1.Introduction#to#ChemicalPathology - Imperial College … · • LFT*(Liver*Function*tests)** o...

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MCD Diagnostics Alexandra BurkeSmith 1. Introduction to Chemical Pathology Professor Karim Meeran 1. List five common diagnostic tests carried out by the department of chemical pathology Electrolytes – (including Na and K) Urea & Creatinine – high levels suggest renal failure Calcium & Phosphate – measure of bone LFT (Liver Function tests) o A measure of liver enzymes. o Damage to the liver results in extra liver enzymes leaking into the blood. o Particular diseases are associated with particular patterns of enzyme leakage. o Enzymes commonly measured include: Alkaline phosphatase (ALP) Aspartate aminotransferase (AST) Alanine aminotransferase (ALT) Gamma glutamyl transferase (GGT) Hormone assays – done as a subdivision of chemical path. Hormones commonly measured include thyroxine, TSH and cortisol Glucose – can be reapidly measured using a glucose sensitive stick on the ward or home. A more sensitive measurement is made in the lab. o Red cells will consume glucose (anaerobic glycolysis), even after it is out of the patient, unless they are poisoned: o Fluoride oxalate is used for this purpose. Cardiac enzymes (present in heart muscle, leak out during MI) o Troponins o Creatine Kinase (CK) o Apartate amino transferase (AST) o Lactate dehydrogenase (LDH) 2. Know how to collect specimens for common tests including electrolytes, urea, glucose and glycosylated haemoglobin When collecting blood… Make sure you use the right bottle If you get it wrong throw it away and start again Make sure you get the correct patient Label the tube correctly with the patients name If it is urgent ensure it gets to the lab in time Different tests require the use of different anticoagulants, therefore samples must be put in different bottles: Bottle Colour Contains Test Red None U&E, TFT, LFTs Yellow (orange) Gel to speed up clot U&E, TFT, LFTs Purple Potassium EDTA HbA1c Green Lithium Heparin Homocysteine Grey Fluoride oxalate (poison) Glucose Turquoise Citrate (anticoag) Clotting factors Normal Ranges: Na = 135145mM/L K = 3.55mM/L Creatinine = 70150µmol/L Urea = 2.56.7mmol/L Proteins = 6080g/L Calcium = 2.122.65mmol/L

Transcript of 1.Introduction#to#ChemicalPathology - Imperial College … · • LFT*(Liver*Function*tests)** o...

Page 1: 1.Introduction#to#ChemicalPathology - Imperial College … · • LFT*(Liver*Function*tests)** o Ameasure$of$liver$enzymes.$ o Damage$to$the$liver$results$in$extra$liver$ enzymes$leaking$into$theblood.$

MCD  Diagnostics       Alexandra  Burke-­‐Smith    

1.  Introduction  to  Chemical  Pathology  Professor  Karim  Meeran  

1. List  five  common  diagnostic  tests  carried  out  by  the  department  of  chemical  pathology    

• Electrolytes  –  (including  Na  and  K)  • Urea  &  Creatinine  –  high  levels  suggest  renal  failure  • Calcium  &  Phosphate  –  measure  of  bone  • LFT  (Liver  Function  tests)    

o A  measure  of  liver  enzymes.  o Damage  to  the  liver  results  in  extra  liver  

enzymes  leaking  into  the  blood.  o Particular  diseases  are  associated  with  

particular  patterns  of  enzyme  leakage.  o Enzymes  commonly  measured  include:  

§ Alkaline  phosphatase  (ALP)  § Aspartate  amino-­‐transferase  (AST)  § Alanine  amino-­‐transferase  (ALT)  § Gamma  glutamyl  transferase  (GGT)  

• Hormone  assays  –  done  as  a  sub-­‐division  of  chemical  path.  Hormones  commonly  measured  include  thyroxine,  TSH  and  cortisol  

• Glucose  –  can  be  reapidly  measured  using  a  glucose  sensitive  stick  on  the  ward  or  home.  A  more  sensitive  measurement  is  made  in  the  lab.  

o Red  cells  will  consume  glucose  (anaerobic  glycolysis),  even  after  it  is  out  of  the  patient,  unless  they  are  poisoned:  

o Fluoride  oxalate  is  used  for  this  purpose.  • Cardiac  enzymes  (present  in  heart  muscle,  leak  out  during  MI)  

o Troponins  o Creatine  Kinase  (CK)  o Apartate  amino  transferase  (AST)  o Lactate  dehydrogenase  (LDH)  

