExperimental

Computational

Biochemical Sample Preparation

em_sample_support

em_sample_preparation

em_solution_composition

em_array_formation

SampleDescription

em_assembly

em_entity_assembly

em_entity_assembly_list

em_icos_virus_shells

em_virus_entity

em_entry

em_filaments

em_single_particle

EM SpecimenPreparation

em_vitrification

em_stain

em_cryo_stain

em_embedding_agent

EM Data Collection

em_microscope

em_imaging

em_detector

em_electron_diffraction

em_image_scans

em_micrographs

em_electron_diffraction_phase

em_electron_diffraction_patternImage Processing

em_3d_reconstruction

em_particle_picking

em_singleparticle_selection

em_particle_picking_list

Structure Analysis

em_3d_fitting

em_3d_fitting_list

em_classes

em_refinement

em_fsc_curve

Map Description

em_filament_selection

em_filament_reconstruction

em_2d_crystal

Sample Description overallEM

em_assembly

_em_assembly.id

_em_assembly.entry_id

_em_assembly.name

_em_assembly.aggregation_state

_em_assembly.details

_em_assembly.num_components

em_entity_assembly

_em_entity_assembly.id

_em_entity_assembly.assembly_id

_em_entity_assembly.type

_em_entity_assembly.name

_em_entity_assembly.details

_em_entity_assembly.ebi_organism_scientific

_em_entity_assembly.ebi_organism_common

_em_entity_assembly.ebi_strain

_em_entity_assembly.ebi_tissue

_em_entity_assembly.ebi_cell

_em_entity_assembly.ebi_organelle

_em_entity_assembly.ebi_cellular_location

_em_entity_assembly.ebi_engineered

_em_entity_assembly.ebi_expression_system

_em_entity_assembly.ebi_expression_system_plasmid

_em_entity_assembly.go_id

_em_entity_assembly.ipr_id

_em_entity_assembly.synonym

em_entity_assembly_list

_em_entity_assembly_list.id

_em_entity_assembly_list.entity_id

_em_entity_assembly_list.entity_assembly_id

_em_entity_assembly_list.details (v002: em_entity_assembly_list.oligomeric details)

_em_entity_assembly_list.number_of_copies

_em_entity_assembly_list.mol_wt(v005: em_entity_assembly_list.mol_wt_exp)(v005: em_entity_assembly_list.mol_wt_theo)

_em_entity_assembly_list.mol_wt_method

EM

em_entry

_em_entry.id

SampleDescription

em_assembly

em_entity_assembly

em_entity_assembly_list

em_icos_virus_shells

em_virus_entity

em_entry

em_filaments

em_single_particle

em_2d_crystal

Sample Description typesEM

em_virus_entity

_em_virus_entity.id

_em_virus_entity.virus_host_category

_em_virus_entity.virus_host_species

_em_virus_entity.virus_host_growth_cell

_em_virus_entity.virus_type

_em_virus_entity.virus_isolate

_em_virus_entity.ictvdb_id

_em_virus_entity.entity_assembly_id

_em_virus_entity.enveloped

_em_virus_entity.empty

em_icos_virus_shells

_em_icos_virus_shells.virus_entity_id

_em_icos_virus_shells.id

_em_icos_virus_shells.shell_diameter

_em_icos_virus_shells.triangulation_num

em_single_particle

_em_single_particle.id

_em_single_particle.entry_id

_em_single_particle.point_group_symmetry

_em_single_particle.details

_em_single_particle.local_symmetry_detail

em_filament

_em_filaments.id

_em_filaments.entry_id

_em_filaments.details

_em_filaments.delta_phi

_em_filaments.delta_z

_em_filaments.dyad

_em_filaments.axial_symmetry

_em_filaments.helical_family

_em_filaments.helical_pitch

_em_filaments.subunits_helix_turn

_em_filaments.axial_rise_subunit

SampleDescription

em_assembly

em_entity_assembly

em_entity_assembly_list

em_icos_virus_shells

em_virus_entity

em_entry

em_filaments

em_single_particle

em_2d_crystal

em_2d_crystal(not yet encoded in CIF dictionary)

