Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian...

13
Applications in the EDIT Platform for Cybertaxonomy Andreas Müller 1 , Andreas Kohlbecker 1 , Cherian Mathew 1 , Alexander Oppermann 1 , Patrick Plitzner 1 , Katja Luther 1 1 Botanic Garden and Botanical Museum Berlin-Dahlem, Department of Research and Biodiversity Informatics

description

{Information Broker } DwC-A ABCD SDD External services CSV Custom imports Specimens & Observations Descriptive data Darwin Core Archive Import / Export REST Services Integrity Check ( Validation ) OAI-PMH Harvesting

Transcript of Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian...

Page 1: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

Applications in the EDIT Platform for Cybertaxonomy

Andreas Müller1, Andreas Kohlbecker1, Cherian Mathew1, Alexander Oppermann1, Patrick Plitzner1, Katja Luther1

1Botanic Garden and Botanical Museum Berlin-Dahlem, Department of Research and Biodiversity Informatics

Page 2: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

Biodiversity related apps &services and generic tools

EDIT Platform related applications

CDM based applications

CDM ServerCDM StoreCommon Data

Model

{Architecture}

Page 3: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Information Broker}

DwC-A

ABCD

SDD

External services

CSV

Custom imports

Specimens & Observations

Descriptive data

Darwin Core Archive

Import / Export

RE

ST

Ser

vice

s

Integrity Check( Validation )

OA

I-PM

H

Harvestin

g

Page 4: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Classifications}

• Multiple classifications• Reuse

• Names• Taxon Concepts

• Concept Relationships

Page 5: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Synonymy & Nomenclature}• Freetext & Form based

• Homotypic groups

Page 6: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Specimens & Derivations}

• Flat Structure• Derivation Trees• Field Gathering• Specimen• Tissue Sample • DNA Sample • Sequence• Images, Scans, Multimed.• Duplicates

Page 7: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Keys}

• Single Access Keys• Multi Access Keys:

External

Page 8: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Vocabularies &

Terms}

• Extendable• User defined• Hierarchical• Multi

Language Support

Page 9: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Factual & Descriptive Data}

• Dynamic typing

• SDD compatibel

• Data provenance

Page 10: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Media}

• Media support• Not a media

server

Page 11: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Configurability}• Highly configurable• Preferences (Editor)• Dataportal settings

Page 12: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Summary}Service oriented architecture (SOA)Support for existing standards (import & export)Scope: Scientific work

Data provencanceComplexity where needed

Generic:ConfigurabilityChecklistsFlorasMonographsInformation Broker

Page 13: Applications in the EDIT Platform for Cybertaxonomy Andreas Mller 1, Andreas Kohlbecker 1, Cherian Mathew 1, Alexander Oppermann 1, Patrick Plitzner 1,

{Last but not least}

Thanks !