B. Protein sequence alignment

1
B. Protein sequence alignment A. cDNA sequence alignment 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) 006-203-G11 (OSCAF1BL) J023025J17 (OsCAF1BS) C. Sequence analysis of putative NLS and NES Supplementary Figure 5. Comparison between putative OsCAF1BL and OsCAF1BS. Nucleic acid (A) and amino acid sequence (B) comparison of putative of OsCAF1BL (006-203- G11) and OsCAF1BS (J023025J17). Identical residues are labeled in gray. (C) Schematic diagram of OsCAF1B proteins. The gray boxes indicate the CAF1 conserved regions. Putative nuclear localization signal (NLS) and nuclear export signal (NES) of OsCAF1B proteins are indicated as white and black blocks, respectively. Supplementary Figure 5.

description

Supplementary Figure 5. 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). 006-203-G11 (OSCAF1BL). - PowerPoint PPT Presentation

Transcript of B. Protein sequence alignment

Page 1: B. Protein sequence alignment

B. Protein sequence alignment

A. cDNA sequence alignment

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

006-203-G11 (OSCAF1BL)J023025J17 (OsCAF1BS)

C. Sequence analysis of putative NLS and NES

Supplementary Figure 5. Comparison between putative OsCAF1BL and OsCAF1BS. Nucleic acid (A) and amino acid sequence (B) comparison of putative of OsCAF1BL (006-203-G11) and OsCAF1BS (J023025J17). Identical residues are labeled in gray. (C) Schematic diagram of OsCAF1B proteins. The gray boxes indicate the CAF1 conserved regions. Putative nuclear localization signal (NLS) and nuclear export signal (NES) of OsCAF1B proteins are indicated as white and black blocks, respectively.

Supplementary Figure 5.

Protein Multiple Sequence Alignment Sarah Aerni CS374 December 7, 2006.

Protein Multiple Sequence Alignment Sarah Aerni CS374 December 7, 2006.

Distributed Many-to-Many Protein Sequence Alignment using … · 2020. 10. 1. · Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices Oguz Selvitopi 1, Saliya

Distributed Many-to-Many Protein Sequence Alignment using … · 2020. 10. 1. · Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices Oguz Selvitopi 1, Saliya

Pairwise sequence alignment. Pairwise alignment: protein sequences can be more informative than DNA protein is more informative (20 vs 4 characters);

Pairwise sequence alignment. Pairwise alignment: protein sequences can be more informative than DNA protein is more informative (20 vs 4 characters);

Protein Sequence Alignment

Protein Sequence Alignment

11 Ch6 multiple sequence alignment methods 1 Biologists produce high quality multiple sequence alignment by hand using knowledge of protein sequence evolution.

11 Ch6 multiple sequence alignment methods 1 Biologists produce high quality multiple sequence alignment by hand using knowledge of protein sequence evolution.

Sequence alig Sequence Alignment Pairwise alignment:-

Sequence alig Sequence Alignment Pairwise alignment:-

Conditional Random Fieldsmilos/courses/cs3750... · • DNA and protein sequence alignment • Sequence homolog searching in databases • Protein secondary structure prediction •

Conditional Random Fieldsmilos/courses/cs3750... · • DNA and protein sequence alignment • Sequence homolog searching in databases • Protein secondary structure prediction •

Hidden Markov Models for Protein Sequence Alignment

Hidden Markov Models for Protein Sequence Alignment

Multiple sequence alignment. Multiple sequence alignment: definition a collection of three or more protein (or nucleic acid) sequences that are partially.

Multiple sequence alignment. Multiple sequence alignment: definition a collection of three or more protein (or nucleic acid) sequences that are partially.

SEQUENCE ALIGNMENT - IMB Bioinformatics Groupbig.sci.am/jc/NGS_course/Alignment/sequence_alignment.pdf · SEQUENCE ALIGNMENT 1. INTRODUCTION Sequence alignment is not only the essential

SEQUENCE ALIGNMENT - IMB Bioinformatics Groupbig.sci.am/jc/NGS_course/Alignment/sequence_alignment.pdf · SEQUENCE ALIGNMENT 1. INTRODUCTION Sequence alignment is not only the essential

Practical Protein Sequence Alignment With Algebraic Dynamic Programming

Practical Protein Sequence Alignment With Algebraic Dynamic Programming

Sequence Alignment - unibo.it · Sequence Alignment. Sequence Alignment ... (optimal global alignment value) is maximum e.g. x = aaaacccccgggg y = cccgggaaccaacc. Why local alignment

Sequence Alignment - unibo.it · Sequence Alignment. Sequence Alignment ... (optimal global alignment value) is maximum e.g. x = aaaacccccgggg y = cccgggaaccaacc. Why local alignment

Sequence Alignmentbioinformatics.amc.nl/wp-content/uploads/gs-sequence... · 2018-03-05 · Sequence alignment Introduction sequence alignment Calculation of an alignment − exercises

Sequence Alignmentbioinformatics.amc.nl/wp-content/uploads/gs-sequence... · 2018-03-05 · Sequence alignment Introduction sequence alignment Calculation of an alignment − exercises

Protein Sequence Alignment Multiple Sequence Alignment

Protein Sequence Alignment Multiple Sequence Alignment

Sequence Alignment & Searchcompbio.ucdenver.edu/Hunter/intro-course/sequence-alignment_Verspoor.pdfPairwise Sequence Alignment • Sequence similarity depends on an alignment. •

Sequence Alignment & Searchcompbio.ucdenver.edu/Hunter/intro-course/sequence-alignment_Verspoor.pdfPairwise Sequence Alignment • Sequence similarity depends on an alignment. •

Protein Multiple Sequence Alignment

Protein Multiple Sequence Alignment

3D Visualization of Drugs-Protein Complexesxablab.ucsd.edu/15/15_ochem_icm_training.pdf · e.g. a=Sequence("ASDQWE") alignment , (i.e. pairwise or multiple sequence alignments, read

3D Visualization of Drugs-Protein Complexesxablab.ucsd.edu/15/15_ochem_icm_training.pdf · e.g. a=Sequence("ASDQWE") alignment , (i.e. pairwise or multiple sequence alignments, read

Pairwise Sequence Alignment (PSA) Why and How. Goals of sequence alignment From the alignment we can learn about: –The function of a new protein –New.

Pairwise Sequence Alignment (PSA) Why and How. Goals of sequence alignment From the alignment we can learn about: –The function of a new protein –New.

1 Sequence Alignment Profiles for Protein Secondary ...chuwei/paper/tcbb04.pdf · 1 Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure

1 Sequence Alignment Profiles for Protein Secondary ...chuwei/paper/tcbb04.pdf · 1 Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure

Simultaneous Alignment and Folding of Protein Sequences€¦ · protein sequences. By concurrently optimizing unaligned protein sequences for both sequence homology and structural

Simultaneous Alignment and Folding of Protein Sequences€¦ · protein sequences. By concurrently optimizing unaligned protein sequences for both sequence homology and structural