em_2D_crystal.id                          

em_2D_crystal.entry_id 

em_2D_crystal.space_group_name_H-M

em_2D_crystal.space_group_number

em_2D_crystal.cell_setting 

em_2D_crystal.plane

em_2D_crystal.thickness 

em_2D_crystal.cell_length_a  

em_2D_crystal.cell_length_b  

em_2D_crystal.cell_length_c

em_2D_crystal.cell_angle_alpha

em_2D_crystal.cell_angle_beta 

em_2D_crystal.cell_angle_gamma 

em_2D_crystal.details

em_2D_crystal.local_symmetry_details

Biochemical Sample Preparation

EM

em_sample_support

_em_sample_support.id

_em_sample_support.film_material

_em_sample_support.method

_em_sample_support.grid_material

_em_sample_support.grid_mesh_size

_em_sample_support.grid_type

_em_sample_support.pretreatment

_em_sample_support.details

_em_sample_support.citation_id

em_solution_composition(v002: em_buffer +em_buffer_components)

_em_solution_composition.id

_em_solution_composition.name

_em_solution_composition.pH

_em_solution_composition.details(v002: em_buffer_components.details)

em_sample_preparation

_em_sample_preparation.pdb_entry_id

_em_sample_preparation.entry_id

_em_sample_preparation.id

_em_sample_preparation.details

_em_sample_preparation.ph

_em_sample_preparation.solution_id (v002: em_sample_preparation.buffer_id)

_em_sample_preparation.sample_concentration

_em_sample_preparation.array_formation_id (v002: em_sample_preparation.2d_crystal_grow_id)

_em_sample_preparation.support_id

em_array_formation(v002: em_2d_crystal_grow)

_em_array_formation.id

_em_array_formation.type

_em_array_formation.method

_em_array_formation.apparatus

_em_array_formation.atmosphere

_em_array_formation.pH

_em_array_formation.temp

_em_array_formation.time

_em_array_formation.solution_id (v002: em_2d_crystal_grow.buffer_id)

_em_array_formation.details

_em_array_formation.citation_id

_em_array_formation.buffer_id

Biochemical Sample Preparation

em_sample_support

em_sample_preparation

em_solution_composition

em_array_formation

EM Specimen PreparationEM

em_vitrification

_em_vitrification.entry_id

_em_vitrification.id

_em_vitrification.sample_preparation_id

_em_vitrification.cryogen_name

_em_vitrification.humidity

_em_vitrification.temp

_em_vitrification.instrument

_em_vitrification.protocol (V002: em_vitrification.method)

_em_vitrification.time_resolved_state

_em_vitrification.citation_id

_em_vitrification.details

EM SpecimenPreparation

em_vitrification

em_stain

em_cryo_stain

em_embedding_agent

em_stain

_em_stain.id

_em_stain.entry_id

_em_stain.details

_em_stain.citation

_em_stain.protocol

_em_stain.time_resolved_state

_em_stain.temperature

_em_stain.humidity

_em_stain.type

_em_stain.instrument

_em_stain.sample_preparation_id

em_cryo_stain

_em_cryo_stain.id

_em_cryo_stain.entry_id

_em_cryo_stain.cryo_flag

_em_cryo_stain.details

_em_cryo_stain.citation

_em_cryo_stain.protocol

_em_cryo_stain.time_resolved_state

_em_cryo_stain.cryogen_name

_em_cryo_stain.temperature

_em_cryo_stain.humidity

_em_cryo_stain.type

_em_cryo_stain.instrument

_em_cryo_stain.sample_preparation_id

em_embedding_agent

_em_embedding_agent.id

_em_embedding_agent.entry_id

_em_embedding_agent.type

_em_embedding_agent.details

_em_embedding_agent.citation

_em_embedding_agent.temperature

_em_embedding_agent.time_resolved

EM Data Collection imagescans, micrographs

EM

EM Data Collection

em_microscope

em_imaging

em_detector

em_electron_diffraction

em_image_scans

em_micrographs

em_electron_diffraction_phase

em_electron_diffraction_pattern

em_image_scans

_em_image_scans.entry_id

_em_image_scans.id

_em_image_scans.details

_em_image_scans.scanner_model

_em_image_scans.step_size (V002: em_image_scans.sampling_size)

