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Chapter 9
Commercial Potential of Microbial Inoculants
for Sheath Blight Management and Yield
Enhancement of Rice
K. Vijay Krishna Kumar, M.S. Reddy, J.W. Kloepper, K.S. Lawrence,
X.G. Zhou, D.E. Groth, S. Zhang, R. Sudhakara Rao, Qi Wang,
M.R.B. Raju, S. Krishnam Raju, W.G. Dilantha Fernando, H. Sudini, B. Du,
and M.E. Miller
K.V.K. Kumar
Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, USA
and
Acharya N G Ranga Agricultural University, Hyderabad, India
M.S. Reddy (*), J.W. Kloepper, and K.S. Lawrence
Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, USA
e-mail: [email protected]
X.G. Zhou
Agri-Life Research and Extension Center, Texas A and M University, College Station, TX, USA
D.E. Groth
LSU AgCenter, Rice Research Station, Rayne, LA, USA
S. Zhang
Tropical REC, University of Florida, Homestead, FL, USA
R.S. Rao
Acharya N G Ranga Agricultural University, Hyderabad, Andhra Pradesh, India
Q. Wang
China Agricultural University, Beijing, China
M.R.B. Raju and S.K. Raju
Andhra Pradesh Rice Research Institute, Maruteru, Andhra Pradesh, India
W.G.D. Fernando
Department of Plant Science, University of Manitoba, Winnipeg, MB, Canada
H. Sudini
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Andhra
Pradesh, India
B. Du
Department of Microbiology, Shandong Agricultural University, Taian, Shandong Province,
China
M.E. Miller
Department of Biological Sciences, Auburn University, Auburn, AL, USA
D.K. Maheshwari (ed.), Bacteria in Agrobiology: Crop Ecosystems,DOI 10.1007/978-3-642-18357-7_9, # Springer-Verlag Berlin Heidelberg 2011
237
9.1 Introduction
Rice (Oryza sativa L.) is an important staple food crop for a larger part of the
world’s population and is produced around the globe. Global rice production was
approximately 680 million tons in 2009. More than 90% of rice is produced in Asia,
with China and India being the lead producers. The other major rice-producing
countries are Indonesia, Bangladesh, Vietnam, Thailand, Myanmar, Philippines,
Brazil, and Japan (Table 9.1). Rice production in the USA, which started 300 years
ago, now has an annual production of 9.2 million tons. Major rice-producing states
of the USA are Arkansas, California, Louisiana, Mississippi, Missouri, and Texas.
The forecasted increase in global population in the coming years is demanding a
need for increase in productivity of rice, although there is only a limited scope for
expansion of crop-growing area especially in densely populated countries such as
Asia (Meunchang et al. 2006). Use of chemical fertilizers for enhancing rice
production is a common practice. However, indiscriminate use of chemical fertili-
zers to increase grain yields in rice has several concerns such as leaching of
fertilizers into ground water, change of microbial balance in soil–root-ecosystem,
increased susceptibility of the crop to pests and diseases, and acidification or
alkalization of soils.
Rice production is affected by many biotic and abiotic stresses including fungal
pathogens that attack the crop from seeding to harvest and cause severe yield
losses. Seed-borne pathogens often reduce the germination and inflict qualitative
and quantitative yield losses (Haque et al. 2007). Among important fungal diseases,
blast (Magnaporthe oryzae, formerly M. grisea or Pyricularia oryzae), sheathblight (Rhizoctonia solani AG 1-1A), brown spot (Bipolaris oryzae), sheath rot
(Acrocylindrium oryzae), stem rot (Sclerotium oryzae), and bakane (Gibberellafujikuroi) cause severe yield losses in rice. Major bacterial diseases include bacte-
rial leaf blight (Xanthomonas campestris pv. oryzae) and bacterial leaf streak
(X. campestris pv. oryzicola) (Bangura and John 1991). Important viral diseases
include tungro, grassy stunt, ragged stunt, yellow dwarf, orange leaf, and hoja
Table 9.1 Production details of major rice-producing countries in the worlda
Rank Country Rice production (million tons)
1 China 187.40
2 India 144.57
3 Indonesia 57.15
4 Bangladesh 43.06
5 Viet Nam 35.94
6 Thailand 32.10
7 Myanmar 31.45
8 Philippines 16.24
9 Brazil 11.06
10 Japan 10.89aFAOSTAT 2007
238 K.V.K. Kumar et al.
blanca. Other important ones include diseases caused by nematodes such as white
tip (Aphelenchoides besseyi) and ufra (Ditylenchus angustus) (Datta 1981).Sheath blight (ShB) is an economically significant disease of rice in all growing
areas of the world. Yield losses of up to 50% are reported when susceptible varieties
are grown (Prasad and Eizenga 2008). Soil bacteria in rice ecosystems typically
exert a significant fungistatic effect on mycelia and sclerotia of the ShB pathogen
(Luo et al. 2005). Effective management of ShB with PGPR application has been
reported (Mew and Rosales 1986; Vasantha Devi et al. 1989; Kanjanamaneesathian
et al. 1998); however, the field results were not consistent due to varying reasons.
This review focuses on recent developments in the management of rice ShB with
PGPR. The topics covered in the chapter include PGPR application in rice, green-
house, and field efficacy of PGPR and the scope of applying them in conjunction
with chemical fungicides under integrated disease management system (IDM) of
ShB. The overall goal of this chapter is to introduce the multistep process that leads
to the development of a new microbial inoculant product and its use and to outline
the beneficial strategies specifically for ShB disease management of rice. In addi-
tion, it attempts to define the major efforts under way to help stimulate the process.
Because product development is integrally related to several tasks including intel-
lectual property issues and to regulatory and liability concerns, these topics are also
included. Data on product development for rice ShB management are not system-
atically available. We have, therefore, used information based on our own research
efforts and, when possible, made comparisons.
9.2 Symptomatology
Initial ShB symptoms appear on lower rice leaf sheaths when the crop is in late
tillering or early internode elongation phase. These lesions appear as green–grey
water soaked at 0.5–3 cm below the collar region as circular, oblong, or ellipsoid
and about 1 cm long. As the disease progresses, the lesions expand with bleached
appearance and a brown border. Under favorable conditions (95% relative humidity
and temperature of 28–32�C), the disease spreads by runner hyphae to upper parts
of plants including leaf blades (Fig. 9.1a). The pathogen also infects the panicle
(Fig. 9.1b) and causes chaffiness of lower grains (Lee and Rush 1983).
