A unique place - CIREScires.colorado.edu/jimenez-group/Field/DAURE-09/BSC_1st_Mtg.pdfLinux cluster...

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Earth Science Research at the Earth Science Research at the Barcelona Supercomputing Center Barcelona Supercomputing Center Dr. José M. Baldasano ([email protected]) Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) Earth Sciences Department. Barcelona, Spain Mars, 2009 – Barcelona, Spain A unique unique place place ………… …………

Transcript of A unique place - CIREScires.colorado.edu/jimenez-group/Field/DAURE-09/BSC_1st_Mtg.pdfLinux cluster...

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Earth Science Research at theEarth Science Research at theBarcelona Supercomputing CenterBarcelona Supercomputing Center

Dr. José M. Baldasano ([email protected])

Barcelona Supercomputing Center-Centro Nacional de Supercomputación(BSC-CNS)

Earth Sciences Department. Barcelona, Spain

Mars, 2009 – Barcelona, Spain

AA uniqueunique placeplace ……………………

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�� 10240 IBM 10240 IBM PowerPower PC 970MP PC 970MP processorsprocessorsat 2.3 at 2.3 GHzGHz (2560 JS21 blades).(2560 JS21 blades).�� 20 TB 20 TB Main Memory.Main Memory.�� 94,2194,21 TflopsTflops (peak performance).(peak performance).�� 280 + 90 TB 280 + 90 TB disk.disk.�� Interconnection networks:Interconnection networks:

�� MyrinetMyrinet�� GigabitGigabit

�� Linux cluster (Linux cluster (SuSeSuSe).).�� Diskless network support.Diskless network support.

MareNostrumMareNostrum

MareNostrumMareNostrum

�� MareNostrumMareNostrum’’ss evolutionevolution::

1199June 2007June 2007331313NovemberNovember 20072007

1155NovemberNovember 20062006331111June 2006June 20061188NovemberNovember 20052005

5544

WorldWorldPositionPosition

11June 2005June 200511NovemberNovember 20042004

EuropeEuropePositionPositionListList

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SpanishSpanish SupercomputingSupercomputingNetwork (RES)Network (RES)

MareNostrumProcessors: 10240 PowerPC 970 2.3 GHzMemory: 20 TbytesDisc: 280 + 90 TbytesNetworks: Myrinet, Gigabit, 10/100Operating System: Linux

CeSViMaProcessors: 2408 PowerPC 970 2.2 GHzMemory: 4.7 TbytesDisc: 63 + 47 TbytesNetworks: Myrinet, Gigabit, 10/100Operating System: Linux

IAC, UMA, UNICAN, UNIZAR, UVProcessors: 512 PowerPC 970 2.2 GHzMemory: 1 TbyteDisc: 14 + 10 TbytesNetworks: Myrinet, Gigabit, 10/100Operating System: Linux

The BSCThe BSC--IBMIBM MareIncognitoMareIncognito projectproject

�� 1010 PetaflopPetaflop research project research project (2010)(2010)

�� Port/develop applications to Port/develop applications to reduce timereduce time--toto--production once production once installedinstalled

�� Programming models Programming models

�� Tools for application Tools for application developmentdevelopmentand to support previous and to support previous evaluationsevaluations

�� Evaluate node architecture Evaluate node architecture

�� Evaluate interconnect optionsEvaluate interconnect options

Performance analysis andPrediction

Tools

Processorand node

Loadbalancing

Interconnect

Applicationdevelopment

an tuning

Fine-grainprogramming

models

Model andprototype

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Which countries joined PRACEWhich countries joined PRACE

Principal Partners

General Partners

tier1

tier0

GENCI

Earth Science Research at theEarth Science Research at theBarcelona Supercomputing CenterBarcelona Supercomputing Center

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CALIOPE:CALIOPE:Air Quality Air Quality

ForecastingForecastingSystemSystem

Resolution improved to 12 km for allEurope, 4 km for the Iberian peninsula,

and 1 km for hot spot regions withinMareNostrum Supercomputer

Enhancing spatial resolution Enhancing spatial resolution ––towards a new generation air towards a new generation air

quality modeling systemquality modeling system

High-resolution modeling

Precipitation

Water vapour

http://http://salam.upc.es/caliopesalam.upc.es/caliope

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Database information management