_em_image_scans.od_range

_em_image_scans.bits_per_pixel (V002: em_image_scans.quant_bit_size)

_em_image_scans.citation_id

_em_image_scans.spot_size

em_micrographs

_em_micrographs.image_id

_em_micrographs.entry_id

_em_micrographs.microscope_id

_em_micrographs.specimen_id

_em_micrographs.astigmatism_flag

_em_micrographs.circular_averaging_flag

_em_micrographs.image_filter

_em_micrographs.edge_threshold

_em_micrographs.power_factor

_em_micrographs.averaging_overlap

_em_micrographs.field_size

_em_micrographs.nominal_defocus

_em_micrographs.refined_defocus_estimate

_em_micrographs.amplitude_contrast

_em_micrographs.astigmatism_ratio

_em_micrographs.correction_type

_em_micrographs.experiment_mode

_em_particle_picking.micrograph_id

_em_particle_picking_list.micrograph_id

EM Data Collection apparatus EM

em_detector

_em_detector.entry_id

_em_detector.pdb_entry_id

_em_detector.id

_em_detector.details

_em_detector.type

_em_detector.pixel_size

_em_detector.film_processing_conditions

_em_detector.exposure_time

_em_detector.exposure_type

_em_detector.binning_x

_em_detector.binning_y

_em_detector.offset_x

_em_detector.offset_y

_em_detector.dimension_x

_em_detector.dimension_y

_em_detector.speed

EM Data Collection

em_microscope

em_imaging

em_detector

em_electron_diffraction

em_image_scans

em_micrographs

em_electron_diffraction_phase

em_electron_diffraction_pattern

em_imaging

_em_imaging.entry_id

_em_imaging.pdb_entry_id

_em_imaging.id

_em_imaging.sample_support_id

_em_imaging.detector_id

_em_imaging.scans_id

_em_imaging.microscope_id

_em_imaging.specimen_holder_model

_em_imaging.details

_em_imaging.accelerating_voltage

_em_imaging.illumination_mode

_em_imaging.mode

_em_imaging.nominal_cs

_em_imaging.nominal_defocus_min

_em_imaging.nominal_defocus_max

_em_imaging.tilt_angle_min

_em_imaging.tilt_angle_max

_em_imaging.nominal_magnification

_em_imaging.calibrated_magnification

_em_imaging.electron_source

_em_imaging.electron_dose

_em_imaging.electron_dose_range

_em_imaging.energy_filter

_em_imaging.energy_window

_em_imaging.citation_id

_em_imaging.temperature

_em_imaging.diffraction_camera_length (V002: em_imaging.detector_distance)

_em_imaging.condenser_aperture

_em_imaging.spot_size

_em_imaging.objective_aperture

_em_imaging.selective_aperture

_em_imaging.imaging_cryogen

em_microscope

_em_microscope.id

_em_microscope.model(V002: em_imaging.microscope_model)

EM Data Collection electron diffraction

EM

EM Data Collection

em_microscope

em_imaging

em_detector

em_electron_diffraction

em_image_scans

em_micrographs

em_electron_diffraction_phase

em_electron_diffraction_pattern

em_electron_diffraction

_em_electron_diffraction.entry_id

_em_electron_diffraction.id

_em_electron_diffraction.num_structure_factors

_em_electron_diffraction.num_diff_patterns

_em_electron_diffraction.details

em_electron_diffraction_phase

_em_electron_diffraction_phase.entry_id

_em_electron_diffraction_phase.id

_em_electron_diffraction_phase.d_res_high

_em_electron_diffraction_phase.residual

_em_electron_diffraction_phase.highest_resolution_shell_error

_em_electron_diffraction_phase.overall_error

_em_electron_diffraction_phase.rejection_criteria_error

em_electron_diffraction_pattern

_em_electron_diffraction_pattern.entry_id

_em_electron_diffraction_pattern.id

_em_electron_diffraction_pattern.num_patterns_by_tilt_angle

_em_electron_diffraction_pattern.num_images_by_tilt_angle

_em_electron_diffraction_pattern.tilt_angle

Image Processing selection, reconstruction

em_singleparticle_selection(v002: em_2d_projection_selection)

(v005:em_2d_singleparticle_selection)