9.3 Disease Cycle
The pathogen survives from one crop season to another as sclerotia and mycelia
in plant debris and also through weed hosts in tropical environments (Kobayashi
et al. 1997). In temperate regions, the primary source of inoculum is sclerotia
produced in previous rice crops (Kozaka 1961). The sclerotia float in water during
field preparation and attack newly planted crop. The pathogen produces lesions on
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 239
leaf sheaths and leaf blades. The disease is more aggressive when the crop advan-
ces to the reproductive phase, and the pathogen also infects the rice panicles. New
sclerotia are produced as the lesions mature and these sclerotia drop into the soil
during harvesting, perpetuate, and infect a newly planted crop in the next season
(Suparyono et al. 2003).
9.4 Use of Microbial Inoculants
Currently, ShB is managed through cultural and chemical control methods. Mostly,
disease management is through use of systemic and non-systemic fungicides. Most
widely used fungicides include azoxystrobin, hexaconazole, propiconazole, tebu-
conazole, carbendazim, trifloxystrobin, validamycin, and jinggangmycin. Use of
chemicals in ShB management is creating concerns over environmental pollution,
escalated costs, and pathogen resistance to chemicals. Biological control is a viable
alternative in ShB disease management. However, the use of biocontrol agents in
managing rice diseases is still at its infancy due to varying reasons. A successful
bioagent, when applied to rice ecosystem, should be able to survive, establish,
proliferate, and control target pathogens. Fungal and bacterial biocontrol agents
have been used for control of rice diseases. The popularly used fungal bioagents
against ShB include Trichoderma spp. and Gliocladium spp. These bioagents were
applied either as seed treatment, root dip, or foliar spray (Nagaraju et al. 2002). The
other effective fungal bioagent is Helminthosporium gramineum that produces
a toxin called “ophiobolin.” The toxin is effective in reducing ShB incidence
under field conditions (Duan et al. 2007). The prevailing anaerobic conditions
in rice are unfavorable for the fungal bioagents to survive, establish, and proliferate
in the soil.
Rice ecosystems are rich in bacteria (Yin and Mew unpublished data; Mew et al.
2004). They also have greater adaptability to rice ecosystems compared to fungal
antagonists. Of them, plant growth-promoting rhizobacteria (PGPR) have been
Fig. 9.1 Sheath blight symptoms on rice leaf blades and panicle (a) leaf blades. (b) Formation of
sclerotia on panicle
240 K.V.K. Kumar et al.
used in controlling rice diseases. Besides, these PGPR also contribute to enhanced
growth of the seedlings, induction of systemic resistance against diseases and
thereby increases yields (Pathak et al. 2004). Bacterial strains of the genera such
as Aeromonas, Azoarcus, Azospirillum, Azotobacter, Arthobacter, Bacillus, Clos-tridium, Enterobacter, Gluconacetobacter, Klebsiella, Pseudomonas, and Serratiawere identified as PGPR (Tripathi et al. 2005; Raj et al. 2004; Dey et al. 2004;
Jaizme-vega et al. 2004; Joo et al. 2004; Bonaterra et al. 2003; Cezon et al. 2003;
Esitken et al. 2003; Garica et al. 2003; Munir et al. 2003; Kokalis-Burelle et al.
2002; Khalid et al. 2003; Murphy et al. 2003; Preeti et al. 2002; Gupta et al. 1995;
Bertand et al. 2001; Hamaoui et al. 2001; NandaKumar et al. 2001b; Pan et al. 1999;
Arndt et al. 1998; De Freitas et al. 1997; Shishido et al. 1996; Babalola et al. 2003;
Mirza et al. 2001; Podile and Kishore 2006). In addition to enhancement in plant
growth, PGPR were also contributed to increase N uptake, phytohormone synthesis,
phosphate solubilization, and acquisition of ferric iron through production of side-
rophores (Lalande et al. 1989; Glick 1995; Bowen and Rovira 1999).
Use of PGPR in rice to control major diseases and to enhance yields was earlier
reported (Lucas et al. 2009). A variety of beneficial bacteria were found to colonize
the rhizosphere and aerial parts of rice. Nitrogen-fixing activity and indoleacetic
acid (IAA) production was detected in roots and submerged shoots of field-grown
rice due to these beneficial bacteria (Mehnaz et al. 2001). Rhizosphere bacterial
isolates of rice have an excellent potential of producing biofertilizers. Inoculation
of PGPR in rice increased total dry weight of plants, total N and P uptake through
N fixation, P solubilization capacity, and IAA production (Meunchang et al. 2006).
Use of biofertilizers in cereals was found to significantly increase plant growth and
yields (Boddey et al. 1986; Fages 1994; Kapulnik et al. 1981; Kennedy and Tchan
1992; Pereira et al. 1988). Frequent rhizosphere colonizers of cereal crops and
grasses include N-fixing bacteria such as Azospirillum, Acetobacter, Azoarcus,Herbaspirillum spp. (Baldani et al. 1986; Bally et al. 1983; Bilal et al. 1990;
Dobereiner and Day 1976; Gillis et al. 1989; Reinhold-Hurek et al. 1993), Aero-monas, and Enterobacter spp. (Mehnaz et al. 2001).
9.4.1 Mode of Delivery
Field efficacy of a PGPR strain partly depends on the method of delivery. PGPR
and their formulations are generally delivered as seed treatment, soil amendment,
or root dip in bacterial suspensions prior to transplanting. Other important
methods also include foliar spray or through drip irrigation in different crops
(Podile and Kishore 2006). Success of the PGPR strain is dependent on under-
standing the use of specific delivery system and its advantages over other
methods. In rice, PGPR is delivered through seed, as soil amendment, seedling
dip, and foliar spray, and through combinations of these methods. Against rice
ShB, the popular delivery systems are through seed, soil, and foliar applications
(Nakkeeran et al. 2005).
