Catalyse Biocatalyse, bioconversion et biotechnologie blanche
Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ......
Transcript of Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ......
![Page 1: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/1.jpg)
Bioconversion of Lignocellulosic Biomass into Bacterial Bio-Oils
1
Tyrone Wells, Jr.
Georgia Institute of Technology School of Chemistry & Biochemistry Institute of Paper Science Technology
“Trees into Fat”
![Page 2: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/2.jpg)
Potential Domestic Supplemental Fuel Platform
2
BIOCONVERSION
Using biological systems to convert abundant starting materials into more valuable compounds
Organism
Substrate Product Lignin Bio-oil
Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
Lignin Recovery boiler limited mills BIODIESEL
![Page 3: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/3.jpg)
3 Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
Fundamental Review of “Trees into Fat”
• Background of Bacterial Strains
• Rhodoccocus opacus
• Experimental Work
• Characterize How Cells Grow
• Results and Discussion
• Model Compounds Based on Lignin Units
• Kraft Lignin
![Page 4: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/4.jpg)
4
Rhodococcus opacus • Soil Bacteria
• Oleaginous
• >20% of cell dry weight in oil
• Two Strains
• DSM 1069
• PD 630
• “High affinity” towards the digestion of lignocellulosic aromatics
• β-ketoadipate pathway (β-KAP)
HSCoA
Glycerol
Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
(β-KAP)
![Page 5: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/5.jpg)
5
Experimental
• Model Compounds • Vanillic acid (G-type)
• p-Hydroxybenzoic acid (PHA/4-HBA) (H-type)
![Page 6: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/6.jpg)
Fundamental Overview of Tracking Cell Growth
• Verifying that the cells are growing well on lignin as sole carbon source • Decreasing Concentration of the Substrate
• Increasing Cell Dry Weight (CDW)
• Track the number of “healthy cells” (aka Colony Forming Units, CFU)
• Characterize the Generated Fats (Fatty Acid Methyl Esters, FAME)
• Rupture and Transesterification GC/MS
6
[substrate] [cell dry weight]
![Page 7: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/7.jpg)
7
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 8: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/8.jpg)
Lipid Composition Within Bio-Oil
8
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
palmitic acid
c-oleic acid
c-palmitoleate acid
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
![Page 9: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/9.jpg)
9
Sub
stra
te R
esi
du
e (
Lign
in m
g/m
l)
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 10: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/10.jpg)
10
72 h 72 h
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61 Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
![Page 11: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/11.jpg)
11 Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61 Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
![Page 12: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/12.jpg)
12
TBA
palmitic acid
![Page 13: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/13.jpg)
Conclusions
• Oil-producing bacteria can metabolize aromatic biomass and produce bio-oil
• This process has potential as a supplemental energy platform
Current Accomplishments
• Successfully generated bacterial bio-oils from:
• Model compounds (G and H-type monolignol analogs)
• Low Mw Softwood Kraft lignin
Future Work
• Adapt the bacteria to higher Mw Kraft lignin
• Alternative lignocellulosic derivatives
13
![Page 14: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/14.jpg)
Trees into Fat
14
• Acknowledgement • Arthur Ragauskas
• Matyas Kosa
• DOE Biorefinery Project
![Page 15: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/15.jpg)
15
![Page 16: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/16.jpg)
16
![Page 17: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/17.jpg)
Review of Lignocellulosic Biomass • Cellulose
• Hardwood 40-44%
• Softwood 40-44%
• Hemicellulose • Hardwood 25-35%
• Softwood 20-32%
• Lignin • Hardwood 20-25%
• Softwood 25-35%
• Complex biomacromolecule
• Monolignols
• p-Hydroxyphenyl (H), Guaiacyl (G), Syringyl (S)
• 3D polyaromatic macromolecule
• Recalcitrant
• Significantly less applications
17 Horst H. Nimz, Uwe Schmitt, Eckart Schwab, Otto Wittmann, Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial Chemistry 2005, Wiley-VCH, Weinheim.
