Abstracted literature on Mediterranean biodiversity since 10 years Annabelle Amm Post-doc BioDivMex...

Abstracted literature on Mediterranean

biodiversity since 10 years

Annabelle Amm

Post-doc BioDivMexIMEP, DFCVCNRS

1

Context

Mediterranean basin

2

Threats

Climate changeAnthropic pressure

Hotspot of biodiversity

Context

Mediterranean basin

Synthesis on Mediterranean biodiversity research in terms of:

2?Ecosystems

Countries

Collaborations

Taxa

Threats

Climate changeAnthropic pressure

Hotspot of biodiversity

Abstracted literature since 10 years

Synthesis of BioDivMex workshop

Strengths, needs and locks of Mediterranean biodiversity research

Method

1245 references (Only Mediterranean

basin)

Reference management

software (EndNote)

Extract information in a database

Authors, Years, Nb of authors, Title, Name review, Research laboratory, Nb of laboratories, Countries, Key words, Fieldwork countries, Ecosystem, Taxon

Fields

Min year: 2001

Max year: 2011

Mediterranean biodiversity

3

Articles per year

Results

Articles per country

Collaborations

Ecosystems

Taxa

Journals

33 27 47 65 81

113

127 18

1 196 211

213

R² = 0,9642

0

50

100

150

200

250

2001

2002

2003

2004

2005

2006

2007

2008

2009

2010

2011

Num

ber o

f pap

ers

Year

ResultsArticles per year

4

33 27 47 65 81

113

127 18

1 196 211

213

R² = 0,9642

0

50

100

150

200

250

2001

2002

2003

2004

2005

2006

2007

2008

2009

2010

2011

Num

ber o

f pap

ers

Year

ResultsArticles per year

Papers dealing with Mediterranean biodiversity are in continuous increase since 10 years

Growing interest for Mediterranean biodiversity and biological conservation

If this trend is followed, 310 articles should be published in 2015

4

Results

Articles per year


Collaborations

Ecosystems

Taxa

Journals

ResultsArticles per country

84%

6% 10%

0102030405060708090

Nor

th-M

edite

rran

ean

coun

trie

s

Sout

h-M

edite

rran

ean

coun

trie

s

Oth

er c

ount

ries

Perc

enta

ge

Discrepancy between South and North-Mediterranean countries

5


84%

6% 10%

0102030405060708090

Nor

th-M

edite

rran

ean

coun

trie

s

Sout

h-M

edite

rran

ean

coun

trie

s

Oth

er c

ount

ries

Perc

enta

ge

North-Mediterranean countries

3 4

42

7 61 2

16

01020304050

Coun

ts

South-Mediterranean countries

Discrepancy between South and North-Mediterranean countries

Israel and Tunisia are the best South-Mediterranean represented countries

Spain + Italy: 54% of articles

5


Other countries as Germany (24 articles) and England (27) also contribute to the literature

6


Limit of the approach: Only 1 article for Malta or Morocco

Other countries as Germany (24 articles) and England (27) also contribute to the literature

6

Results

Articles per year


Collaborations

Ecosystems

Taxa

Journals

ResultsCollaborations

0

5

10

15

20

25

30

35

1 2 3 4 5 6 7 8 9 ≥ 10

Perc

enta

ge

Laboratories nb

1060 research laboratories involved in Mediterranean biodiversity research

Mean number of authors per article: 4,33

7


0

5

10

15

20

25

30

35

1 2 3 4 5 6 7 8 9 ≥ 10

Perc

enta

ge

Laboratories nb

The majority of the abstracted articles involves 1 laboratory research (33%) or 2 lab. (33%) or 3 lab. (17,5%).

