Chapter 5 蛋白质组学
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Transcript of Chapter 5 蛋白质组学
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EdmanNMALDI/TOF/MSESI/MS/MSPSD/MALDI/TOF/MS32
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11 SmithiesPoulik(1956)OFarrell1975()(SDSPAGE)
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2 SDS-PAGE20cm10010 00030cm x 40 cm(20 cm x 20 cm)3000.
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FLA-5000-image: Sypro Ruby stained 2 D-gel, brain proteins
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21():
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2(change coupled devices,CCD)
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Image Scanner 14-bit3.7OD 1D2D
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1000dpi(dot per inch)dpi300dpi8bits20cm x 20cm(Protean IIBio-Rad)tif 6Mb 300dpi300dpi256256
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3 melanie II&3&4PDQuest 6.1ImageMaster 2D Elite 3.10Phoretix 2DNonlinear Dynamics Ltd.Progenesis Decodon GmbHDelta2D: spot detection background subtraction (normalization) (spot matching)
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31 (m/z) 1886Goldstein194280fmol(10-15)amol(10-18).
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2002
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191719401959
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1.2.3.1.2.3.4. 1. 2. 3.4.
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3(Matrix-assisted laser desorption/ionization, MALDI)Elaectrospray Ionization-ESI
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MALDI ()(337nm)
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2) ESI N2
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4(triple-quadrupole analyzer)(ion trap analyzer)(quadruple-time of light analyzer)
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(time of flightTOF) (mz)
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MALDI-TOF-MS2(RETOF-MS)
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5MALDI-TOF/MS;ESI-Q-TOF/MS;MALDI-TOF-TOF/MS;ESI-MS/MS;HPLC-ESI-MS/MS.
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MALDI-TOF/MS
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HPLC-ESI-MS/MS
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6A: (Y axis)B: (m/z, X axis)C: (base peak)D: E: m/z.F: (centroidal peak) G: (gauss peak)
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MALDI-TOF/MS
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LC-ESI-MS/MS
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4(attribute parameter)(peptide mass fingerprintingPMF)MS/MS
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1PMF1PMF1993()PVDFPMF
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4Fig of Ap73a
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Result of Ap73a
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1,,() ,,:; ; ; ;
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2,,,
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,,,,,,Donohoe 151 ,;
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,,,Biplab ,(mammalian target of rapamycin ,mTOR) ,;mTOR ,,, mTOR ,
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2,,,,,,Graves ,1 (ALDH1) 2 (QR2),, QR2 ,
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3,,,,,, ,Charlwood ,,
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(2006) MALDI-TOFADP- (AGPase)UDP- A
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(2002)40kD6.3 P40P40 Campo (2004)9 elF-5A
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IgA / /E-mail:[email protected]
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IgIgA
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IgAIgAIgSFIgAIgAIgA
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3.1 IgA
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3.2 1-DE/2-DE and 1-D/2-D Immunoblotting
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Fig.1, 77 kDa, 75 kDa (Ap75) 64 kDa 3Ap75IgA-like) IgAAp75
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3.3 Ap75 1 MALDI-TOF/MS
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2ESI-MS/MS
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Table 1: Matched amino acid sequences of Ap75 identified as L. vannamei hemocyanin by ESI-MS/MS analysis.
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:Fig.24Table.1 MALDI-TOF/MS ESI-MS/MS Ap7575kDaIgA75kDa IgA
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3.4 IgA175kDaConserved domain NCBIBLAST IgA75kDaC252Ig-like domain 75kDaIg-like domainIgAIg-like domain
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2Ig-likeImmunoblotting
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Fig5775kDaIgAIg-like domainIgSFIgIgSFIgSF
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3.5 41-DE1SDS-PAGE
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2MALDI-TOF
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Fig.9 Table.2 4
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3.6 6
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Fig.10 Table.34
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3.7 1 K12LPS
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2 k12
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3 OmpCOmpXK12OmpCOmpXOmpXOmpCOmpX
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IgA1IgAIgA75kDa275kDaIgIg-like domain3IgIgSF4 6 5OmpX
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1. Zhang, Y.L., Wang, S.Y., Xu, A.L., Chen, J., Lin, B.K., Peng, X.X. Affinity proteomic approach for identification of an IgA-like protein in Litopenaeus vannamei and study on its agglutination characterization.J.Proteome Res. 2006, 5:815-821 (IF, 6.92)2., , , . . , 2006, 13(6):1006-10113., . . 4. , . .