Biogenic emissions

� Land use map � Emission factors and biomass � Meteorological information (air temperature, solar radiation)

On road, ships and aircrafts traffic

� Roads (urban streets, roads, etc.), LTO cycles and ships routes � Hourly, weekly and monthly profiles � Distribution of the vehicles � Velocity by road type � Meteorological information (air temperature) � Type of combustibles

Industry and electric generation

� Location (point/area) � Production / electric generation � Emission factors – energetic intensity � Chimney height / diameter

Residential and commercial

� Density population map � Combustibles consume � Emission factors � Solvent use � Waste generation

Emission computation and speciation

Speciation

BVOCs NOx, VOCs, CO, SO2, particulate matter, CO2, CH4 and N2O

NOx, VOCs, CO, SO2, particulate matter, CO2, CH4 and N2O

NOx, VOCs, CO, SO2, particulate matter, CO2, CH4 and N2O

Management of emission data for air quality modelling

� Hourly aggregation of archives (4x4 km, 1x1 km grid size) � Height desaggregation (vertical layers) � Database resolution (1 - 4 km grid size) � Generation of netCDF emission files

Management of the emission information

� Visualization and analysis of the results � Management information tool

HERMES2004: HighHERMES2004: High--Elective Resolution Elective Resolution ModellingModelling Emission SystemEmission System((BaldasanoBaldasano et al 2008)et al 2008)

HERMES2004: Emissions for Madrid,HERMES2004: Emissions for Madrid,1 km, Primary Organic Aerosol 1 km, Primary Organic Aerosol (POA)(POA)

HERMES2004: Emissions for HERMES2004: Emissions for Catalonia, 1 km, Paraffin (PAR)Catalonia, 1 km, Paraffin (PAR)

Madrid

Barcelona

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Surface tropospheric ozone, 18-21 Jun 2007

Surface level PM2.5 sulfates, 19-21 Jun 2007

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http://www.bsc.es/projects/earthscience/AirQuality/sub_fc_val_gohttp://www.bsc.es/projects/earthscience/AirQuality/sub_fc_val_google.phpogle.php

1. Operational 1. Operational meteorologicalmeteorologicalvalidation: MSGvalidation: MSG

2. Operational 2. Operational meteorologicalmeteorologicalvalidation: RADARvalidation: RADAR

3. Operational air quality 3. Operational air quality validation: OMI NOvalidation: OMI NO22tropospheric columntropospheric column

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�� Workflow of a 48 h highWorkflow of a 48 h high--resolution simulation of resolution simulation of Europe at 12 km and Spain at 4 kmEurope at 12 km and Spain at 4 km

Computational requirements

Meteorology

Emissions

Chemistry

IMPACT OF THE EXTRATROPICAL STORM DELTA OVER THE CANARY ISLANDS IMPACT OF THE EXTRATROPICAL STORM DELTA OVER THE CANARY ISLANDS ONON2828--30 NOVEMBER 2005: SEVERE WINDSTORM EVENT30 NOVEMBER 2005: SEVERE WINDSTORM EVENT

On 28-29 November 2005 an extratropical storm affected Canary Islands causingsignificant damage related to high sustained wind and intense gusts over some of the islands. Delta was the 26th tropical storm of the 2005 Atlantic hurricane season.

The aim of this study is to describe the local effects of the flow that were observed over Canary Islands during the travel of the Delta storm near the region using high-resolutionmesoscale meteorological simulations. The role of the complex topography of the Canary Islands will be discussed with an experimental simulation without the topography of the islands.