 2. Know  how  to  collect  specimens  for  common  tests  including  electrolytes,  urea,  glucose  and  

glycosylated  haemoglobin    When  collecting  blood…  

• Make  sure  you  use  the  right  bottle  • If  you  get  it  wrong  throw  it  away  and  start  again  • Make  sure  you  get  the  correct  patient  • Label  the  tube  correctly  with  the  patients  name  • If  it  is  urgent  ensure  it  gets  to  the  lab  in  time  

 Different  tests  require  the  use  of  different  anticoagulants,  therefore  samples  must  be  put  in  different  bottles:    

Bottle  Colour   Contains   Test  Red   None   U&E,  TFT,  LFTs  

Yellow  (orange)   Gel  to  speed  up  clot   U&E,  TFT,  LFTs  Purple   Potassium  EDTA   HbA1c  

  Green     Lithium  Heparin   Homocysteine  Grey   Fluoride  oxalate  (poison)   Glucose  

Turquoise   Citrate  (anti-­‐coag)   Clotting  factors    

Normal  Ranges:  • Na  =  135-­‐145mM/L  • K  =  3.5-­‐5mM/L  • Creatinine  =  70-­‐150µmol/L  • Urea  =  2.5-­‐6.7mmol/L  • Proteins  =  60-­‐80g/L  • Calcium  =  2.12-­‐2.65mmol/L  

 

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

• No  anticoagulant  is  added  to  the  red  or  yellow  bottles,  as  the  blood  naturally  clots  using  clotting  factors.  The  clotted  blood  can  then  be  removed  leaving  the  serum  which  is  what  is  needed  for  the  test  

• When  anticoagulants  are  used  (EDTA  or  heparin),  the  blood  will  use  the  clotting  factors  to  clot,  therefore  it  can  be  separated  into  red  cells  and  plasma  (what  is  needed  for  the  test)  

• Measuring  glucose  –  red  cells  consume  glucose  therefore  the  longer  the  sample  is  left  before  testing,  the  more  glucose  is  used  and  thus  the  lower  its  concentration.  Fluoride  oxalate  in  the  grey  bottle  kills  the  red  cells,  therefore  preventing  them  from  using  up  the  glucose  

 A  chemical  pathologist  in  the  lab  needs  to  be  contacted  if:  

• You  want  the  sample  rapidly  centrifuged  out  of  hours  • To  measure  labile  hormones  such  as  insulin  • When  CSF  (spinal  tap)  glucose  and  protein  is  needed  to  be  urgently  measured  

 3. Describe  a  typical  chemical  pathology  request  form  

 

                         

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

2.  The  Diagnosis  of  Infection  and  the  Use  of  the  Virology  Laboratory    Dr  Mark  Atkins    

1. Understand  what  tests  are  available  for  diagnosing  viral  infections    When  diagnosing  a  viral  illness,  it  is  important  to:  

• Take  a  good  history,  including  vaccination  history,  travel  (especially  in  previous  3  weeks),  contact  with  animals,  contact  with  infected  persons  and  occupation  

• Perform  a  clinical  exam  Diagnosis  depends  on  the  clinical  findings,  the  detection  of  specific  antibodies  and/or  the  detection  of  a  virus  in  the  appropriate  clinical  sample      Ideal  qualities  of  a  virological  test:  

• High  specificity  i.e.  have  a  low  level  of  cross  reactivity.  • Sensitive-­‐  detect  the  virus  or  the  antibody  at  very  low  levels  • Rapid-­‐  results  should  be  available  in  a  timely  fashion.  • Non-­‐invasive.  This  reduces  the  risks  of  the  procedure  and  makes  then  easier  to  repeat  if  

necessary.  • Cost  effective.  Most  virology  tests  only  cost  a  few  pounds  each  but  some  of  the  molecular  

tests  are  significantly  more  expensive,  so  use  them  wisely.    Diagnostic  Methods    