_em_singleparticle_selection.entry_id

_em_single_particle_selection.num_micrographs (V005: em_single_particles.num_micrographs)

_em_singleparticle_selection.num_particles

_em_singleparticle_selection.protocol (V002: em_2d_projection_selection.software_name)

_em_singleparticle_selection.citation_id

em_3d_reconstruction

_em_3d_reconstruction.entry_id

_em_3d_reconstruction.id

_em_3d_reconstruction.num_particles

_em_3d_reconstruction.num_asymmetric_units (V005: em_2d_singleparticles.num_asymmetric_units)

_em_3d_reconstruction.method_details (V002: em_3d_reconstruction.method)

_em_3d_reconstruction.citation_id

_em_3d_reconstruction.resolution

_em_3d_reconstruction.resolution_method_details (V002: em_3d_reconstruction.resolution_method)

_em_3d_reconstruction.amplitude_correction_details

_em_3d_reconstruction.ctf_correction_method_details (V002: em_3d_reconstruction.ctf_correction_method)

_em_3d_reconstruction.voxel_size_x

_em_3d_reconstruction.voxel_size_y

_em_3d_reconstruction.voxel_size_z

EM

Image Processing

em_3d_reconstruction

em_particle_picking

em_singleparticle_selection

em_particle_picking_list

em_filaments_selection

em_filaments_reconstruction

We are proposing to remove “2d” from this categoryname to prevent confusion with 2d crystals

Image Processing particle picking

em_particle_picking

_em_particle_picking.entry_id

_em_particle_picking.pre_processing_filters_details

_em_particle_picking.citation

_em_particle_picking.correlation_threshold

_em_particle_picking.local_maxima_radius

_em_particle_picking.grow_threshold

_em_particle_picking.min_radius

_em_particle_picking.max_radius

em_particle_picking_list

_em_particle_picking_list.id

_em_particle_picking_list.class_id

_em_particle_list.used_in_map_flag

_em_particle_list.pixel_x_origin

_em_particle_list.pixel_y_origin

_em_particle_list.radius

_em_particle_list.alignment_shift_x

_em_particle_list.alignment_shift_y

_em_particle_list.alignment_rotation_phi

_em_particle_list.correlation_flag

_em_particle_list.noise_image_flag

_em_particle_list.particle_template_flag

_em_particle_list.symmetric_mask_flag

_em_particle_list.3d_volume

_em_particle_list.interpolation_factor

_em_particle_list.peak_separation_distance

_em_particle_list.phi

_em_particle_list.theta

_em_particle_list.psi

EM

Image Processing

em_3d_reconstruction

em_particle_picking

em_singleparticle_selection

em_particle_picking_list

em_filaments_selection

em_filaments_reconstruction

_em_particle_picking.details

_em_particle_picking.method

_em_particle_picking.centering_method

_em_particle_picking_list.entry_id

Image Processing filamentsem_filaments_selection(v005: em_filaments)

_em_filaments_selection.num_unit_cells

_em_filaments_selection.num_filaments_used

_em_filaments_selection.box_criteria

_em_filaments_selection.straightening_details

_em_filaments_selection.selection_rule

em_filaments_reconstruction(v005: em_filaments)