20:0060.649.9Izaña21:4037.124.1Tenerife/Sur21:0036.615.9Sta. Cruz de Tenerife16:0019.48.3Tenerife/Los Rodeos16:0025.513.3La Gomera19:004628.9La Palma airport12:3016.58.5Tazacorte18:0032.718.7Hierro airport

Time UTC10 m wind gust (m/s)

10 m wind speed (m/s)

Station name

20:0060.649.9Izaña21:4037.124.1Tenerife/Sur21:0036.615.9Sta. Cruz de Tenerife16:0019.48.3Tenerife/Los Rodeos16:0025.513.3La Gomera19:004628.9La Palma airport12:3016.58.5Tazacorte18:0032.718.7Hierro airport

Time UTC10 m wind gust (m/s)

10 m wind speed (m/s)

Station name

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CanaryCanary IslandsIslands archipelagoarchipelago

The Canary Islands are located in the middle-east of the Atlantic Ocean in front of the southern coast of Morocco. They are the most distant archipelago of Spain constituted of seven islands of volcanic origin with very complex topography. La Palma, which is a verysteep island, and Tenerife, the largest island (1929 km2) with the highest peak (3718 m a.s.l.) of Spain (Teide volcano), were the most affected for the synoptic situation of Delta storm.

Gran Canaria

Tenerife

LaPalma

ElHierro

LaGomera

La PalmaTenerife

El HierroLa Gomera

Gran Canaria

Lanzarote

Fuerteventura

MethodsMethods

� Weather Research and Forecasting (WRF) Model � ARW dynamics solver� Microphysics: single-moment 3-class scheme� Cumulus: Kain-Fritsch� PBL: Yonsei University PBL scheme� LSM: Rapid Updated Cycle LSM� Radiation: RRTM for LW, Dudhia scheme for SW� IC & BC: ECMWF IFS-0.25º forecast, BC every 3h.

� Conducted numerical simulations:� Base case run: three nested high-resolution domains 9, 3, 1 km � Experimental run without Canary Islands topography� 00 UTC 28 November 2005 – 00 UTC 30 November 2005

� Domains:� D1: 300 x 230 grid points at 9 km� D2: 340 x 226 grid points at 3 km� D3: 337 x 292 grid points at 1 km� 40 sigma vertical levels;� model top at 50 hPa

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VerticalVertical structurestructure: Tenerife: Tenerife

� Under these conditions an internal gravity wave develops aloft Tenerife Island and La Palma as is shown in the cross sections.

� The wind speeds at the lee of the mountain intensifies and the downslope flow enhances. A well defined jet flow in the lee of the mountain presents a wind-speed core of 39.34 m/s at 400 m a.g.l.This jet flow impacts at the surface with wind speeds of 30-32 m/s.

� The vertical structure of the flow provokes important gradients in the wind field, surface regions on the lee side of the mountain separated by no more than 5 km present wind speed differences of 30 m/s.

� At 24 UTC the windstorm has extended downslope and its jet core presents a maximum wind speed of 45.14 m/s at 100 m a.g.l.

00 UTC 29 Nov 12 UTC 28 Nov 18 UTC 28 Nov 00 UTC 29 Nov

B

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MIDERAL DUST

MineralMineral DustDust

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North Africa and Mediterranean- 1/3 x 1/3 degree resolution (in the rotated semi-staggered Arakawa E grid) - 24 vertical levels - 72 - hour daily forecasts - Initialized at 12UTC

East-Asia- 1/2 x 1/2 degree resolution 24 vertical levels- 72 - hour daily forecasts - Initialized at 00UTC

http://www.bsc.es/projects/earthscience/DREAM/CurrentCurrent operationaloperational domainsdomains ofof simulationsimulation

OperationalOperational forecastforecast productsproducts

SDS WS Operational productsModel predictions (72-h):Horizontal distribution

� PM2.5, PM10, TSP at surface and height� Total column mass (dust load)� Dust aerosol optical depth�Wet, dry, total deposition� Visibility (soon available)� Meteorological variables

� Vertical distribution � Cross sections� Fixed point/time profiles

� Fixed point (selected sites/cities)� Dustgrams� Meteograms

Request-only basis:� Numerical data� Climatology

http://www.bsc.es/projects/earthscience/DREAM/

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MeteosatMeteosat Second GenerationSecond Generation

Model has shown very good agreement with observations in a number of studies of single events (e.g., Ansmann et al., 2003, Papayannis et al., 2005; Pérez et al., 2006a;b; Jiménez et al, 2006 ….)

