Application of selective breeding to oyster restoration: A ... · Photo by L. Degremont Two...
Transcript of Application of selective breeding to oyster restoration: A ... · Photo by L. Degremont Two...
Application of selective breeding to oyster restoration: A unique strategy of genetic “rehabilitation”
in the Chesapeake Bay
S. K. Allen Jr. and L. DegremontAquaculture Genetics and Breeding Technology Center
Virginia Institute of Marine Science
Photo by L. DegremontDo n
ot dis
semina
te with
out a
uthor
autho
rizati
on
Application of selective breeding to oyster restoration: A unique strategy of genetic “rehabilitation”
in the Chesapeake Bay
• desperate
• foolproof
• foolhardy
• hijacked
• default
Photo by L. DegremontDo n
ot dis
semina
te with
out a
uthor
autho
rizati
on
Forces of selection onChesapeake Bay oyster populations
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Fisheries selectionFisheries selection
Genetic rehabilitation?Genetic rehabilitation?
Natural selectionNatural selection
MSX Dermo
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
1892 survey of most productive oyster
grounds in Virginia
Yield of oysters from the Bay, nearly 8
million bushels/ year
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
Age class structure
Fecundity
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Natural selectionNatural selection
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
Age class structure
Fecundity
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Natural selectionNatural selection
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
Age class structure
Fecundity
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Fisheries selectionFisheries selection
barriers to gene flow?
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
Age class structure
Fecundity
fish out
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Fisheries selectionFisheries selection
barriers to gene flow?
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
Age class structure
Fecundity
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Fisheries selectionFisheries selection
barriers to gene flow?
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Baylor Survey: oyster groundsBaylor Survey: oyster grounds
fish out
Fisheries selectionFisheries selection
retain
resistance
Artificial selectionArtificial selection
0
1000
2000
3000
4000
5000
6000
7000
8000
1880
1885
1890
1895
1900
1905
1910
1915
1920
1925
1930
1935
1940
1945
1951
1956
1961
1966
1971
1976
1981
1986
1991
1996
2001
2007
2012
Genetic Genetic
rehabilitation?rehabilitation?
barriers to gene flow?
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Recommendations: Release / genetic rehabilitation strategy
• Limit release to restricted embayments
• Assess release strategies with use of
molecular markers
• Use multiple releases in one system
• Use more than one system
• Use multiple stocks among systems
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Application of selective breeding to oyster restoration: A unique strategy of genetic “rehabilitation”
in the Chesapeake Bay
the hijacking
Photo by L. DegremontDo n
ot dis
semina
te with
out a
uthor
autho
rizati
on
XB line
DBY line
tetraploid
6th generation DBY line
two years old
80% survival
10x increase in seed orders
4XDXB x CDBY: triploid DR aquaculture strain
Do not
disse
minate
withou
t auth
or au
thoriz
ation
RESTORATION vs. AQUACULTURERESTORATION vs. AQUACULTURE
base population
aquaculture and domestication
diminished diversity
“wild-type” genotypes
natural populations
maintain genetic variation
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Photo by L. Degremont
Two complementary approaches to selection for disease resistance using C. virginica
Line (variety) development
Family selection
Do not
disse
minate
withou
t auth
or au
thoriz
ation
9 lines
7 replicates
4 sites
Line (variety) development
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Kinsale
York River
WachapreagueChesapeake
Bay
Atlantic
Ocean
Lynnhaven
Line (variety) development
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Kinsale
0
5
10
15
20
YOBOY
04
CDBY
04
AXB 04 CAMX
04
ZDMO
04
MBC 04 XDBLA
04
ZDXB
04
YLGT
04
(%)
Mo
rtali
ty
York River
0
10
20
30
40
50
YOBOY
04
AXB 04 YLGT
04
CAMX
04
XDBLA
04
CDBY
04
MBC 04 ZDXB
04
ZDMO
04
(%) M
ort
ality
Broad bay
0
10
20
30
YOBOY
04
AXB 04 MBC 04 ZDXB
04
CDBY
04
ZDMO
04
CAMX
04
YLGT
04
XDBLA
04
(%)
Mo
rta
lity
Burton's Bay
0
10
20
30
40
50
60
70
80
ZDMO
04
XDBLA
04
YOBOY
04
MBC 04 ZDXB
04
YLGT
04
CAMX
04
CDBY
04
AXB 04
(%)
Mo
rtality
Line (variety) development
~10 ppt ~18 ppt
~28 ppt ~32 ppt
Do not
disse
minate
withou
t auth
or au
thoriz
ation
>1600 replicates of 200 oysters each
>300,000 single oysters
50 families/ year
8 replicates
2 sites
Family selection
Do not
disse
minate
withou
t auth
or au
thoriz
ation
MODUS OPERANDI: Disease resistant varieties
VIMS hatchery
also hold brood stock
for distribution
commercial
hatchery
lines and families for
field tests, selection
lines
families
oyster restoration
commercial aquaculture
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Disease resistant varieties on restored reefs
Restoration hijacked the aquaculture lines
Do not
disse
minate
withou
t auth
or au
thoriz
ation
IDEAL vs. REALITYIDEAL vs. REALITY
base population
“wild-type” genotypes
natural populations
maintain genetic variation
wild stocks
mixture of DR strains
locally adapted
all the above
Do not
disse
minate
withou
t auth
or au
thoriz
ation
Thanks to Tommy Leggett for pants
Photo by L. DegremontDo n
ot dis
semina
te with
out a
uthor
autho
rizati
on