Biodiversity Informatics: Sharing Knowledge Activities of the ETI Biodiversity Center Amsterdam,...

Biodiversity Informatics: Sharing Knowledge

Activities of theETI Biodiversity Center

Amsterdam, Campinas, Concepcion, London, Montevideo, St.Peterburg

Peter H. SchalkETI Biodiversity Center

University of [email protected]

A case example

1990 - 2002


Needs in the taxonomic and biodiversity community

Needs formulated by UNESCO, UNEP, CBD, GBIF:- taxonomic impediment: need for a new (ICT) momentum- growing demand for taxonomic/biodiversity information: more output - biodiversity documentation needs global collaboration (incl. Dev. Countr.)- scientific resources worldwide accessible (N-S balance)

An answer (1989):

- ETI Biodiversity Center set up by UNESCO in 1989- located at the University of Amsterdam with support of Dutch Government- an R&D organization by and for taxonomists & biodiversity researchers- new mechanism to document the earth’s biological diversity- knowledge center for biodiversity informatics- not-for profit e-publishing organization to increase accessibility of info


The ETI Biodiversity Center is a NGO in operational relations with UNESCO, dedicated to the production of scientific and educational computer-based materials for the preservation and worldwide dissemination of knowledge concerning the world’s plants, animals and other organisms. Its mission is to improve quality, quantity and accessibility of crucial taxonomic and biodiversity information.

ETI acts as a commonly shared gateway between knowledge providers (taxonomists, ecologists, biodiversity specialists) and a broad range of user communities: science, education, policy, eco-management, society (e.g. awareness).

It facilitates an interactive process of data sharing and compilation between specialists in all regions of the world and stimulates an information flow from academia to society.

Mission


• to develop software tools for taxonomists and biodiversity researchers, to store, manage, exchange, compile and disseminate their knowledge (Linnaeus II, taxonomic databases, ‘wrapping’ tools, webpublishing tools).

• to stimulate and support international human resource networks of specialists, who, by using common (‘standard’) software tools, build computer based knowledge systems (ETI’s taxonomy networks cover approx 1,500 specialists worldwide).

• to facilitate worldwide distribution of up-to-date taxonomic and biodiversity knowledge systems by offering an electronic publishing service (on CD-ROM, DVD-ROM for stand alone use) and through the Internet (on-line access to all information). Currently some 90 CD-ROMs were published (some 50,000 users) and information on 230,000 taxa is available on-line.

• to provide training in the use of biodiversity informatics (courses).

ETI’s principle tasks


ETI’s user community:

A. The taxonomists & biodiversity specialists. Knowledge Providers- developers of ICT instruments for data management and analysis- technical assistance to implement and use ICT tools- mechanism for making knowledge widely available (e-publishing)

B. The users of taxonomic and biodiversity information. ‘Society’- science (pure and applied)- education (various levels)- government: policy and management- commerce/industry- laymen/society in general

informationproviders

informationappliersE

T I

Information flowInformation flow

ICT tools/support Feedback/needs

User community A User community B


Assessing user needs for informatics appications is of prime importance.

- international workshop identifying requirements of the user community - develop desired tools / mechanisms in order of priorities- prototypes tested with selected user group for feedback from the field- once in use: continued adjustments of tools and mechanisms to standards- outreach: make services widely known and available

Maintaining the tool: keep your promises!

- Keep in touch: continuous feedback from largest possible user group - prioritize suggestions for improvements, step by step development- modular approach in upgrading tool/mechanism (replace parts, not whole)- warrant downward compatibility with older software versions (small steps)-warrant future availability and upgrades (commitment of developer)- provide help desk and training if needed

Lin

naeus

II


What did/does the provider/user require in ETI’s case?

-a reliable easy to use data entry and management system that supports building taxonomic monographs, capable of continuous extending/updating information content, capable of easily exchanging data with colleagues (through Internet) and between different platforms (Windows, Macintosh), flexible enough to cater for personal needs (customizing) and suitable as (electronic) publication medium.

- Furthermore: security (data protection, technical support), tool independence (import/export), freedom of publishing/disseminating when wanted (no copyright restrictions for data use).

