Avida “Reassignment of instruction sets using digital evolution.”
6
AVIDA “REASSIGNMENT OF INSTRUCTION SETS USING DIGITAL EVOLUTION.” Bianca Bullock Scott Harrison Alex Ropelewski Bienvenido Velez
description
Avida “Reassignment of instruction sets using digital evolution.”. Bianca Bullock Scott Harrison Alex Ropelewski Bienvenido Velez. Software Engineering. Original. Modifying the source code of the software How to control the code in other directions?. 1000 generations. - PowerPoint PPT Presentation
Transcript of Avida “Reassignment of instruction sets using digital evolution.”
AVIDA“REASSIGNMENT OF INSTRUCTION SETS USING DIGITAL EVOLUTION.”
Bianca BullockScott Harrison
Alex Ropelewski
Bienvenido Velez
SOFTWARE ENGINEERING Modifying the source code of the software How to control the code in other directions?
Original
1000 generations
Clone 1001-2000
S.P.1001-2000
CODON REASSINGMENT Which codes are we trying to modify? What is IOIO
AUG|GUG|UGA UAA UAG
Stop codons
Mukai, T., Hayashi, A., Iraha, F., Sato, A., Ohtake, K., Yokoyama, S., & Sakamoto, K. (2010). Codon reassignment in the Escherichia coli genetic code. Nucleic acids research, 38(22), 8188-8195.http://nar.oxfordjournals.org/content/38/22/8188.full
HOW DO WE MONITOR AND SUPERCOMPUTE AVIDA EVOLUTION?
Which AVIDA organism is better and why? What happened and when?
Ancestor organismOrganism fromgeneration 483
RUNNING AVIDA
Blacklight Writing a recursive script Parallel instead of serial processing of
multiple replicate Avida experiments
ALTERING AVIDA
What is the purpose of altering the Avida source code?
What is the purpose of identifying the phenotype of an organism?
Why are we minimizing runtime?
ACKNOWLEDGEMENTS
Pat Sudac (PSC) Alex Ropelewski (PSC) Pallavi Ishwad (PSC) Luis Vázquez-Quiñones (PSC) Hugh Nicholas (PSC) Scott Harrison (NCAT) Robert Newman (NCAT) Bienvenido Velez (UPRM)