These modalities constitute 83.5 % of the literature. 7

1060 research laboratories involved in Mediterranean biodiversity research

Mean number of authors per article: 4,33


Articles are either international (Inter), inter-laboratory in the same country (IntraC) or intra-laboratory (Intra)

405 417 417

0

100

200

300

400

500

Inter Intra IntraC

Coun

ts

8

Inter IntraC Intra


International collaborations mostly implicate Mediterranean countries

405 417 417

0

100

200

300

400

500

Inter Intra IntraC

Coun

ts

8

Inter IntraC Intra

Articles are either international (Inter), inter-laboratory in the same country (IntraC) or intra-laboratory (Intra)

6

153

4

112130

0

50

100

150

200

interE_e interE_m interG_g interG_m interM_m

Coun

tsInternational

Europe Europe + Mediterranean

World World + Mediterranean

Mediterranean

ResultsIntra-Mediterranean

collaborations

60%

40%

Main collaborations are: • Spain-France (25)

• France-Italy (12)

• Italy-Spain (10)

• Spain-Portugal (11)

• Tunisia-France (10)

More North-North collaborations than North-South

No collaboration South-South

9

Results

Articles per year


Collaborations

Ecosystems

Taxa

Journals

ResultsJournals

382 journals inventoried

10 10 10 10 10 10 10 11 11 11 1114 14 15 17 18 18 18 20 22 23 23

2833

56

0

10

20

30

40

50

60

Acta

Bot

anic

a G

allic

a

Agric

ultu

re E

cosy

stem

s &

Env

ironm

ent

Chem

istr

y an

d Ec

olog

y

Jour

nal o

f App

lied

Ecol

ogy

Jour

nal o

f Nat

ural

His

tory

Med

iterr

anea

n M

arin

e Sc

ienc

e

Zoot

axa

Com

ptes

Ren

dus

Biol

ogie

s

Envi

ronm

enta

l Man

agem

ent

Land

scap

e an

d U

rban

Pla

nnin

g

Mol

ecul

ar P

hylo

gene

tics

and

Evol

ution

Div

ersi

ty a

nd D

istr

ibuti

ons

Estu

arin

e Co

asta

l and

She

lf Sc

ienc

e

Plan

t Bio

syst

ems

PLAN

T EC

OLO

GY

ACTA

OEC

OLO

GIC

A-IN

TERN

ATIO

NAL

…

Aqua

tic C

onse

rvati

on-M

arin

e an

d…

Mar

ine

Envi

ronm

enta

l Res

earc

h

Fore

st E

colo

gy a

nd M

anag

emen

t

Jour

nal o

f Bio

geog

raph

y

Mar

ine

Ecol

ogy-

Prog

ress

Ser

ies

Mar

ine

pollu

tion

bulle

tin

Hyd

robi

olog

ia

Biol

ogic

al C

onse

rvati

on

Biod

iver

sity

and

Con

serv

ation

Coun

ts

10

ResultsJournals

382 journals inventoried

10 10 10 10 10 10 10 11 11 11 1114 14 15 17 18 18 18 20 22 23 23

2833

56

0

10

20

30

40

50

60

Acta

Bot

anic

a G

allic

a

Agric

ultu

re E

cosy

stem

s &

Env

ironm

ent

Chem

istr

y an

d Ec

olog

y

Jour

nal o

f App

lied

Ecol

ogy

Jour

nal o

f Nat

ural

His

tory

Med

iterr

anea

n M

arin

e Sc

ienc

e

Zoot

axa

Com

ptes

Ren

dus

Biol

ogie

s

Envi

ronm

enta

l Man

agem

ent

Land

scap

e an

d U

rban

Pla

nnin

g

Mol

ecul

ar P

hylo

gene

tics

and

Evol

ution

Div

ersi

ty a

nd D

istr

ibuti

ons

Estu

arin

e Co

asta

l and

She

lf Sc

ienc

e

Plan

t Bio

syst

ems

PLAN

T EC

OLO

GY

ACTA

OEC

OLO

GIC

A-IN

TERN

ATIO

NAL

…

Aqua

tic C

onse

rvati

on-M

arin

e an

d…

Mar

ine

Envi

ronm

enta

l Res

earc

h

Fore

st E

colo

gy a

nd M

anag

emen

t

Jour

nal o

f Bio

geog

raph

y

Mar

ine

Ecol

ogy-

Prog

ress

Ser

ies

Mar

ine

pollu

tion

bulle

tin

Hyd

robi

olog

ia

Biol

ogic

al C

onse

rvati

on

Biod

iver

sity

and

Con

serv

ation

Coun

ts

Biological conservation is a main problematic for Mediterranean biodiversity research

