Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf ·...

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Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)

Transcript of Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf ·...

Page 1: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)

Page 2: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Macromolecules are Organic Compounds 

•  Compounds that contain carbon 

•  Hydrogen, oxygen, nitrogen, phosphorus and sulfur can also be found in organic compounds 

A lipid (a.k.a. fat)

Page 3: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Why Carbon? 

•  Carbon can form more bonds than any other element (4) 

•  This property allows carbon based molecules to be quite large and diverse 

Page 4: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

C C Single Bond (one pair of e- shared)

C C Double Bond (2 pairs of e- shared)

C C Triple Bond (3 pairs of e- shared)

Page 5: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Monomers and Polymers 

Organic compounds are made of monomers - individual subunits

Many monomers form polymers - larger molecules

Page 6: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Condensa?on and Hydrolysis Reac?ons 

•  Hydrolysis reac?ons break large molecules (polymers) into smaller ones by adding water 

•  Condensa<on, or dehydra<on synthesis builds large molecules from smaller ones by removing water 

       Two amino acids are shown at the top.  In condensa?on, the amino acids are combined into a dipep?de.  In hydrolysis, the dipep?de is split into two amino acids again. 

Page 7: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules
Page 8: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Monosaccharides (glucose, fructose, galactose) 

Page 9: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Condensa?on Reac?on (forming maltose – a disaccharide) 

Page 10: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Polysaccharides (starch vs. cellulose) 

Page 11: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Glycerol (monomer)

3 Fatty acids (monomers) Lipid (polymer)

Page 12: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Saturated and Unsaturated FaLy Acids 

Page 13: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Nucleic Acid (polymer) Nucleotides (monomers)

Page 14: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Nucleo?de 

Five carbon sugar

Nitrogen base Phosphate group

Page 15: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Two amino acids bonded together (dipeptide - polymer)

Amino acid (monomer) Amino acid (monomer)

Page 16: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Protein Structure 

•  Proteins are polymers made of amino acid monomers 

•  The shape of a protein determines its func?on 

•  The shape is determined by the order of amino acids in the protein 

p53 tumor suppressor protein 

Page 17: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Four Levels of Protein Structure 

•  Primary‐ order of a chain of amino acids 

•  Secondary – forma?on of hydrogen bonds between amino acids in the polypep?de chain 

•  Ter<ary – folding of whole polypep?de chain  

•  Quaternary – aLrac?ons between more than one polypep?de chain (results in the complete  protein) 

Page 18: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Enzymes 

•  Proteins that regulate chemical reac?ons in an organism 

Page 19: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Enzymes act as Catalysts 

Catalysts speed up chemical reactions without being used up or changed

during the reaction

Page 20: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

How do Enzymes Speed up Chemical Reac<ons? 

•  The energy required to get a chemical reac?on started is the ac#va#on energy 

•  Enzymes work by lowering the ac.va.on energy to speed up the reac?on 

Page 21: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Factors affec?ng the rate of a reac?on 

•  Amount of enzyme present 

•  Amount of substrate present 

•  Temperature and pH 

Page 22: Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA)jmazzabiology.com/bio2biochem2.pdf · 2010-11-03 · Carbohydrates Lipids (Fats) Proteins Nucleic Acids (DNA, RNA) Macromolecules

Enzyme Denatura?on Enzyme is shown in yellow Blue molecules are the substrate 

Heat or pH change 

Reac?on takes place normally 

No reac?on occurs (ac?ve site is damaged and substrate no longer fits)