SeaWIFSSeaWIFSLidarsLidars -- EARLINETEARLINET AERONETAERONET -- ONLINEONLINE

Dust forecast and validation systemDust forecast and validation system

Current users of the system:• Scientific (aerosols, ocean, health, …) • Experimental campaigns (TROMPETA, SAMUM, …)• Observational Networks: Earlinet (European Lidar Network), AERONET and in-situ observations• Satellite community• Spanish administration: alert system

- Resolution: 1/3º x 1/3ºhorizontal and 24 levels

- Time step: 120 s- Vegetation cover and soil

properties constant

- Computing time single processor for 24 h

simulation: ~ 70 min- Computing time single processor for 48 years:

~ 851 days (~ 28 months)- MareNostrum ~ 7 days

Atlantic DustSimulations1958-2006

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Hurrican ISAAC – Saharan Dust

•NEW GENERATION OF EARTH SYSTEM MODELLINGFRAMEWORK (ESMF) IN MARENOSTRUM PARALLELIZED ENVIRONMENT

•IMPLEMENTATION OF MINERAL DUST MODULE

•IMPLEMENTATION OF FULL CHEMISTRY COMPONENT ON-LINE

•CODE IMPROVEMENT AFTER BENCHMARK AND PERFORMANCE STUDIES

New model development: Global / Regional ESMF/NMM-b(2007-2010)

Global/Regional modelGlobal/Regional modelRegional modelRegional model

Sigma coordinateSigma coordinateEta coordinateEta coordinate

Arakawa BArakawa B--gridgridArakawa EArakawa E--gridgridMicrophysicalMicrophysical

convectionconvectionConvectionConvection

parameterizationparameterization

NonNon--hydrostatichydrostaticHydrostaticHydrostatic

ESMF/NMMESMF/NMM--b modelb modelEta modelEta modelImplementation of aerosol and chemistrymodule into the most recent parallelized and non-hydrostatic version of the NMM/ NCEP model, with application either as a limitedarea or global model

�� Increasing resolution� Global model domain� High resolution dust forecast

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kg/m3

Dust conc bin 4 Sigma layer 52

Cycle 20080124_1254h forecast

PRELIMINARY RESULTS WITH DUST COMPONENT

Simulation set-up:GlobalCycle 20080124 12 UTC60 hours forecast160 CPU’s8 dust bins769x541 64 sigma layers

WMO Sand and Dust Storm Warning and WMO Sand and Dust Storm Warning and Assessment System (SDS WAS)Assessment System (SDS WAS)

�� To enhance the ability of participating countries to establish aTo enhance the ability of participating countries to establish and improve systems for nd improve systems for forecasting and warning to suppress the impact of Sand and Dust forecasting and warning to suppress the impact of Sand and Dust StormStorm

byby�� Establishing a coordinated global network of Sand and Dust StorEstablishing a coordinated global network of Sand and Dust Storm forecasting m forecasting

centers delivering products useful to a wide range of users in centers delivering products useful to a wide range of users in understanding and understanding and reducing the impacts of SDSreducing the impacts of SDS

BSC-CNSAEMET, Spain China Meteorological

Administration (CMA)Xiao Ye [email protected]

WMO REGIONAL CENTRES

North Africa, Middle East and Europe Asia

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Global Circulation Model: EC-Earth (ECMWF), GISS ModelE (NASA)

Regional modelling system Meteorology: WRF-ARW / WRF-NMM

Emissions: HERMES, EMEP, IPCC

Chemistry Transport: CMAQ / CHIMERE

Mineral Dust: DREAM

Climate modeling system at BSC-CNS:Global Circulation ModelRegional Climate Model

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Volcanic ash forecast (Folch et al 2008)Application to the May 2008 Chaitén volcan eruption

[email protected]

THANKSTHANKSThe BSC-CNS Earth Science Department:Dir: Dr. José M. Baldasano

David Carrió

María Gonçalves

Dr. Santiago gassó

Dra. Patricia Güereca

Karsten Haustein

Dr. Pedro Jiménez

Dr. Oriol Jorba

Eugeni López

Thomas Loridan

Simone Marras

Albert Soret

María Teresa Pay

Dr. Carlos Pérez

Ángel Rincón