CARLOS HENRIQUE MARTINS DA SILVA , SIDNEI DE SOUZA , … · CARLOS HENRIQUE MARTINS DA SILVA1,...
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Implementation of computerized process and a management system at the Leishmania Collection of the Oswaldo Cruz Institute [Coleção de Leishmania do Instituto Oswaldo Cruz] – CLIOC CARLOS HENRIQUE MARTINS DA SILVA 1 , SIDNEI DE SOUZA 2 , ELISA CUPOLILLO 3 Laboratório de Pesquisa em Leishmaniose, Coleção de Leishmania do Instituto Oswaldo Cruz IOC/FIOCRUZ, Instituto Oswaldo Cruz/Fundação Oswaldo Cruz, Av. Brasil 4365, Manguinhos, Rio de Janeiro, RJ, Brasil 2 Centro de Referência em Informação Ambiental - CRIA CLIOC was created in 1980 with the support of the Oswaldo Cruz Institute, the Oswaldo Cruz Foundation and the World Health Organization. CLIOC is registered with the World Federation for Culture Collections (WFCC- WDCM 731). CLIOC is a partner of the demonstration project for a Global Biological Resource Centre Network. The ABC of BRCs: Authentication process for biological material Best practice in preservation Confirmed, validated information From culture collection to BRC Here we describe the computerization process adopted at CLIOC by using a management system CLIOC received more than 3,000 samples for deposit and/or characterization and today has more than 1,000 strains available, representing two sections, three subgenera and about 30 species. Crithidia Leptomonas Herpetomonas Blastocrithidia Leishmania Trypanosoma Phytomonas Endotrypanum Tripanossomatidae Protozoa Kinetoplastida Leishmania Viannia Subreino Ordem Família Gênero Seções Subgênero Complexo Espécie L. donovani L. tropica L. mexicana L. major L. braziliensis L. guyanensis L. donovani¹ L. archibaldi¹ L. infantum² L. chagasi² L. tropica L. killicki L. aetthiopica L. major 8 L. gerbilli 8 L. enrietti L. venezuelensis L. forattinii ** L. amazonensis³ L. garnhami³ L. mexicana 4 L. pifanoi 4 L. aristidesi L. braziliensis 5 L. peruviana 5 L. naiffi L. guyanensis 6,7 L. panamensis 6 L. shawi 7 L. lainsoni L. equatoriensis L. colombiensis L. hertigi L. deanei L. herrem Euleishmania Paraleishmania L. arabica L. turanica L. lindenbergi L. utingensis Sauroleishmania* L. agami L. adleri L. tarentolae L.hemidactyli L. ceramodactyli L. zmeevi L. hoogstraali L. gymnodactly CLIOC is now fully computerized through this system, and is able to register a wealth of information about the samples collected, including biological (e.g. growth curve, in vitro sensibility to antimonial, infectivity, virulence), biochemical (e.g. isoenzymatic pattern, proteomic), molecular (e.g. DNA sequences, gene expression), clinical and ecological traits. Services through online forms and the online catalog are available through its web site (http://clioc.ioc.fiocruz.br). Stock control and strain distribution management are also covered by Sicol. CLIOC is also partially georeferenced and connected to the speciesLink network, aiming to help predictive studies on Leishmania species and genotype dispersion. These strains came from many localities and different hosts, most from South America. A constant concern of this collection has been with epidemiological data associated with the strains collected. All deposited strains are submitted to biochemical identification. Biological and molecular characterizations have also been conducted through research projects, lead by CLIOC or by other research groups. Supported by Records from the Country of Origin Brazil - 2303 Algeria - 1 Argentina - 23 Azerbaijian - 2 Belize - 6 Bolivia - 71 China - 8 Colombia - 36 Costa Rica - 35 Egypt - 1 Ecuador - 111 Ethiopia - 6 France - 3 Greece - 2 Honduras - 18 India - 5 Iraq - 2 Israel - 16 Jordan - 3 Kenia - 3 Mexico - 14 Nicaragua - 17 not informed - 18 Panama - 21 Paraguay - 37 Peru - 16 Portugal - 4 Dominican Republic - 2 Senegal - 1 Sudan - 23 Sw eden - 1 Tunísia - 3 Turkmenistan - 1 USSR - 11 Uzbekistan - 1 Venezuela - 241
Transcript of CARLOS HENRIQUE MARTINS DA SILVA , SIDNEI DE SOUZA , … · CARLOS HENRIQUE MARTINS DA SILVA1,...