10

5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 7 7 7 8 8 8 8 8 9 9 9 10 10 11 11 1316 17 17 19

24

46

05

101520253035404550

Agro

fore

stry

Sys

tem

s

Ecol

ogy

Lett

ers

Envi

ronm

enta

l Pol

lutio

n

Fres

eniu

s Env

ironm

enta

l…

Isra

el Jo

urna

l of E

colo

gy &

…

Jour

nal f

or N

atur

e Co

nser

vatio

n

Jour

nal o

f Env

ironm

enta

l…

Myc

orrh

iza

Oec

olog

ia

Oik

os

Scie

nce

of th

e To

tal…

taxo

n

Zool

ogy

in th

e M

iddl

e Ea

st

Zoot

axa

Anna

ls of

Bot

any

Com

ptes

Ren

dus B

iolo

gies

Mol

ecul

ar E

colo

gy

Glo

bal E

colo

gy a

nd…

Jour

nal o

f Arid

Env

ironm

ents

Pala

eoge

ogra

phy…

Cons

erva

tion

Biol

ogy

Envi

ronm

enta

l Man

agem

ent

Isra

el Jo

urna

l of P

lant

Sci

ence

s

Land

scap

e ec

olog

y

Mol

ecul

ar P

hylo

gene

tics a

nd…

Appl

ied

Soil

Ecol

ogy

Jour

nal o

f App

lied

Ecol

ogy

Jour

nal o

f Veg

etati

on S

cien

ce

Acta

Bot

anic

a G

allic

a

Agric

ultu

re E

cosy

stem

s &…

Dive

rsity

and

Dis

trib

ution

s

Land

scap

e an

d U

rban

Pla

nnin

g

Plan

t Bio

syst

ems

Acta

oec

olog

ica-

inte

rnati

onal

…

Jour

nal o

f Bio

geog

raph

y

Plan

t eco

logy

Fore

st E

colo

gy a

nd…

Biol

ogic

al C

onse

rvati

on

Biod

iver

sity

and

Con

serv

ation

Coun

ts

ResultsJournals

Terrestrial

For terrestrial ecosystems, biodiversity and biological conservation are a main problematic

