Chapter 5 蛋白质组学

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Chapter 5 蛋白质组学. 一、概述. 1 、什么是蛋白质组?. 2 、. 二、常规蛋白质组学研究技术. 双向电泳技术、计算机图像分析与大规模数据处理技术以及质谱技术被称为蛋白质组研究的三大基本支撑技术。蛋白质组研究的技术路线如下图:. 样品 细胞、组织、体液. 直接 1. 继续处理 2. 电转印到膜上. 图象分析,数据处理. 双向电泳. 继续处理 3. 胶上原位酶切. 2. 3. 肽混合物. Edman 降解. 氨基酸分析. MALDI/TOF/MS. N 端序列. 氨基酸组成. PSD/MALDI/ TOF/MS. - PowerPoint PPT Presentation

Transcript of Chapter 5 蛋白质组学

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  • EdmanNMALDI/TOF/MSESI/MS/MSPSD/MALDI/TOF/MS32

  • 11 SmithiesPoulik(1956)OFarrell1975()(SDSPAGE)

  • 2 SDS-PAGE20cm10010 00030cm x 40 cm(20 cm x 20 cm)3000.

  • FLA-5000-image: Sypro Ruby stained 2 D-gel, brain proteins

  • 21():

  • 2(change coupled devices,CCD)

  • Image Scanner 14-bit3.7OD 1D2D

  • 1000dpi(dot per inch)dpi300dpi8bits20cm x 20cm(Protean IIBio-Rad)tif 6Mb 300dpi300dpi256256

  • 3 melanie II&3&4PDQuest 6.1ImageMaster 2D Elite 3.10Phoretix 2DNonlinear Dynamics Ltd.Progenesis Decodon GmbHDelta2D: spot detection background subtraction (normalization) (spot matching)

  • 31 (m/z) 1886Goldstein194280fmol(10-15)amol(10-18).

  • 2002

  • 191719401959

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    1.2.3.1.2.3.4. 1. 2. 3.4.

  • 3(Matrix-assisted laser desorption/ionization, MALDI)Elaectrospray Ionization-ESI

  • MALDI ()(337nm)

  • 2) ESI N2

  • 4(triple-quadrupole analyzer)(ion trap analyzer)(quadruple-time of light analyzer)

  • (time of flightTOF) (mz)

  • MALDI-TOF-MS2(RETOF-MS)

  • 5MALDI-TOF/MS;ESI-Q-TOF/MS;MALDI-TOF-TOF/MS;ESI-MS/MS;HPLC-ESI-MS/MS.

  • MALDI-TOF/MS

  • HPLC-ESI-MS/MS

  • 6A: (Y axis)B: (m/z, X axis)C: (base peak)D: E: m/z.F: (centroidal peak) G: (gauss peak)

  • MALDI-TOF/MS

  • LC-ESI-MS/MS

  • 4(attribute parameter)(peptide mass fingerprintingPMF)MS/MS

  • 1PMF1PMF1993()PVDFPMF

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  • 4Fig of Ap73a

  • Result of Ap73a

  • 1,,() ,,:; ; ; ;

  • 2,,,

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    ,,,,,,Donohoe 151 ,;

  • ,,,Biplab ,(mammalian target of rapamycin ,mTOR) ,;mTOR ,,, mTOR ,

  • 2,,,,,,Graves ,1 (ALDH1) 2 (QR2),, QR2 ,

  • 3,,,,,, ,Charlwood ,,

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  • (2006) MALDI-TOFADP- (AGPase)UDP- A

  • (2002)40kD6.3 P40P40 Campo (2004)9 elF-5A

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  • IgA / /E-mail:[email protected]

  • IgIgA

  • IgAIgAIgSFIgAIgAIgA

  • 3.1 IgA

  • 3.2 1-DE/2-DE and 1-D/2-D Immunoblotting

  • Fig.1, 77 kDa, 75 kDa (Ap75) 64 kDa 3Ap75IgA-like) IgAAp75

  • 3.3 Ap75 1 MALDI-TOF/MS

  • 2ESI-MS/MS

  • Table 1: Matched amino acid sequences of Ap75 identified as L. vannamei hemocyanin by ESI-MS/MS analysis.

  • :Fig.24Table.1 MALDI-TOF/MS ESI-MS/MS Ap7575kDaIgA75kDa IgA

  • 3.4 IgA175kDaConserved domain NCBIBLAST IgA75kDaC252Ig-like domain 75kDaIg-like domainIgAIg-like domain

  • 2Ig-likeImmunoblotting

  • Fig5775kDaIgAIg-like domainIgSFIgIgSFIgSF

  • 3.5 41-DE1SDS-PAGE

  • 2MALDI-TOF

  • Fig.9 Table.2 4

  • 3.6 6

  • Fig.10 Table.34

  • 3.7 1 K12LPS

  • 2 k12

  • 3 OmpCOmpXK12OmpCOmpXOmpXOmpCOmpX

  • IgA1IgAIgA75kDa275kDaIgIg-like domain3IgIgSF4 6 5OmpX

  • 1. Zhang, Y.L., Wang, S.Y., Xu, A.L., Chen, J., Lin, B.K., Peng, X.X. Affinity proteomic approach for identification of an IgA-like protein in Litopenaeus vannamei and study on its agglutination characterization.J.Proteome Res. 2006, 5:815-821 (IF, 6.92)2., , , . . , 2006, 13(6):1006-10113., . . 4. , . .