_em_filaments_reconstruction.correction_details

_em_filaments_reconstruction.layer_line_details

_em_filaments_reconstruction.average_phase_residual

_em_filaments reconstruction.map_symmetry_id

_em_filaments_reconstruction.number_datasets

_em_filaments_reconstruction.diameter_tubes

_em_filaments_reconstruction.layerline_resolution

_em_filaments_reconstruction.number_layerlines

_em_filaments_reconstruction.number_sample_points_layerline

EM

Image Processing

em_3d_reconstruction

em_particle_picking

em_singleparticle_selection

em_particle_picking_list

em_filaments_selection

em_filaments_reconstruction

Structure Analysis fitting EM

Structure Analysis

em_3d_fitting

em_3d_fitting_list

em_classes

em_refinement

em_fsc_curve

em_3d_fitting

_em_3d_fitting.id

_em_3d_fitting.entry_id

_em_3d_fitting.method

_em_3d_fitting.target_criteria

_em_3d_fitting.quality_index

_em_3d_fitting.local_variance

_em_3d_fitting.quality_details

_em_3d_fitting.details

_em_3d_fitting.overall_b_value

_em_3d_fitting.ref_space

_em_3d_fitting.ref_protocol

em_3d_fitting_list

_em_3d_fitting_list.3d_fitting_id

_em_3d_fitting_list.id

_em_3d_fitting_list.pdb_entry_id

_em_3d_fitting_list.pdb_chain_id

_em_3d_fitting_list.model_details

_em_3d_fitting_list.fitted_pdb_entry_id

_em_3d_fitting_list.entry_id

_em_3d_fitting_list.fitted_pdb_chain_id

_em_3d_fitting_list.start_seq

_em_3d_fitting_list.end_seq

_em_3d_fitting_list.start_pdb_symm_as_xyz

_em_3d_fitting_list.transform_matrix[1][1]

_em_3d_fitting_list.transform_matrix[1][2]

_em_3d_fitting_list.transform_matrix[1][3]

_em_3d_fitting_list.transform_matrix[1][4]

_em_3d_fitting_list.transform_matrix[2][1]

_em_3d_fitting_list.transform_matrix[2][2]

_em_3d_fitting_list.transform_matrix[2][3]

_em_3d_fitting_list.transform_matrix[2][4]

_em_3d_fitting_list.transform_matrix[3][1]

_em_3d_fitting_list.transform_matrix[3][2]

_em_3d_fitting_list.transform_matrix[3][3]

_em_3d_fitting_list.transform_matrix[3][4]

_em_3d_fitting_list.transform_matrix[4][1]

_em_3d_fitting_list.transform_matrix[4][2]

_em_3d_fitting_list.transform_matrix[4][3]

_em_3d_fitting_list.transform_matrix[4][4]