research

Basic ecological journals are not well represented

11

5 5 6 6 6 6 6 6 7 7 7 79 9 10

12

1517

19

22

0

5

10

15

20

25

Hel

gola

nd M

arin

e Re

sear

ch

Jour

nal o

f Nat

ural

His

tory

Bota

nica

mar

ina

Cybi

um

Jour

nal o

f cos

tal r

esea

rch

Jour

nal o

f Exp

erim

enta

l Mar

ine…

Mar

ine

Ecol

ogy-

an E

volu

tiona

ry…

Plos

One

Italia

n Jo

urna

l of Z

oolo

gy

Jour

nal o

f the

Mar

ine

Biol

ogic

al…

Mar

ine

Biol

ogy

Scie

ntia

Mar

ina

Aqua

tic C

onse

rvati

on-M

arin

e…

Med

iterr

anea

n M

arin

e Sc

ienc

e

Chem

istr

y an

d Ec

olog

y

Estu

arin

e Co

asta

l and

She

lf…

Hyd

robi

olog

ia

Mar

ine

Envi

ronm

enta

l Res

earc

h

Mar

ine

pollu

tion

bulle

tin

Mar

ine

Ecol

ogy-

Prog

ress

Ser

ies

Coun

ts

Marine

12

ResultsJournals

Journal specialized on marine ecologyFew basic ecological journals

Annabelle Amm

Voir avec Thierry, j'ai du mal à exprimer mon idée

5 5 6 6 6 6 6 6 7 7 7 79 9 10

12

1517

19

22

0

5

10

15

20

25

Hel

gola

nd M

arin

e Re

sear

ch

Jour

nal o

f Nat

ural

His

tory

Bota

nica

mar

ina

Cybi

um

Jour

nal o

f cos

tal r

esea

rch

Jour

nal o

f Exp

erim

enta

l Mar

ine…

Mar

ine

Ecol

ogy-

an E

volu

tiona

ry…

Plos

One

Italia

n Jo

urna

l of Z

oolo

gy

Jour

nal o

f the

Mar

ine

Biol

ogic

al…

Mar

ine

Biol

ogy

Scie

ntia

Mar

ina

Aqua

tic C

onse

rvati

on-M

arin

e…

Med

iterr

anea

n M

arin

e Sc

ienc

e

Chem

istr

y an

d Ec

olog

y

Estu

arin

e Co

asta

l and

She

lf…

Hyd

robi

olog

ia

Mar

ine

Envi

ronm

enta

l Res

earc

h

Mar

ine

pollu

tion

bulle

tin

Mar

ine

Ecol

ogy-

Prog

ress

Ser

ies

Coun

ts

Marine

5 56

89

12

0

2

4

6

8

10

12

14

Biol

ogic

al C

onse

rvati

on

Com

ptes

Ren

dus

Biol

ogie

s

Biod

iver

sity

and

Con

serv

ation

Fres

hwat

er B

iolo

gy

Aqua

tic C

onse

rvati

on-M

arin

ean

d Fr

eshw

ater

Eco

syst

ems

Hyd

robi

olog

ia

Coun

ts

Freshwater

Journal specialized on marine ecologyFew basic ecological journals

Journal specialized in aquatic ecologyFew basic ecological journals

12

ResultsJournals

Annabelle Amm

Voir avec Thierry, j'ai du mal à exprimer mon idée

Articles per year

Results


Collaborations

Ecosystems

Taxa

Journals

ResultsEcosystems

Terrestrial: 60% of the articles

Marin: 30%

Freshwater: 10%

737

369

135

0

100

200

300

400

500

600

700

800

Terrestrial Marine Freshwater

Coun

ts

13

ResultsEcosystems

Soil constitutes 9% of the articles

Terrestrial

Forest ecosystem is well represented (18% of the articles –terrestrial ecosystems-)

Agricultural system constitutes 13% of the articles

14

288

33 322 4 8 1

0

50

100

150

200

250

300

350

Mar

ine

Dee

p-m

arin

e

Coas

tal l

agoo

n

Estu

arin

e

Mar

ine

cave

Mar

ine

farm

Mar

ine

harb

our

Coun

ts

ResultsEcosystems

Further analyses are necessary to better describe what “Marine ecosystem” mean

Marine

15

288

33 322 4 8 1

0

50

100

150

200

250

300

350

Mar

ine

Dee

p-m

arin

e

Coas

tal l

agoo

n

Estu

arin

e

Mar

ine

cave

Mar

ine

farm

Mar

ine

harb

our

Coun

ts

29

43

9

17 17

05

101520253035404550

Fres

hwat

er

Rive

r

Lake

Pond

s

Tem

pora

ry w

etla

nds

Coun

ts

ResultsEcosystems

Good representation of all the types of freshwater ecosystems

Marine Freshwa

ter

15

Further analyses are necessary to better describe what “Marine ecosystem” mean

288

33 322 4 8 1

0

50

100

150

200

250

300

350

Mar

ine

Dee

p-m

arin

e

Coas

tal l

agoo

n

Estu

arin

e

Mar

ine

cave

Mar

ine

farm

Mar

ine

harb

our

Coun

ts

ResultsEcosystems

Many ecosystems are represented (> 100)