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 241
9.4.1.1 Seed Treatment
An ideal bacterial antagonist when treated to seed should colonize the rhizosphere
during seed germination (Weller 1983), and several application methods can be
used to accomplish this. Treating seeds with different PGPR was found to be highly
effective in managing rice ShB disease. Seed coating of P. fluorescens (B41) wasfound to be comparatively more effective than soil drenching and foliar sprays
against ShB under greenhouse conditions (Kazempour 2004). Seed bacterization of
Pseudomonas strain GRP3 followed by root dipping resulted in ShB reduction in
rice up to 46% (Pathak et al. 2004). Seed treatment with PGPR mixtures also
resulted in effective ShB management. Soaking rice seeds in P. fluorescensmixture
of strains PF1 and PF2 at 108 cfu g�1 for 24 h were effective in reducing ShB
incidence under field conditions (Nandakumar et al. 2001a). Seed bacterization
with fluorescent Pseudomonads such as P. fluorescens and P. putida V14i was
highly effective in reducing ShB severities by 68 and 52%, respectively, in seed bed
and field experiments (Malarvizhi 1987) due to protection of the plants from
infection. Subsequent planting in the same field after planting the first crop, in
which the seeds were treated with bacteria, also showed reduced ShB severity
(Mew and Rosales 1986). Seed treatment with peat-based formulation of P. fluor-escens (PfALR2) at the rate of 20 g kg�1 resulted in ShB disease control effectively
under greenhouse and field conditions (Rabindran and Vidhyasekaran 1996).
Induced systemic resistance, plant growth promotion, and sheath blight control
was observed by treating rice seeds with three isolates of Pseudomonas aeruginosa.The biocontrol agents were also found effective in reducing blast and brown spot
diseases in rice due to increased accumulation of salicylic acid and pathogenesis-
related peroxidases (Saikia et al. 2006).
9.4.1.2 Seedling Dip
The ShB pathogen is soil-borne, attacks the rice seedlings, and establishes host–
pathogen relationship by root entry (Nakkeeran et al. 2005). Seedling root dip
treatment of rice prior to transplanting for a period of 2 h in talc-based formulations
of PGPR mixtures at 20 g/L reduced ShB incidence effectively (Nandakumar et al.
2001a). Earlier, seedling root dip in a talc-based formulation of P. fluorescensbefore transplantation into main field suppressed ShB disease and improved
grain yields (Rabindran and Vidhyasekaran 1996). A novel application method of
B. megateriummultiplied in empty fruit bunches (EFB) as carrier was reported. The
rice seedlings when treated with bacterial inoculum multiplied in EFB carrier had
significantly enhanced plant height, number of roots, and dry matter of root and
shoot. The method offered a scope of developing new delivery system and granula-
tion of bioinoculants for effective control of diseases as well as for enhancing grain
yields (Al-Taweil et al. 2009).
242 K.V.K. Kumar et al.
9.4.1.3 Soil Application
Soil application of PGPR has also been reported to be an effective method of
controlling soil-borne diseases of rice (Rabindran and Vidhyasekaran 1996). For
effective suppression of ShB, the population thresholds of the antagonist in soil
should be higher than 1 � 106 cfu g�1 during early stages of infection by R. solani(Li et al. 2003). Effective management of ShB is feasible only when the applied
bioagents survive, establish, proliferate, and control pathogen populations in soils.
A strain of B. licheniformis (CHM1) isolated from rice fields was found to be highly
effective in protecting rice seedlings from ShB disease as well as in plant-growth
promotion when applied as soil drenching around root zone (Wang et al. 2009). Soil
application of peat formulation of P. fluorescens (PfALR2) effectively controlled
ShB disease under greenhouse and field conditions (Rabindran and Vidhyasekaran
1996). Broadcasting of talc-based formulation mixtures of Pf1 and Pf7 at 30 days of
transplanting of rice seedlings reduced ShB and increased grain yields significantly
under field conditions (Nandakumar et al. 2001a). The population levels of PGPR in
rice fields are an important factor for effective control of ShB disease. Mixing the
potting soil with bacterial suspensions of different P. aeruginosa mutants coupled
with a soil drench at a concentration of 5 � 107 cfu g�1 elicited ISR in rice
seedlings to blast and ShB diseases under greenhouse conditions (Vleesschauwer
and Hofte 2005).
9.4.1.4 Foliar Application
Survival rates and application efficiencies of PGPR as foliar sprays against plant
diseases is generally affected by variations in microclimate. Nutrient concentrations
of amino acids, organic acids, and sugars that exude through lenticels, stomata, and
hydathodes vary in the phyllosphere (Nakkeeran et al. 2005). The efficacy of PGPR
against ShB under greenhouse and field conditions is dependent on time of appli-
cation. Spraying of P. fluorescens at 7 days before pathogen inoculation resulted ineffective ShB reduction (59–64%) over simultaneous application at 7 days after
inoculation. Further, grain yields and 1,000 grain weight were also enhanced with
the prophylactic sprays (Rajbir Singh and Sinha 2005). Commercial formulations of
P. fluorescens (Ecomonas and Florezen P) when sprayed three times at 10-day
interval after disease initiation under field conditions resulted in ShB control by
14–38% besides significant increase in grain yields (Vijay Krishna Kumar et al.
2009). Foliar sprays with floating pellet formulation of B. megaterium were effec-
tive in rice ShB suppression under greenhouse conditions (Wiwattanapatapee et al.
2007). Spraying of antifungal metabolites of Streptomyces spp. (SPM5C-2) at the
rate of 500 mg ml�1 significantly decreased ShB and blast disease development by
82 and 76%, respectively, under greenhouse conditions (Prabavathy et al. 2006).
Broadcasting of floating pellets formulation and spraying of water-soluble formu-
lation of B. megaterium resulted in effective control of rice ShB disease under
greenhouse and field conditions (Kanjanamaneesathian et al. 2007).
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 243
9.4.1.5 Multiple Delivery Systems
Protection of spermosphere, rhizosphere, and phylloplane from infection courts of
plant pathogens through multiple delivery systems of PGPR offers a comprehensive
means of plant disease management (Nakkeeran et al. 2005). Talc-based formula-
tions of two P. fluorescens strains (PF1 and PF7) when applied through seed, root,
soil, and foliar sprays significantly reduced ShB and pest (leaf-folder) incidence in
rice under greenhouse and field conditions. The bacterial mixture performed better
than individual strains with a reduction of 62% of ShB and 47–56% of leaffolder
incidence (Radja Commare et al. 2002). Combined applications of P. fluorescensstrains (PF1, FP7, and PB2) as bacterial suspensions or as talc-based formulations
through seed, root, foliar, and soil application significantly reduced the ShB inci-
dence (45%) under greenhouse and field conditions over their individual applica-
tions. Further, a significant increase in yield was obtained with application of
mixtures over their individual applications. Fluorescent Pseudomonas application(PF1 and FP7) either as a suspension or talc-based formulation through seed, root,
soil, and foliar means effectively reduced rice ShB incidence and promoted plant
growth and grain yields (Nandakumar et al. 2001a). Similar results on ShB disease
suppression and enhanced yields were reported with peat-based formulations of
P. fluorescens (PfALR2) as seed treatment, root treatment, soil application, and
foliar spraying. Further, the efficacy of combined application methods was compa-
rable with fungicide treatments (Rabindran and Vidhyasekaran 1996).