Structure Analysis refinement EM

Structure Analysis

em_3d_fitting

em_3d_fitting_list

em_classes

em_refinement

em_fsc_curve

em_classes

_em_classes.id

_em_classes.details

_em_classes.entry_id

_em_classes.origin_x

_em_classes.origin_y

_em_classes.euler_1

_em_classes.euler_2

_em_classes.euler_3

_em_classes.num_particles

_em_classes.angular_error_threshold

_em_classes.internal_resolution_flag

_em_classes.average_angular_error

_em_classes.average_translational_pixel_shift_error

_em_classes.fractional_minimum_amplitude

_em_classes.global_correlation_coefficient

_em_classes.global_real-space_correlation_coefficient

_em_classes.clustering_method

_em_classes.alignment_method

em_3d_refinement

_em_3d_refinement.id

_em_3d_refinement.entry_id

_em_3d_refinement.method_details

_em_3d_refinement.num_iterations

_em_3d_refinement.angular_search_step_size

_em_3d_refinement.max_spatial_frequency

_em_3d_refinement.structure_radius

_em_3d_refinement.projection_radius

_em_3d_refinement.alignment_radius

_em_3d_refinement.convergence_criterion

em_fsc_curve

_em_fsc_curve.curve_id

_em_fsc_curve.id

_em_fsc_curve.x

_em_fsc_curve.y

Map Description EM Map Description

em_map

_em_map.id

_em_map.3d_reconstruction_id

_em_map.imaging_id

_em_map.entry_id

_em_map.map_files_id

_em_map.num_columns

_em_map.num_rows

_em_map.num_sections

_em_map.spacing_x

_em_map.spacing_y

_em_map.spacing_z

_em_map.data_type

_em_map.pixel_x

_em_map.pixel_y

_em_map.pixel_z

_em_map.row_limit

_em_map.col_limit

_em_map.sec_limit

_em_map.plane_group

_em_map.origin_x

_em_map.origin_y

_em_map.origin_z

_em_map.value_density_min

_em_map.value_density_max

_em_map.value_density_mean

_em_map.details

_em_map.value_density_std

_em_map.2d_crystal_grow_id

_em_map.map_symmetry_id

_em_map.map_structure_factors_id

_em_map.cell_length_a

_em_map.cell_length_b

_em_map.cell_length_c

_em_map.cell_length_a_esd

_em_map.cell_length_b_esd

_em_map.cell_length_c_esd

_em_map.cell_angle_alpha

_em_map.cell_angle_beta

_em_map.cell_angle_gamma

_em_map.reflection_wavelength

_em_map.r_value_all_data

_em_map.r_free

_em_map.num_atoms

_em_map.num_observations

_em_map.num_unique_reflns

_em_map.percent_reflns_collected

_em_map.map_eigenvalues_id

_em_map.handedness_method

_em_map.phase_origin_method

_em_map.num_class_averages

_em_map.axisOrderFast

_em_map.axisOrderMedium

_em_map.axisOrderSlow

_em_map.spaceGroupNumber

_em_map.isosurface_countour_level

_em_map.author_threshold

_em_map.contrast_convention

_em_map.enforced_symmetry

_em_map.local_symmetry_details

_em_map.thickness

_em_map.release_date

_em_map_structure_factors.method

_em_map_structure_factors.details

_em_orthogonal_slices.id

_em_orthogonal_slices.map_id

Map Description EM Map Description

em_map_resolution

_em_map_resolution.entry_id

_em_map_resolution.title

_em_map_resolution.x_axis

_em_map_resolution.y_axis

_em_map_resolution.map_id

_em_map_resolution.curve_id

_em_map_resolution.cutoff_used

_em_map_resolution.sigma_weight

_em_map_resolution.fsc_criteria

_em_map_resolution.3d_reconstruction_resolution_method

_em_map_resolution.resolution_cut_off_criteria

_em_map_resolution.nyquist_frequency

_em_map_resolution.fsc_significance_threshold

_em_map_resolution.fsc_spatial_frequency

_em_map_resolution.spectral_value

_em_map_resolution.dpr_spatial_frequency

_em_map_resolution.dpr_value

_em_map_resolution.dpr_crit

_em_map_resolution.details

em_map_ctf_correction

_em_map_ctf_correction.id

_em_map_ctf_correction.map_id

_em_map_ctf_correction.method

_em_map_ctf_correction.details

em_map_structure_factors

_em_map_structure_factors.id

_em_map_structure_factors.map_id

_em_map_structure_factors.map_files_id

em_map_symmetry

_em_map_symmetry.id

_em_map_symmetry.map_id

_em_map_symmetry.plane_group_name_H-M

_em_map_symmetry.enforced_symmetry

_em_map_symmetry.equiv_pos_as_xyz

em_orthoganol_slices

_em_orthogonal_slices.x_slice_id

_em_orthogonal_slices.y_slice_id

_em_orthogonal_slices.z_slice_id

_em_orthogonal_slices.x_slice_number

_em_orthogonal_slices.y_slice_number

_em_orthogonal_slices.z_slice_number

em_map_figure

_em_map_figure.id

_em_map_figure.map_id

_em_map_figure.num_bytes

_em_map_figure.details

_em_map_figure.map_files_id

em_map_surface

_em_map_surface_rendering.id

_em_map_surface_rendering.map_id

_em_map_surface_rendering.method

_em_map_surface_rendering.threshold_volume_mol_wt

_em_map_surface_rendering.details

_em_map_surface_rendering.map_files_id

Map Description EM Map Description

em_map_files

_em_map_files.id

_em_map_files.map_id

_em_map_files.orthogonal_slices_x_slice_id

_em_map_files.orthogonal_slices_y_slice_id

_em_map_files.orthogonal_slices_z_slice_id

_em_map_files.details

em_map_eigenvalues

_em_map_eigenvalues.id

_em_map_eigenvalues.map_id

_em_map_eigenvalues.details

_em_map_eigenvalues.spectrum

_em_map_eigenvalues.min_value

_em_map_eigenvalues.max_value

em_tomography

_em_tomography.id

_em_tomography.entry_id

_em_tomography.tilt_angle_incr

_em_tomography.num_sections

_em_tomography.details

_em_tomography.StagePositionX

_em_tomography.StagePositionY

em_tomography_image

_em_tomography_image.id

_em_tomography_image.entry_id

_em_tomography_image.defocus

_em_tomography_image.electron_dose

_em_tomography_image.exposure_time

_em_tomography_image.magnification

_em_tomography_image.pixel_size

_em_tomography_image.shift_x

_em_tomography_image.shift_y

_em_tomography_image.tilt_angle