Marine

15

29

43

9

17 17

05

101520253035404550

Fres

hwat

er

Rive

r

Lake

Pond

s

Tem

pora

ry w

etla

nds

Coun

ts

Good representation of all the types of freshwater ecosystems

FreshwaterFurther analyses are

necessary to better describe what “Marine ecosystem” mean

Articles per year

Results


Collaborations

Ecosystems

Taxa

Journals

ResultsTaxa

52% of the articles focus on Animals

638

235 61

421

28 28

0

100

200

300

400

500

600

700

Coun

ts

35% on Plants

13% on other taxa (fungi, bacteria etc…)

16

ResultsTaxa

Animals

Groups such as nematods, cnidaria, annelida are underrepresented (according to the number of species they include)

Many groups of Animalia kingdom are represented, particularly insects, fishes, mammals and birds

17

1721

16 16

1

52

3 2

12

35

113

30

77

97

28

64

712

43

4

1410

17 10

16 14

1 3 3

0

20

40

60

80

100

120

Coun

ts

ResultsTaxa

Insect

35

1

6

1

15

8

2

19

1 24

2

0

5

10

15

20

25

30

35

40

Coun

ts

AnimalsMany groups of Animalia kingdom are represented, particularly insects, fishes, mammals and birds

17

Insects are predominantly represented (15% of the articles), particularly Coleoptera

Elaphocera emarginata

Groups such as nematods, cnidaria, annelida are underrepresented (according to the number of species they include)

336

379

10

50100150200250300350400

Coun

ts

ResultsTaxa

Spermatophyta are predominantly represented (90% of the articles)

Plants

18

336

379

10

50100150200250300350400

Coun

ts

ResultsTaxa

2 2 1 24

1 2 1 1 1 1

79

16

2

30

6

0

5

10

15

20

25

30

35Co

unts

Spermatophyta are predominantly represented (90% of the articles)

Trees constitute 23% of the studied taxa

Quercus are well represented, particularly “cork oak” that present economical interest

Plants

18

Conclusion

19

Increase interest for Mediterranean biodiversity since 10 years

Conclusion

19


Discrepancy between South and North Mediterranean countries in terms of abstracted literature

Conclusion

19


Few Mediterranean countries collaborations (particularly South-South collaborations)


Conclusion

19




Main journals concern biological conservation

Conclusion





19

Terrestrial ecosystem are better described than aquatic ecosystems (marine + freshwater)

Conclusion



Terrestrial ecosystem are better described than aquatic ecosystems (marine + freshwater)

Animals are better represented than plants; important representation of “visible” animals (e. g. mammals) 19



Perspectives

Contact research laboratories looking forward their activities on Mediterranean biodiversity research (thesis, non-abstracted literature)

Many articles are missing, few representation of some authors or countries

Better approach using ecosystem key word (e. g. Mediterranean soil)


Limit of the approach To complete…

Key words Institute

subscription to Web Of Knowledge

20

Strength, needs and locks on Mediterranean biodiversity

research?

Perspectives

Strength, needs and locks on Mediterranean biodiversity

research?

Many articles are missing, few representation of some authors or countries

Limit of the approach To complete…

Key words Institute

subscription to Web Of Knowledge

20

Contact research laboratories looking forward their activities on Mediterranean biodiversity research (thesis, non-abstracted literature)

Better approach using ecosystem key word (e. g. Mediterranean soil)


Special thanks to Nathalie Polvani and Françoise Fleury-Blanc who really helped us

to organize this workshop

Thanks for your attention

Photographic credits: Teddy Baumberger, Thierry Gauquelin, Pierre-Jean Dumas and unknown people from the web

Abstracted literature on Mediterranean biodiversity since 10 years Annabelle Amm Post-doc BioDivMex...

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Transcript of Abstracted literature on Mediterranean biodiversity since 10 years Annabelle Amm Post-doc BioDivMex...