9.4.2 Formulations
A formulated PGPR should ideally possess high rhizosphere competence, plant
growth promotion, ease for large-scale multiplication, wide range of plant disease
control, consistent in disease control, and compatible with environment and other
rhizobacteria (Nakkeeran et al. 2005). Besides, the bacterial inoculants should be
able to tolerate desiccation, heat, oxidizing agents, and UV radiations (Jeyarajan
and Nakkeeran 2000). The formulated product should meet the important criteria
such as satisfactory shelf life, non-phytotoxic nature, water solubility, ability to
withstand environmental fluctuations and compatibility with other agrochemicals.
Besides, it should be cost-effective with ready availability of carriers at a cheaper
rate and should not impart mammalian toxicity (Nakkeeran et al. 2005; Jeyarajan
and Nakkeeran 2000).
The carrier materials used in PGPR formulations are broadly categorized into
organic and inorganic ones. The commonly used organic carriers are peat, turf, talc,
lignite, kaolinite, pyrophyllite, zeolite, montmorillinite, alginate, pressmud, sawdust,
and vermiculite (Nakkeeran et al. 2005). In general, PGPR survive longer in carriers
with smaller particle sizes than in those with larger particle sizes. Carriers with
smaller size will have more surface area that enables increased resistance to desicca-
tion of PGPR through increased coverage of bacterial cells (Dandurand et al. 1994).
244 K.V.K. Kumar et al.
Commonly available PGPR formulations are talc formulations, peat formula-
tions, press mud formulations, vermiculite formulations (Nakkeeran et al. 2005),
water-soluble granular formulations, liquid formulations, floating pellet formula-
tions, and formulations with EFB as carriers. Details of different PGPR formula-
tions that exhibited effective control of rice ShB disease under greenhouse or field
conditions are given in Table 9.2.
9.4.3 Shelf life
Effective disease control by PGPR is possible only when the formulated product
delivers a sufficient number of viable cells. So, determining the shelf life and
viability of a commercial bio-product is a crucial step. The shelf life of PGPR in
the formulated product is dependent on the type of carrier material used. Talc is an
excellent carrier material for PGPR with low moisture equilibrium, relative hydro-
phobicity, reduced moisture absorption, and chemical inertness (Nakkeeran et al.
2005). The population levels of PGPR (fluorescent Pseudomonads) did not decline
in talc powder with 20% xanthan gum after storage for 2 months at 4�C (Kloepper
and Scroth 1981).
Vermicompost is comparatively a better carrier material than lignite for bioino-
culants with high nitrogen, phosphorus, potassium, copper, manganese, and iron
besides possessing an ideal pH. The shelf life of vermicompost-based formulations
is greater than that of lignite-based ones. The population levels of B. megateriumand P. fluorescens were very high (7.6 � 108 and 1 � 108 cfu g�1 of dry weight,
respectively) at the end of 360 days when vermicompost was used as carrier
(Gandhi and Saravanakumar 2009).
The shelf life of peat-based formulations depends on the availability of good
quality peat. Heat sterilization of peat results in release of toxic substances that are
detrimental to bacteria thus affecting their population levels in the formulation
(Bashan 1998). The population levels of P. fluorescens (2.8 � 106 cfu g�1) in peat-
based formulation was maintained up to 8 months (Vidhyasekaran and Muthamilan
1995), whereas the shelf life of P. chlororaphis and B. subtilis were more than 6
months (Kavitha et al. 2003; and Nakkeeran et al. 2004). The use of press mud and
vermiculite-based PGPR formulations are also in practice. The viability of Azos-pirillum spp. in press mud formulation is higher than in lignite (Muthukumarasamy
et al. 1997) whereas in vermiculite, its viability is retained up to 10 months (Saleh
et al. 2001).
9.4.4 Root Colonization
Of different soil microbial populations, bacteria residing in the rhizosphere are the
most beneficial. Bacterial communities in the rhizosphere vary in different root
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 245
Table
9.2
CurrentlyusedPGPRform
ulationsagainstrice
sheath
blightdisease
PGPRstrain
Typeofform
ulation
Methodofapplication
References
Bacillusmegaterium
EFB(empty
fruitbunches)powder
Seedlingdip
Al-Taw
eilet
al.(2009)
BacilluslicheniformisCHM1
Bacterial
cellsuspension
Soilapplication
Wanget
al.(2009)
Bacillusmegaterium
(No16)
Floatingpellets
Broadcasting
Kanjanam
aneesathianet
al.(2007)
Bacillusmegaterium
(No16)
Water
soluble
granules
Foliar
spray
Kanjanam
aneesathianet
al.(2007)
Pseudo
mona
sflu
orescens(Pf1
andFP7)
Bacterial
suspension/talc-based
Seed+root+soil+foliar
Nandakumar
etal.(2001a)
Pseud
omon
asfluo
rescensand
Pseudo
mona
s.Aerug
inosa
Bacterial
cellsuspension
Seed+root+soil
Vleesschauwer
andHofte(2005)
Pseud
omon
asfluo
rescens(PfA
LR2)
Peatbased
Seed+root+soil+foliar
RabindranandVidhyasekaran
(1996)
Pseudo
mona
sflu
orescens(Pf1
andFP7)
Talc-based
Seed+root+soil+foliar
Radja
Commareet
al.(2002)
Beneficial
bacteria(N
F1,NF3,NF52,
NF49,CT6-37,andW23)
Bacterial
cellsuspension
Foliar
spray
Lai
Van
Eet
al.(2001)
Fluorescentandnon-fluorescent
Pseudomonads
Bacterial
cellsuspension
Seedtreatm
ent
Mew
andRosales(1986);Vasantha
Deviet
al.(1989)
Bacillusmegaterium
Floatingpellets
Broadcast
+spray
Wiwattanapatapee
etal.(2007)
Pseudo
mona
sflu
orescens
Talc-based
Foliar
spray
Vijay
KrishnaKumar
etal.(2009)
Pseudo
mona
saeruginosa
Bacterial
cellsuspension
Foliar
spray
Saikia
etal.(2006)
Antagonisticbacteria
Bacterial
cellsuspension
Seed+foliar
Chen
etal.(1996)
246 K.V.K. Kumar et al.
zones and their composition can be altered by changes in root exudate composition
(Yang and Crowley 2000). Root exudates of rice plants were found to exert
a positive influence on the motility of these bacteria toward plant roots (Bacilio-
Jiminez 2003). Earlier studies indicated that the rhizosphere isolates of rice were
able to induce IAA production and have phosphate solubilization capacity. Further,
these PGPR isolates were found to promote seed germination, root length, plant
height, and dry matter production of shoot and roots in rice (Ashrafuzzaman et al.