![Page 18: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/18.jpg)
18
Optimizing the Use of Lignin
• Lignin
• (>90%) Kraft lignin burnt as a non-optimized fuel
• Opportunity for recovery-boiler limited mills
• Alternative Uses of Lignin
• Lignin Biodiesel
• Bacterial treatment
• Sustainable supplemental fuel platform
Pu Y, Kosa M, Kalluri UC, Tuskan GA, Ragauskas AJ (2011) Challenges of the utilization of wood polymers: how can they be overcome? Appl Microbiol Biotechnol, 91:1525-1536
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
Areskogh, J. Li, G. Gellerstedt, G. Henriksson, Investigation of the molecular weight increase of commercial lignosulphonates by laccase catalysis, Biomacromol. 11 (2010) 904-910.
![Page 19: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/19.jpg)
19
• Fermentation Growth with PD 630
• Calculated via OD at 600 nm, 1 w/V%
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 20: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/20.jpg)
20
• Fermentation Growth with PD 630
• Calculated via OD at 600 nm, 1 w/V%, 0.5 w/V%
PD 630 - OD [600]
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
0 20 40 60 80 100 120 140 160 180
hours
OD
[60
0]
Glucose PHA VanA UE Gluc-0.5 VanA-0.5 UE-0.5
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 21: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/21.jpg)
21
• Fermentation Growth with DSM 1069
• Calculated via OD at 600 nm, 1 w/V%
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 22: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/22.jpg)
22
• Fermentation Growth with DSM 1069
• Calculated via OD at 600 nm, 1 w/V%, 0.5 w/V%
DSM 1069 - OD [600]
0.0
0.5
1.0
1.5
2.0
2.5
3.0
0 50 100 150 200 250 300
hours
OD
[60
0]
Glucose PHA VanA UE Gluc-0.5 VanA-0.5 UE-0.5
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 23: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/23.jpg)
23
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 24: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/24.jpg)
24
palmitic acid
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 25: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/25.jpg)
Lipid Composition Within Bio-Oil
25
Comparison of FAME compositions at maximum specific yields and
productivities
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
DSM
1069-Glu-
12
DSM
1069-4-
HBA-12
DSM
1069-
VanA-24
PD630-
Glu-12
PD630-4-
HBA-36
PD630-
VanA-48
strain-substrate-time [h] till maximum productivity
(and yield)
FA
ME
linoleate
c-oleate
10-me-stearate
stearate
c-heptadecenoate
10-me-heptadecanoate
heptadecanoate
t-palmitoleate
c-palmitoleate
palmitate
pentadecanoate
myristate
palmitic acid
c-oleic acid
c-palmitoleate acid
linoleic acid
stearic acid
myristate acid
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 26: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/26.jpg)
26
The β-KAP
Protocatechuate β -Carboxymuconate β -Ketoadipate
β –Ketoadipate enol-lactone
γ -Carboxymuconolactone
Protocatechuate 3,4-dioxygenase
β-carboxy-cis,cis-muconate lactonizing
enzyme
γ -Carboxymuconolactone decarboxylase
enol-lactone hydrolase
1 2 3 4
Precursory Compounds
Wells, T. and A.J. Ragauskas, Biotechnological opportunities with the beta-ketoadipate pathway. Trends in Biotechnology, 2012. 30(12): p. 627-637
R3
![Page 27: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/27.jpg)
27
![Page 28: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/28.jpg)
Experimental • Adaptation Process
• Cell proliferation (full media)
• Centrifugation
• Cell proliferation (minimal media + new carbon source)
• Lipid accumulation (reducing nitrogen content of minimal media)
28 Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61
![Page 29: Bioconversion of Lignocellulosic Biomass into Bacterial ......School of Chemistry & Biochemistry ... 2012. 30(12): p. 627-637 3 ... Franz Wolf "Wood" in Ullmann's Encyclopedia of Industrial](https://reader033.fdocuments.net/reader033/viewer/2022042103/5e807a00bae43b275f4c31f5/html5/thumbnails/29.jpg)
29
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29:53-61