Sustaining a biodiversity data infrastructure: OpenUp !, BioCASe and GBIF
Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian...
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Transcript of Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian...
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Common Names Services in OpenUp!
Rainer,H.1, Koller,W.1 & Wandl-Vogt,E.2
1NHM Vienna; 2Austrian Academy of Sciences
open-up.euopen-up.eu
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Description of OpenUp! WP 6
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Multilingual Metadata Enrichment - Common Names
Provider
ABCD 206<xs:element name="FullScientificNameString" type="String">Bellis perennis L.</xs:element>
Common namesAusdauerndes Gänseblümchen (German) Cvetiče ledinsko (Croatian)Daisy (English) …..
ESE-Title: Bellis perennis L.ESE-addTitle: Ausdauerndes Gänseblümchen
Cvetiče ledinsko Daisy
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Sources
GBIF - Vernacular Names Extension to DwCAhttp://tools.gbif.org/dwca-validator/extension.do?id=http://rs.gbif.org/terms/1.0/VernacularName http://darwincore.googlecode.com/svn/trunk/terms/index.htm#vernacularName
Catalogue of Life CNShttp://documents.sp2000.org/AC/Samples/new/ERD2011June7.jpg
EDIT CDM http://dev.e-taxonomy.eu/trac/wiki/CommonDataModel
Anthos CNS www.anthos.es
Common Names Schema
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Common Names Model
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Common Names Schema
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Standards / Sources touched
geography – OGC – www.geonames.org language – ISO 639 (-3 /-6) - www.geolang.com
persons – FOAF – www.viaf.org specimens – ABCD – BIOCASE / GBIFliterature – OLEF (incl. MODS) – BHL / Citebank
descriptions – SDD – ?
transliterations - ?? - ??ethnicities - ?? - ??
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Common Names Service Specifications
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follow Google Refine Reconciliation Service API specifications – http://code.google.com/p/google-refine/wiki/ReconciliationServiceApi
Service Metadata A call to the service without any query will return the service metadata.
Response{ "name": "OpenUp! Common Names Service", "identifierSpace": "http://open-up.eu/commonNames/", "schemaSpace": "http://open-up.eu/commonNames/"}
Query RequestThe query object should be passed as JSON formatted object using the "query" parameter.Single Query ModeQuery the service using a single taxon name.ParametersA query: Name to query forlimit: Limit number of resultstype: should always be "/name/common"
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Common Names Service Specifications
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Example{ "query": "Berberis vulgaris", "limit": 3, "type": "/name/common"}Example{ "id": "uri:still:to:be:defined", "name": "Boasslbee", "type": ["/name/common"], "score": 100.0, "match": true, "language": "bar", "geography": "aut", "period": "1934-1950", "taxon": "Berberis vulgaris", "taxon_id": "uri:taxon:id:provided:by:reference:services", "reference": "uri:of:reference:"}
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Names Service Architecture
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Services for Scientific Names and Concepts (incl. fuzzy matching)Botanical (Kew)Zoological (University of Helsinki)
Service for Common Names botanical & zoological (NHM Vienna)
http://open-up.eu/content/common-names-service
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Common Names Service Architecture
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Names Services for Use
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Catalogue of Life – webservicesPESI – webservices
GBIF – general names registry – IPT installation for OpenUp! (OpenUp!) General Repository for CNGNA / EOL ?
National Standard Lists – incl. Common Names
Thematic Lists ( bats of europe )
Personal level – non taxonomists ( Spices )
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Implementation Common Names for Annonaceae
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Implementation Common Names for Annonaceae
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Implementation Common Names for Annonaceae
open-up.euopen-up.eu
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Final Goal
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Integrate as many sources for as many (european) languages as possible
Names Provision Facility (IPT – or local implementation)
Common Names Service – ext. after OpenUp!