Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department...

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Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University
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Transcript of Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department...

Page 1: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Coping with Changing Controlled Vocabularies

James J. Cimino, M.D.

Paul D. Clayton, Ph.D.

Department of Medical Informatics

Columbia University

Page 2: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Changes in ICD9-CM

Additions

Deletions

Minor Name Changes

Major Name Changes

Refinements

Page 3: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Additions

070.44: CHRONIC HEPATITIS C WITH HEPATIC COMA

333.92: NEUROLEPTIC MALIGNANT SYNDROME

512.1: IATROGENIC PNEUMOTHORAX

677: LATE EFFECTS OF COMPLICATION OF PREGNANCY, CHILDBIRTH, THE PUERPERUM

759.83: FRAGILE X SYNDROME

Page 4: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

More Additions

789.6: ABDOMINAL TENDERNESS

V50.4: PROPHYLACTIC ORGAN REMOVAL

E869.4: ACCIDENTAL POISONING BY SECOND-HAND TOBACCO SMOKE

34.05: AUTOLOGOUS HEMATOPOETIC STEM CELL TRANSPLANT

Page 5: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Deletions

043.0: ACQUIRED IMMUNODEFICIENCY SYNDROME, UNSPECIFIED

305.13: TOBACCO USE DISORDER, IN REMISSION

Page 6: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Minor Name Changes

070.41:HEPATITIS C WITH HEPATIC COMAACUTE OR UNSPECIFIED HEPATITIS C WITH HEPATIC COMA

440.2: ATHEROSCLEROSIS OF ARTERIES OF THE EXTREMITIESATHEROSCLEROSIS OF NATIVE ARTERIES OR EXTREMITIES

770.1:MASSIVE ASPIRATION SYNDROME OF NEWBORNMECONIUM ASPIRATION SYNDROME

Page 7: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Major Name Changes

344.0:HEMIPLEGIAHEMIPLEGIA AND HEMIPARESIS

V45.0:POSTSURGICAL CARDIAC PACEMAKER IN SITUCARDIAC DEVICE IN SITU

Page 8: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Refinements

441.0: DISSECTING ANEURYSM (ANY PART)

441.0: DISSECTING AORTIC ANEURYSM

441.00: DISSECTING AORTIC ANEURYSM OF UNSPECIFIED SITE

441.01: DISSECTING THORACIC AORTIC ANEURYSM

441.02: DISSECTING ABDOMINAL AORTIC ANEURYSM

441.03: DISSECTING THORACOABDOMINAL AORTIC ANEURYSM

Page 9: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Code Change

Removed795.8: POSITIVE SEROLOGICAL OR VIRAL CULTURE

FINDING FOR HUMAN IMMUNODEFICIENCY VIRUS (HIV) ASSOCIATED VIRUS (HTLV-III/LAV)

Added795.71: NONSPECIFIC SEROLOGIC EVIDENCE OF

HUMAN IMMUNODEFICIENCY VIRUS (HIV)

Page 10: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Volatile Vocabulary/Persistent Data

99.71 MERCURY-ZINC PACEMAKER 99.71 THERAPEUTIC PLASMAPHERESIS

1980 1992

Patient Database

99.71

???

Page 11: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Historical Vocabulary

Store the code

Keep track of when the code changes

Look up the meaning of the code based on date it was used

Page 12: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Retrieval Using Historical Vocabulary

IF (Code=75.22 and Year<1990)

OR (Code=76.2 and Year=1991)

OR ((Code=76.20 or Code=76.21)

AND Year=1992)...

Page 13: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

CPMC Approach: Encode the Meaning

Each code corresponds with one meaning (concept)

Each concept may or may not have an ICD9 Code

If ICD9 term changes meaning, it is no longer associated with the concept

Page 14: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Deletion

Concept Code: 10101Concept Name: Tobacco Use Disorder, in RemissionICD9 Code: 305.13ICD9 Entry Code:Old ICD9 Code:

Concept Code: 10101Concept Name: Tobacco Use Disorder, in RemissionICD9 Code:ICD9 Entry Code: 305.1Old ICD9 Code: 305.13

Page 15: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Concept Code: 31313Concept Name: Massive Aspiration Syndrome of NewbornICD9 Code: 770.1ICD9 Entry Code:Old ICD9 Code:

Minor Name Change

Concept Code: 31313Concept Name: Meconium Aspiration SyndromeICD9 Code: 770.1ICD9 Entry Code:Old ICD9 Code:

Page 16: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Major Name Change

Code: 21212Name: Mercury-Zinc PacemakerICD9: 99.71Entry:Old:

Code: 21212Name: Mercury-Zinc PacemakerICD9:Entry: <none>Old: 99.71

Code: 44444Name: Therapeutic PlasmapheresisICD9: 99.71Entry:Old:

Page 17: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Volatile Vocabulary/Persistent Data

99.71 MERCURY-ZINC PACEMAKER

1980 1992

Patient Database

21212

MERCURY-ZINC PACEMAKER(Old Code 99.71)

Page 18: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Additional Situations

New redundancy

Discovering old redundancy

Ambiguity

Disambiguation

Obsolescence

Precoordination

Page 19: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Advantages of Concept-Based Approach

Database contains original meaning

Concept-oriented retrieval is easier

Page 20: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Conclusions

Vocabulary changes are inevitable

Store what the clinician means

Map the vocabulary to the meanings, not the reverse

Page 21: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Definitions

Users: attendings, nurses, residents, respiratory care technicians, dieticians, social workers, students

Knowledge: textbooks, bibliographic databases, guidelines (passive), algorithms (active)

Point of care: clinic, emergency room, in-patient floors, ICU’s, recovery rooms

Page 22: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Access to Information Sources

???

“Electronic Library”

Page 23: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Integrated Access to Information

???

Clinical Information System

Context

Con

cept

s

Data

Page 24: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

“Medline Button” Design

Application-specific questions (Mad Libs)

Coded clinical information to fill in the blanks

Medical Entities Dictionary of concepts

Translation using the UMLS

Scripts for accessing on-line resources

Page 25: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Implementations

3270 Admission/Discharge Profile:ICD9 -> MeSH -> Medline

X-Windows Laboratory Summary:Lab terms -> MeSH -> Medline, DXplain,

HSTAT

Mosaic clinical information system

Page 26: Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.

Challenges

What questions arise in different contexts?

What information source is right for each?

How are the concepts translated?

How are complex retrievals performed?

How is the knowledge presented?