Implementation of computerized process and a management system at the
Leishmania Collection of the Oswaldo Cruz Institute [Coleção de Leishmania
do Instituto Oswaldo Cruz] – CLIOC
CARLOS HENRIQUE MARTINS DA SILVA1, SIDNEI DE SOUZA2, ELISA CUPOLILLO3
Laboratório de Pesquisa em Leishmaniose, Coleção de Leishmania do Instituto Oswaldo Cruz
IOC/FIOCRUZ, Instituto Oswaldo Cruz/Fundação Oswaldo Cruz, Av. Brasil 4365, Manguinhos, Rio de Janeiro, RJ, Brasil 2Centro de Referência em
Informação Ambiental - CRIA
CLIOC was created in 1980 with the support of the Oswaldo Cruz Institute, the Oswaldo Cruz Foundation and the World Health Organization.
CLIOC is registered with the World Federation for Culture Collections (WFCC- WDCM 731).
CLIOC is a partner of the demonstration project for a Global Biological Resource Centre Network.
The ABC of BRCs:
Authentication process for biological material
Best practice in preservation
Confirmed, validated information
From culture collection to BRC
Here we describe the computerization process adopted at CLIOC
by using a management system
CLIOC received more than 3,000 samples for deposit and/or characterization
and today has more than 1,000 strains available, representing two sections, three
subgenera and about 30 species.
Crithidia Leptomonas Herpetomonas Blastocrithidia Leishmania Trypanosoma Phytomonas Endotrypanum
Tripanossomatidae
Protozoa
Kinetoplastida
LeishmaniaViannia
Subreino
Ordem
Família
Gênero
Seções
Subgênero
Complexo
Espécie
L. donovani L. tropica L. mexicana L. major L. braziliensis L. guyanensis
L. donovani¹
L. archibaldi¹
L. infantum²
L. chagasi²
L. tropica
L. killicki
L. aetthiopica
L. major8
L. gerbilli8
L. enrietti
L. venezuelensis
L. forattinii **
L. amazonensis³
L. garnhami³
L. mexicana4
L. pifanoi4
L. aristidesi
L. braziliensis5
L. peruviana5
L. naiffiL. guyanensis6,7
L. panamensis6
L. shawi7
L. lainsoni
L. equatoriensis
L. colombiensis
L. hertigi
L. deanei
L. herrem
EuleishmaniaParaleishmania
L. arabica L. turanica L. lindenbergi L. utingensis
Sauroleishmania*
L. agami
L. adleri
L. tarentolae
L.hemidactyli
L. ceramodactyli
L. zmeevi
L. hoogstraali
L. gymnodactly
CLIOC is now fully computerized through
this system, and is able to register a wealth
of information about the samples collected,
including biological (e.g. growth curve, in
vitro sensibility to antimonial, infectivity,
virulence), biochemical (e.g. isoenzymatic
pattern, proteomic), molecular (e.g. DNA
sequences, gene expression), clinical and
ecological traits.
Services through online forms and the online
catalog are available through its web site
(http://clioc.ioc.fiocruz.br).
Stock control and strain distribution
management are also covered by
Sicol.
CLIOC is also partially
georeferenced and connected
to the speciesLink network,
aiming to help predictive
studies on Leishmania species
and genotype dispersion.
These strains came from many localities and different hosts, most from
South America.
A constant concern of this collection has been with
epidemiological data associated with the strains collected.
All deposited strains are submitted to
biochemical identification. Biological and
molecular characterizations have also been
conducted through research projects, lead
by CLIOC or by other research groups.
Supported by
Records from the Country of Origin
Brazil - 2303 Algeria - 1 Argentina - 23
Azerbaijian - 2 Belize - 6 Bolivia - 71
China - 8 Colombia - 36 Costa Rica - 35
Egypt - 1 Ecuador - 111 Ethiopia - 6
France - 3 Greece - 2 Honduras - 18
India - 5 Iraq - 2 Israel - 16
Jordan - 3 Kenia - 3 Mexico - 14
Nicaragua - 17 not informed - 18 Panama - 21
Paraguay - 37 Peru - 16 Portugal - 4
Dominican Republic - 2 Senegal - 1 Sudan - 23
Sw eden - 1 Tunísia - 3 Turkmenistan - 1
USSR - 11 Uzbekistan - 1 Venezuela - 241