- Also: a (subsidized, warranted) electronic publication service, off-line and on-line possibilities, speedy handling of finalized content (visible output).

- Acknowledgement and where possible some degree of financial return from resulting information products.

Lin

naeu

s II


Users needs for the resulting knowledge products (client side)

- Reliable easy to use systems- Off-line AND on-line output- Quality information of respectable source- Data rich (broad scope) information products- Broad application in different fields of use- Regular updates of information contents- Helpdesk for technical support- Affordable (low) prices


The result (part 1: off line tool):

A multifunctional interactive software package that combines taxonomic (multimedia) databases, hierarchies, literature database, glossary, method section, computer assisted identification tools and a geographic information system in one standard system. Import/export functions warrant communication with other database and information systems.

ID 3 pict.key

ID 1 d.key

ID 2GIS MapIt

TimeIt

GlossaryReferencesMultimedia

Species Database

Multimedia Higher Taxa Database

taxa list

Navigator & program info

USER

intro section

contrib. section

help function

Institute info

ID 2 IdIt key

free text search

Linnaeus II


ETI Partner program individual specialists (some 1,500)

ETI Network program grouped specialists (taxon/region)

ETI Member program institutional co-operation

ETI Branch program national/regional node (5)

ETI Biodiversity Center:Development ICT tools, technical supportHelpdesk, network co-ordinationPublication service, IPR,

CD-ROMs& Internet

Other users

SciencePublishers

The Mechanism

output

input

IPR

feed back

feed backroyalties information


GBIF EMBnet ETI branches sp2000

Validated taxon names

Synonyms, descriptions, illustrations, maps

On-lineLinks to other db’s

ETI’s WorldBiodiversityDatabase2002: 230,000Taxa on-line

Name findertool

00

Taxonomicviews & search

Taxonomistsdatabase

3,500specialists

GeographicSearch tool

ModularIdentification

tool

04020199

GIS

The result (part 2: on line tool): Linnaeus III

WWW.ETI.UVA.NL

03


Linnaeus IISoftware For data Management

Experts’ ownLinnaeus II WPWeb Site

Import & export

Linnaeus IIRun-Time

ETI’s WorldBiodiversity Database2002: 230,000 taxa on-line

UsersDb’s

The Internet

Linnaeus IISoftware For WebPublishing

Lin IIWebSite

Species2000

The result (part 3: user independence)

Linnaeus III

GBIF

Biodiversity Informatics: Sharing KnowledgeWhat was achieved?

- The Linnaeus II software is globaly accepted. The user community (ETI partner network, ±1,600) is still growing. Linnaeus II on-line ‘underway’

- The software is “stable”, flexible, cross platform, and allows for importing and exporting data thus making the user ‘independent’.

- Continuous feedback warrants timely ‘upgrading’ and extented functionality. Eg: a web publishing tool wil be added to Linnaeus II.

- Successful e-publication program: the output of ETI since 1994 is some 90 CD-ROMs titles. There is a warranty to keep them accessible (updates).

- The information is also (freely) available on-line (230,000 taxa in database part, remainder (keys, maps) to follow in 2002 and 2004).

- The author (knowledge provider) receives a royalty percentage from sales of the produced CD-ROMs.


Advantages of ETI approach

Fully user community drivenBroad ‘consensus’ for software package by using feedbackSteady growth of information contentHigh quality information by tapping directly into the sourceBroadly applicable of data (descriptions, hierarchies, keys, biogeography)Multimedia data: attractive and useful for a large ‘audience’Visible product output is important for contributor (citing)

Disadvantages:

Unstructured data delivery and thus incomplete filling of main databaseUncontrolled product output (volume, content)Relative slow increase in number of taxa due to complexity of dataPotential for overflow of organisation (increasing data influx)Need for funding to support R&D component

Biodiversity Informatics: Sharing Knowledge Activities of the ETI Biodiversity Center Amsterdam,...

Documents

Transcript of Biodiversity Informatics: Sharing Knowledge Activities of the ETI Biodiversity Center Amsterdam,...