2009). Application of bio-inoculants was found to enhance rice growth through
production of total sugars, reducing sugars, amino nitrogen content, PGP sub-
stances in the root exudates, and biological nitrogen fixation. The microbial con-
sortium viz., Azospirillum lipoferum-Az204, B. megaterium var. phosphaticum, andP. fluorescens Pf1 when applied to rice improved the colonization potential,
sustainability within the inoculants, and enhanced plant growth when compared
to their application individually (Raja et al. 2006).
Mirza et al. (2006) reported a nitrogen-fixing, phytohormone-producing Pseu-domonas isolate (strain K1) that had a capacity of fixing nitrogen in inoculated rice
plants and its efficacy was comparable to non-Pseudomonas nitrogen-fixing PGPR.Use of PGPR also alleviates zinc deficiency in rice plants. Zinc deficiency is a
serious problem in rice production (Anon 1993). Inoculation of rice fields with
PGPR had a significant positive impact on root length (54% increase), root weight
(74%), root volume (62%), root area (75%), shoot weight (23%), panicle emer-
gence index (96%), and Zn mobilization efficiency, thereby reducing the cost
incurred in the application of chemical Zn fertilizers (Muhammad et al. 2007).
Application of diazotrophs such as Rhizobium leguminosarum bv. trifolii (E11),Rhizobium spp. (IRBG74), and Bradyrhizobium sp. IRBG271 in lowland rice fields
enhanced N, P, and K uptake by 10–28% due to rhizobial inoculation. In addition,
the uptake of Fe was enhanced by 15–64%. Further, the growth promotion in rice
was due to changes in growth physiology or root morphology rather than biological
nitrogen fixation (BNF) (Biswas et al. 2000).
9.5 Sheath Blight Management
In rice, PGPR offer a promising means of controlling plant diseases besides
contributing to the plant resistance, growth, and grain yields (Mew and Rosales
1992). Of different PGPR, fluorescent Pseudomonads and Bacillus spp. group of
bacteria are widely used against ShB. Their application promotes plant growth by
direct and indirect mechanisms. Direct growth promotion is due to production of
phytohormones, solubilization of phosphates, increased uptake of iron through
production of siderophores, and volatile metabolites. Indirect way of plant growth
promotion is due to mechanisms of antibiosis, competition for space and nutrients,
parasitism or lysis of pathogen hyphae, inhibition of pathogen-produced enzymes
or toxins, and through induced systemic resistance (ISR). The ISR in rice against
ShB is either due to enhanced chitinase or peroxidase activity (Nandakumar et al.
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 247
2001b). However, no correlation was observed between chitinase production and
ShB suppression (Thara and Gnanamanickam 1994). Strains of P. fluorescens werefound to produce siderophores, volatile metabolites, extracellular secretions, and
antibiotics that were inhibitory to ShB pathogen. Further, the strains reduced
germination and caused lysis of sclerotia (Kazempour 2004). Rhizosphere isolates
of P. fluorescens produced b-1,3-glucanase, salicylic acid, and HCN, and a signifi-
cant relationship was observed between antagonism of the bacterium and the
production of these substances (Nagarajkumar et al. 2004).
Bacillus spp. are endospore-producing gram-positive bacteria, and some strains
have been used in biocontrol of rice diseases. Strains of B. subtilis and B. mega-terium exhibit inhibition of Rhizoctonia solani (Luo et al. 2005). The fermented
product of Bacillus (Drt-11) is highly inhibitory to the sclerotial germination,
hyphal growth, and colony diameter besides enhancing rice seedling growth
(Chen and Hui 2006). Strains of Bacillus produce a thermo and proteinase – stable
antagonistic substance (P1) that is effective against rice ShB and blast pathogens
(He et al. 2002). The B. subtilis (AUBS1) strain produces phenylalanine ammonia-
lyase (PAL), peroxidase (PO), and certain pathogenesis-related (PR) proteins in
rice leaves when applied against ShB disease. Accumulation of thaumatin-like
proteins, glucanases, and chitinases are the other important substances in plants
against ShB by these bioagents (Jayaraj et al. 2004). The other promising bacteria
against rice ShB include Streptomyces spp. and Serratia marcescens. The antifun-gal metabolites of Streptomyces spp. (PM5, SPM5C-1, and SPM5C-2) were highly
effective against mycelial growth of rice ShB and blast pathogens under in vitro
conditions. Greenhouse studies revealed that spraying of the strain SPM5C-2 at
500 mg ml�1 significantly reduced ShB and blast diseases by 82 and 76%, respec-
tively (Prabavathy et al. 2006). Culture filtrates of S. marcescens exhibited
enhanced reduction of sclerotial viability of ShB pathogen, when applied with
reduced doses of fungicides such as flutolanil, pencycuron, and validamycin
(Someya et al. 2005).
In order to identify a potential biocontrol agent, researchers have been spending
their time on several microbes in areas of isolation, identification, and purification
which is routine. This is a laborious process demanding efforts of time and man-
hours. Here, we have provided our own selection of a potential microbial inoculant
against rice ShB.
9.5.1 Screening of Different PGPR Against ShB Pathogen andSeedling Growth Promotion Under Laboratory Conditions
Seventy PGPR strains that belong to Bacillus, Paenibacillus, Brevibacillus, andArthrobacter were selected from the bacterial culture collection of the Phytopathol-
ogy Laboratory of Auburn University. These PGPR strains were found to be highly
effective in inducing growth-promoting effects in various crops. These strains were
screened against rice ShB pathogen, ShB lesion spread and in promoting rice
248 K.V.K. Kumar et al.
seedling growth under laboratory conditions. The mycelial growth inhibition of
R. solani was as high as 83% with B. subtilis MBI 600, compared to the control.
Only four strains completely inhibited the germination of sclerotia. The ShB lesion
spread was determined by highest relative lesion height method (HRLH) and for
effective strain (B. subtilis MBI 600) was found to be only 2.9 as against control
(100). Highest seedling vigor of 13,600 was recorded in comparison to that of control
(4,867) on 10-day-old seedlings. The PGPR strain, B. subtilisMBI 600 was found to
be highly effective in all the screening assays and was selected for further studies.
