agINFRA - Elements for an Information Infrastructure in Agricultural Research and Innovation
agINFRA Agricultural Ontology Workshop Presentation
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Transcript of agINFRA Agricultural Ontology Workshop Presentation
Presentations by Johannes Keizer is licensed under a Creative Commons Attribution-
NonCommercial-ShareAlike 3.0 Unported License.
Dr. Johannes KeizerOffice of Knowledge Exchange, Research and Extension
Food and Agriculture Organization of the UN
agINFRA – a multilingual Infrastructure
for Information on Agricultural
Innovation
Agricultural Ontology Service workshop 2012, Bangkok, February 9
“... FAO’s principle task is to work to
ensure that the world’s knowledge
of food and agriculture is available
to those who need it when they need
it and in a form which they can
access and use ...”
johannes keizerhttp://aims.fao.org
This Talk
Agricultural Innovation will be a key issue to combat hunger and poverty
in the world in the next years,
Access to information is one of the key issues for Agricultural
Innovation.
Information on fundamental research, applied research, technologies
and good practices is growing exponentially.
The traditional channels to access this information have become
insufficient to guarantee access.
Multilinguality has become a bigger issue as ever before.
A linked open data infrastructure between plurilingual resources is
necessary.
A key element of such an infrastructure are linked multilingual
vocabularies.
The EC FP 7 granted project agINFRA is working to make such
vocabularies globally available and to provide tools for creating a linked
open data environment.
johannes keizerhttp://aims.fao.org
Territory size shows proportion of scientific papers
published in 2001 by authors living there. Copyright SASI Group (University of Sheffield) and Mark Newman (University of Michigan)
Today……
johannes keizerhttp://aims.fao.org
Distributed Data Sets
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
johannes keizerhttp://aims.fao.org
Distributed Data Sets
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
? ?
How to make value added services?
johannes keizerhttp://aims.fao.org
Distributed Data Sets
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
How to infere knowledge?
johannes keizerhttp://aims.fao.org
Distributed Data Sets
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
How can I get in real time all the specimen data on useful insects
from all people making research on this on my desktop? How can
I share in real time my data with other colleagues working on that.
How to organize collaboration?
johannes keizerhttp://aims.fao.org
How to get from here…
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
johannes keizerhttp://aims.fao.org
…to
• stats
• gene banks
• gis data
• blogs,
• journals
• open archives
• raw data
• technologies
• learning objects
• ………..
johannes keizerhttp://aims.fao.org
RINGroutemap to
information nodes
and gateways
Data Production
Tools
LOD
enabled software
VocServervocabulary server
concepts and entities
triples
LOD
Generatortriplifier,
concept and entity
identifier
Data Rendering
ToolsWebservices + APIs
to triple stores
Cloud
storage for RDF
triples
agINFRA – our projects
johannes keizerhttp://aims.fao.org
The VocBench
VocServervocabulary server
concepts and entities
triples
johannes keizerhttp://aims.fao.org
RING - Charts and numbers
http://ring.ciard.net
RINGroutemap to
information nodes
and gateways
johannes keizerhttp://aims.fao.org
RING RDF store
SPARQL engine
RING website
INPUT
Feeds
From owners of
information services
OUTPUT
To other systems
- Adjusted metadata model- Fine-tuning of vocabularies
- Agreed standard URIs
Better metadata collection Custom feed for Grid servers
To the Grid
for other components
on the Grid
RESTful web services
Requirements from other systems
GridCrawl
Metadata about AgInfra services and components AgInfra services outside
the Grid
Current Envisaged Other AgInfra components
RINGroutemap to
information
nodes and
gateways
g
johannes keizerhttp://aims.fao.org
Subject
LODE - BD
concept
Data Production
Tools
LOD
enabled software
http://aims.fao.org/lode/bd
johannes keizerhttp://aims.fao.org
OAI-PMH
Drupal platform and database
Simple DC and Agris AP
Feeds, XML
To other systems
AgriDrupal features
[content types, taxonomies, views, modules]
Import
Importers
RSS, Agris AP, FOAF,
AgEvent
AgriDrupal content model
RSS, Agris AP
Drupal “Distribution
profile”mechanism
Downloaded and installedon a LAMPP server
Deployed in a multi-siteDrupal hosting cloud
OR
Drupal Aegir multi-site app
RDF
LODE-BD;
SPARQL
engine
Other formats for
partners servicesOther importers:
XML, CSV, XLS
AgInfra services
Providers with legacy data
AgInfra data providers in need of an information management tool
Providers with no hosting capacities
Current Envisaged Other AgInfra components
Adjusted content model
Requirements from other systems
Data Production
Tools
LOD
enabled software
johannes keizerhttp://aims.fao.org
AgriVIVO
e-agriculture community
AIMS
community
CG Map
GFAR
databases
FAO Knowledge CaféIAALD community
YPARD
National
database
of experts
AGRIS
PublicationsLibrary of
Congres
s
CABI …
People
Name: ……
Affiliation: ….
Job title: …..
Expertise: …
Country: …
…
Profile
Classifications:
agriculture-specific
topics / subject areas:
terms from
Agrovoc, NALT, CABT…
OrganizationsProjects
AgriVIVO will only store pointers (URIs) to and relations
between:
johannes keizerhttp://aims.fao.org
LOD Generator
LOD
Generatortriplifier,
concept and entity
identifier
johannes keizerhttp://aims.fao.org
More during the workshop!
Celli et al: OpenAGRIS: using bibliographical
data for linking into the agricultural
knowledge web
Lim et al: Multilinguality in AGROVOC
Concept Scheme: Challenges and
Experiences
Lim et al: Agricultural Linked Open Data
Credits: John Ferreira, Imma Subirats, Yves Jaques, Valeria Pesce, Fabrizio
Celli, Ahsan Morshed, Caterina Caracciolo, Dickson Lukose, Gudrun
Johannsen, Stefano Anibaldi, Armando Stellato, Tom Baker and many others
http://www.ciard.net
http://ring.ciard.net
http://aims.fao.org
http://agris.fao.org
..and more