To further test the efficacy of B. subtilis MBI 600, the strain was produced in a
commercial proprietary liquid formulation by Becker Underwood, Ames, Iowa,
USA. The formulated strain MBI 600 has a proprietary trade name as Integral®. The
product is stored at room temperatures prior to use. The minimum concentration of
Integral in liquid formulation is 2.2 � 1010 cfu ml�1. The details of different
application methods of Integral are shown in Table 9.3.
9.5.2 Efficacy of Integral
To assess the biocontrol suppression of ShB by using antagonistic bacteria and their
combination with fungicide under field conditions for a long time, antagonistic
bacteria and fungicide used to control ShB must be evaluated for durability effect.
Improved plant growth and health by PGPR is either due to direct mechanisms
such as improvement in plant uptake through solubilization of mineral phosphates
Table 9.3 Benefits and use rates of Integral in different crops
Crop Method of
application
Rates of application Target pathogens
Peanut In-furrow 0.1–1.2 fl oz/acre Rhizoctonia, Fusarium,Aspergillus
Cotton, vegetables, soybean
corn
In-furrow 0.1–1.2 fl oz/acre Rhizoctonia, Fusarium
Non-bearing plants (Cherry)
in greenhouses
Soil mix 1.3–13 fl oz/acre Fusarium, Rhizoctonia
Cotton Seed 0.6–2.4 fl oz/100 lb seed Fusarium RhizoctoniaSoybeans Seed 0.13 fl oz/100 lb seed Fusarium RhizoctoniaGreen beans, snap beans,
lima beans, kidney
beans, navy beans,
pinto beans, wax
beans, pole beans,
garden beans, peas,
field beans
Seed 0.6–2.4 fl oz/100 lb seed Fusarium Rhizoctonia
Alfalfa, forage, turf Seed 0.2–12 fl oz/100 lb seed Fusarium RhizoctoniaWheat, barley Seed 0.1–0.6 fl oz/100 lb seed Fusarium RhizoctoniaField corn, sweet corn Seed 0.6–2.4 fl oz/100 lb seed FusariumCanola Seed 1.6–3.8 fl oz/100 lb seed Fusarium Rhizoctonia
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 249
and other nutrients (De Freitas et al. 1997; Gaur 1990), nitrogen fixation (Boddey
and Dobereiner 1995), and phytohormone production such as indole 3-acetic acid,
gibberellic acid, cytokinins, and ethylene (Arshad and Frankenberger 1993; Glick
1995). Indirect growth promotion is through biological control of plant pathogens
by producing siderophores (Scher and Baker 1982), antibiotics (Shanahan et al.
1992), hydrogen cyanide (Flaishman et al. 1996), lytic enzymes, and competition
for nutrients and space.
9.5.2.1 In-Vitro Inhibition of ShB Pathogen
The B. subtilisMBI 600 strain of Integral was further characterized for determining
its mode of action against ShB pathogen. The PGPR strain was isolated from the
formulation on TSA and confirmation of its purity was carried out using 16s rDNA
sequence homology and by measuring the 16s rDNA sequence with 1,409 base
pairs of the isolate. The BLAST analysis of the sequencing results confirmed 100%
similarity with B. subtilis. The MBI 600 strain was highly effective against the ShB
pathogen, R. solani and repeatedly shown significant results in inhibiting mycelial
growth (Fig. 9.2) and germination of sclerotia (Fig. 9.3) under in-vitro conditions.
A strong zone of inhibition (3 mm) between mycelial growth of pathogen and
bacterium was observed. Inhibition of sclerotial germination was about 98% at a
concentration of 2.2 � 109 cfu ml�1 whereas at a concentration of
2.2 � 108 cfu ml�1, the inhibition was 37%. Integral was not effective in inhibiting
sclerotial germination at concentrations of 2.2 � 106 and 2.2 � 107 cfu ml�1.
Highest inhibition of sclerotial growth was obtained at a concentration of
2.2 � 109 cfu ml�1 (79%), followed by at 2.2 � 108 cfu ml�1 (72%). Integral
was also effective at lower concentrations with sclerotial growth inhibitions ranging
from 29 to 60% (Table 9.4).
Efficacy of Integral was evaluated in reducing ShB lesions on rice leaves
under in vitro conditions by detached leaf piece assay. Integral concentrations of
Fig. 9.2 Inhibition of mycelial growth of Rhizoctonia solani challenged with Integral
250 K.V.K. Kumar et al.
2.2 � 106 through 2.2 � 109 cfu ml�1 were sprayed onto rice leaf pieces (8 cm)
separately. Later the leaves were inoculated with 1-week-old sclerotia of R. solaniat the centre and leaves were incubated in Petri dishes containing moistened filter
papers. ShB lesion length around sclerotium was recorded after 5 days and disease
severity was assessed by highest relative lesion height (HRLH) method. As shown
in Fig. 9.4, Integral at 2.2 � 109 cfu ml�1 significantly reduced ShB lesion spread
on detached rice leaves (4.7) (Table 9.4). At other concentrations, the lesion spread
ranged from 23 to 93 as against untreated control (100).
Integral was tested positive for production of siderophores. However, pro-
duction of IAA, HCN, cellulase, chitinase, and phosphate solubilizing capacity
when tested were negative. Siderophores are low-molecular-weight iron-chelating
agents produced by PGPR that can create iron nutrient competition in soils to
plant pathogens. Since the element iron is present in low quantities in soils,
siderophore production is a strategy by the PGPR to compete with soil-borne
plant pathogens.
Fig. 9.3 Inhibition of sclerotial germination of Rhizoctonia solani by Integral
Table 9.4 Efficacy of Integral on sclerotial germination and sheath blight lesion symptoms of rice
Concentration1 % Inhibition of
sclerotial germination2% Inhibition of sclerotial
growth compared to control3ShB lesion
spread4
2.2 � 106 CFU/ml 0c 28.5d 92.6b
2.2 � 107 CFU/ml 0c 59.5c 71.6c
2.2 � 108 CFU/ml 36.7b 71.8b 22.7d
2.2 � 109 CFU/ml 97.7a 78.8a 4.7e
Control 0c – 99.2a
Means followed by a common letter in the columns are not significantly different at p � 0.051Integral applied at these concentrations to test on sclerotial germination, growth of mycelia, and
suppression of ShB lesions2Sclerotial germination was recorded at 3 days after incubation3Sclerotial growth was recorded at 5 days after incubation and4ShB lesion spread was recorded by Highest Relative Lesion Height method at 7 days after
inoculation
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 251
9.5.2.2 Rice Plant Growth Promotion
Seed treatment with Integral was highly effective in promoting rice seedling
development both under laboratory and greenhouse conditions. Under in vitro
conditions, significantly higher root and shoot lengths were observed with Integral
over untreated control. Increase in root and shoot lengths was noticed with an
increase in Integral concentration from 2.2 � 106 cfu ml�1 to 2.2 � 109 cfu ml�1.
As shown in Fig. 9.5, highest root and shoot lengths (47.5 and 39.1 mm, respec-
tively) were recorded at a concentration of 2.2 � 109 cfu ml�1 as against control
(14.3 and 7.6 mm of root and shoot lengths respectively).
Under greenhouse conditions, seed treatment with Integral significantly
improved rice seed germination, seedling emergence, and plant growth. The percent
germination of seeds sown in 15 cm pots filled with field soil was highest at a
concentration of 2.2 � 109 cfu ml�1 (88.9%) as against untreated control (61.1%)
at 7 days after sowing (DAS). Integral application significantly improved root
and shoot lengths at 15 DAS. Highest root length and shoot length were recorded
at a concentration of 2.2 � 109 cfu ml�1 (166 and 335 mm respectively) as against
untreated control (73 and 222 mm respectively) (Fig. 9.6).
9.5.2.3 Chemical Compatibility
Currently, ShB disease management strategy is through use of systemic fungicides
and also with certain non-systemic fungicides (Pal et al. 2005). Pathogen resistance tothese systemic fungicides is of concern, thus demanding integration of PGPR in IDM.
Since, host plant resistance to ShB range only from very susceptible to moderately
susceptible levels in rice (Groth and Bond 2007), use of chemical fungicides has
become a necessary component for an effective ShB management. For effective
functioning of PGPR under the ambit of IDM, their compatibility with commonly
used fungicides and insecticides in rice is also mandatory (Mew et al. 2004).
Fig. 9.4 Suppression of
sheath blight lesions in a
detached leaf assay with
Integral
252 K.V.K. Kumar et al.
Combined applications of PGPR with chemical fungicides are an important IDM
package against ShB. Of different PGPR, Pseudomonads and Bacillus spp. werefound to be very effective as a supplement in IDM. Greenhouse and field studies
against rice ShB with different PGPR isolated from farmyard manure, rice seed,
phyllosphere, and rhizosphere proved that three bacteria, P. fluorescens (PF-9),
Bacillus sp. (B-44), and a chitinolytic bacterium (Chb-1) are compatible with
carbendazim at 500 and 1,000 ppm concentrations. Of these, PF-9 was most
effective in reducing ShB severity either alone or in combination with one spray
of 0.1% carbendazim, followed by combination of PF-9 and B-44 (Laha and
Fig. 9.5 Effect of Integral on
rice seed development
Fig. 9.6 Efficacy of Integral
on rice seedling growth
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 253
Venkataraman 2001). The B. subtilis (Bs-916) when applied along with jinggang-
mycin was found to colonize the root system effectively. Further, the population
density of BS-916 was maintained in its presence without any further decline (Chen
et al. 2003).
In order to use Integral in ShB management, it has to be compatible with existing
agronomic practices and commonly used chemical fungicides in rice production
systems. In our ongoing research, we have attempted to study our classical product
Integral according to the assays described by Shanmugam and Narayanasamy
(2009) under in vitro conditions. Briefly, in this assay, a loop full of MBI 600
strain onto Nutrient Agar (NA) plates amended with various concentrations
(100–1,000 ppm) of fungicides such as propiconazole, validamycin, benomyl,
carbendazim, tricyclazole, mancozeb, azoxystrobin, and hexaconazole. Plates
were later incubated at room temperature for 48 h and growth of bacterium was
monitored. Further compatibility studies with azoxystrobin and carbendazim were
carried out according to Omar et al. (2006) wherein 100 mL of bacterial inoculum
was added to 250 ml yeast peptone glucose (YPG) liquid medium amended with
fungicides at concentrations at 200 and 400 ppm and incubated on a shaker, growth
of bacterium was enumerated on NA after serial dilution.
Integral exhibited good tolerance to hexaconazole, propiconazole, and valida-
mycin, moderately to tricyclazole and slightly to benomyl and mancozeb at
1,000 ppm. It was highly compatible with carbendazim and azoxystrobin up to
400 ppm whereas complete inhibition was obtained with these fungicides at
800 ppm (Table 9.5). Compatibility to azoxystrobin and carbendazim showed up
to 400 ppm, and good growth of Integral was in carbendazim- and azoxystrobin-
amended medium (Figs. 9.7 and 9.8).
9.5.2.4 Efficacy of PGPR Against ShB Under Greenhouse and Field
Conditions
The time of application of PGPR has significant influence in the management of
ShB disease. Ren et al. (2006) reported that the optimum time of application
Table 9.5 Compatibility of Integral with commonly used fungicides
Fungicides Fungicide concentrations (ppm)a
100 200 400 600 800 1,000
Propiconazole +++ +++ +++ +++ +++ +++
Validamycin +++ +++ +++ +++ +++ +++
Benomyl +++ +++ +++ +++ ++ +
Carbendazim +++ +++ +++ + �� ��Tricyclazole +++ +++ +++ +++ +++ ++
Mancozeb +++ +++ +++ ++ + +
Azoxystrobin +++ +++ +++ + �� ��Hexaconazole +++ +++ +++ +++ +++ +++aGrowth of Integral in NA amended with fungicides: +++ ¼ Good; ++ ¼ Moderate; + ¼ Slight;
�� ¼ No growth
254 K.V.K. Kumar et al.
of PGPR against ShB under field conditions was during the first day of inoculation
of R. solani. Reduction in ShB severity under field conditions by PGPR is also
dependent on the bacterial concentration. It is interesting to note that the PGPR
when applied as consortia and in conjunction with other fungal antagonists offered
synergistic effect over their individual applications in ShB disease reduction. Talc-
based formulations of two P. fluorescens strains (PF1 and PF7), when applied as
seed, soil, and root dip treatments and foliar sprays, significantly reduced ShB and
leaf-folder incidence under greenhouse and field conditions. The PGPR mixture
proved to be more effective over their individual applications (Radja Commare
et al. 2002). Combined use of P. fluorescens and Trichoderma viride was effective
Fig. 9.7 Compatibility of Integral with Carbendazim. Values are means of five replications.
Means followed by a common letter are not significantly different at p � 0.05
Fig. 9.8 Compatibility of Integral with Azoxystrobin. Values are means of five replications.
Means followed by a common letter are not significantly different at p � 0.05
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 255
in rice ShB reduction and enhanced seedling growth (Mathivanan et al. 2006).
Bacillus spp. exhibited synergistic effect when used in conjunction with T. viride(Das et al. 1998) and Gliocladium virens (Sarmah 1999) against ShB. The fermen-
ted product of Bacillus strain Drt-11 when applied in combination with biofungi-
cide, Jinggangmeisu WP (20%) proved to be more effective against ShB over their
individual applications (Chen and Hui 2006).
Our own studies with Integral under greenhouse and field studies effectively
reduced ShB incidence in rice. In a typical greenhouse assay, Integral was evaluated
at concentrations of 2.2 � 106 to 2.2 � 109 cfu ml�1 as seed treatment (ST),
seedling root dip (SD), and foliar sprays (FS). Seed treatment with Integral at
concentrations of 2.2 � 108 and 2.2 � 109 cfu ml�1 significantly improved percent
germination over untreated control. Further, the root and shoot lengths were signifi-
cantly improved (12.2 and 40.7 cm respectively) at 2.2 � 109 cfu ml�1 as against
untreated control (7.9 and 33.8 cm respectively) at 25 DAS. Significant reduction in
ShB severity (9.2 vs. 24.1 in untreated control) (Fig. 9.9), increase in plant height
(73.2 vs. 62.7 cm in untreated control) and number of tillers/plant (11.9 vs. 8.0 in
untreated control) was obtained when Integral was applied at 2.2 � 109 cfu ml�1 as
seed treatment (ST) þ seedling root dip (SD) þ foliar sprays (FS).
Our field studies at Andhra Pradesh Rice Research Institute (APRRI), India
during 2009 indicated significant improvement in root and shoot lengths or rice
seedlings in nursery with Integral seed treatment at 2.2 � 108 and 2.2 �109 cfu ml�1 over untreated control. On a transplanted crop, Integral application as
ST þ SD þ FS at 2.2 � 109 cfu ml�1 significantly reduced sheath blight severity
(19.2 vs. 69.7 in control) and percent diseased tillers (25.1 vs. 99.4 in control)
Fig. 9.9 Suppression of sheath blight severity with Integral under greenhouse conditions
256 K.V.K. Kumar et al.
(Fig. 9.10). Plant height (98.1 vs. 78.5 cm in control), tillers/plant (12.8 vs. 10.0
in control), and grain yields were maximum with Integral application at 2.2 �109 cfu ml�1 as ST þ SD þ FS. Integral was also effective in reducing ShB seve-
rity and promoting growth and grain yields at a concentration of 2.2� 108 cfu ml�1.
9.6 Conclusions
As shown by the examples discussed in this chapter, PGPR have good potential in
the management of rice ShB. It is generally believed that the field efficacy of
a particular PGPR strain is dependent on its root colonization capacity. According
to this reasoning, rhizosphere competence of a PGPR strain is a desirable trait for its
effective root colonization and subsequent disease control. Earlier reports indicated
that diversity of PGPR in rice rhizosphere is changing according to soil salinity.
With increase in soil salinity, the population levels of Pseudomonas spp. decreased.In non-saline sites of rice rhizosphere, fluorescent Pseudomonads are the dominant
species whereas in saline sites, these were replaced by salt tolerant species such
as P. alcaligens and P. pseudoalcaligens. Further, organic farming was found to
significantly enhance the diversity of PGPR populations in saline soils (Rangarajan
et al. 2002).
It should be noted that although rhizosphere competence is considered important
for effective PGPR biocontrol agents, there could be exceptions. For example, if a
particular PGPR-based product is applied as a foliar spray, rhizosphere colonization
would not be strictly required. For example, with the product Intergral, which was
highly effective in biocontrol of ShB in field trials in India, one application method
was a foliar spray. To date, there are no published studies examining possible
rhizosphere competence or root colonization on rice by the PGPR strain contained
in Integral (B. subtilis strain MBI600).
Fig. 9.10 Sheath blight severity under field conditions
9 Commercial Potential of Microbial Inoculants for Sheath Blight Management 257
Several biotic and abiotic factors also have significant impact on the field
consistency of a formulated PGPR strain in rice ShB management. Since gram-
positive bacilli produce endospores that can withstand desiccation and have a long
shelf life, they are considered to be ideal candidates for commercial use against
ShB. Fungicidal compatibility of selected PGPR strain is another important factor
that determines the efficacy of PGPR under IDM. Consistent efforts are therefore
needed to select PGPR strain with all the desirable traits that contribute to effective
rice ShB management.
Although several advantages have been reported with the use of microbial
inoculants in rice, variability in effectiveness of field performance remains a con-
straint. To overcome this, comprehensive basic research is essential in the areas
of selection of microbial agents that focus on identifying strains that occupy the
same ecological niche with that of pathogens such as roots, the phylloplane, and
vascular systems. Application of novel techniques such as PCR, RFLP, and RAPD
for rapid identification of bacterial strains with desirable traits like biocontrol and
growth-promoting mechanisms are therefore necessary. Integrating these basic
research concepts with studies on greenhouse and field studies are therefore essen-
tial before devising IDM approaches for ShB management in rice. The PGPR that
are identified in these respects should be maintained as important genetic resource,
which will be useful for future studies that form an alternate to the presently
available chemical control of ShB.
Acknowledgments The primary author is thankful to the authorities of Acharya N G Ranga
Agricultural University, India for granting sabbatical to pursue his Ph.D. program at Auburn
University, USA. The authors are thankful to the Associate Director of Research, A. P. Rice
Research Institute, India for extending help in carrying out greenhouse and field studies. The
support of Rice Research Station, LSU AgCenter, USA in providing the seed material and
pathogen for our investigations, and of Becker Underwood, USA in providing the Integral
formulation is highly appreciated.
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