• Cell  culture  –  the  gold  standard  but  time  consuming.  Some  viruses  such  as  Hep  C  will  not  grow  in  cell  culture.  Cell  culture  needed  in  forensic  cases  

o Main  method  of  herpes  simplex  and  respiratory  virus  detection  • Electron  Microscopy  (EM)  –  virus  structures  can  be  visualized  

o Mostly  used  for  stool  samples    • Antibody  detection  e.g.  in  HIV  • Antigen  detection,  e.g.  HBsAg  in  Hep  B  • Genome  detection  –  using  PCR  to  detect  viral  DNA  or  RNA  • Quantification  of  antigens  and  genomes  including  antigen  sub-­‐typing  and  genome  typing  –  

essential  for  diagnosis  and  monitoring  of  things  such  as  HIV,  HBV  and  HCV    Immunofluorescence  (IF)  -­‐  Useful  for  the  direct  detection  of  viral  antigens  in  clinical  samples  (eg  respiratory  viruses)  

• Can  be  used  for  typing  and  culture  confirmation  • Relatively  quick  and  inexpensive  but  subjective  and  very  dependent  on  the  skill  of  the  

technician  and  the  quality  of  the  sample      Enzyme  Immuno  assays  (EIA’s)  -­‐  Detection  of  antibodies  and  antigens  using  immunoassays.  

• Examples  include  EIA’s  (enzyme  immunoassays),  Western  blots,  RIBA’s  (recombinant  immunoblot  assays  useful  for  eg  typing  anti-­‐HIV  1  &/or  2)  

• Specific,  sensitive  and  relatively  easy  to  automate.  • Can  be  adapted  to  detect  specific  antibody  classes  (e.g.  IgM  IgG  or  IgA)  or  antigens    • Sensitive  and  can  quantify  amounts  of  antibody  (e.g.  anti  –HBs  antibody)  • Examples  include  HIV  antibody  and  antigen,  Hepatitis  A,B,C  serology,  rubella,  mumps,    

parvo  etc  o EIA’s  for  HIV  antibody  detection  is  an  indirect  method  of  detecting  infection.  Non-­‐

specific  reactions  may  be  a  problem,  therefore  interpretation  of  results  must  take  the  clinical  circumstances  into  account    

     

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    Viral  gene  detection  and  quantification  

• Examples  include  Polymerase  chain  reaction  PCR  (a  target  amplification  system),  and  bDNA  (signal  amplification  system)  

• Both  assays  used  to  measure  “viral  load”  in  HIV,  HCV  HBV  infection.  • Polymerase  chain  reaction  uses  target  amplification  to  allow  detection  and  quantification  

over  very  large  dynamic  ranges  (>  5-­‐8  logs)  o Can  be  very  sensitive  (as  low  as  1  genome  copy)  o Can  subtype  viruses  from    PCR  products  o Problems  with  contamination.  This  can  be  overcome  using  “Real  Time”  PCR.  

• “Real  Time”  PCR  quantification  during  linear  phase  gives  better  reproducibility,  precision  and  dynamic  range.  

o Readily  adapted  to  detect  multiple  viruses  in  the  samples  simultaneously.  o Closed  tube  monitoring  eliminates  contamination  

 2. Appreciate  the  range  of  viruses  that  can  cause  human  disease  3. Know  what  clinical  samples  to  take  to  enable  you  to  make  the  correct  diagnosis    

 A  range  of  viruses  can  cause  various  different  types  of  infection.  These  are  detected  using  different  methods  of  sampling.    Respiratory  infection:  

• Nasopharyngeal  aspirate  (NPA)  • Throat  swab  • Broncheo-­‐alveolar  lavage  (BAL)  • Stools  for  SARS  • Blood  for  PCR  if  disseminated  infection  suspected  • Acute  and  convalescent  serology  

 CNS  disease  –  meningitis/encephalitis:  

• CSF  for  PCR  • Stools  and  throat  swab  for  enterovirus  detection  • Serology  for  West  Nile  infection  and  other  arboviruses-­‐    travel  history  important  

 Diarrhoea  and  vomiting:  

• Stool  • Vomit  –  can  be  used  to  detect  viruses  via  EM  but  stool  better  • PCR  or  antigen  detection  assays  for  noroviruses  best  used  for  stool  samples  

 HIV:  

• Detect  specific  Ab  as  an  indirect  method  of  testing  for  virus  • Antibodies  may  become  detectable  within  weeks  to  months  of  infection  • IgM  is  first  to  appear  followed  by  IgG  • Ab’s  are  detectable  for  life  

 Summary  Sampling  methods  will  depend  on  the  disease  being  investigated:  

• Throat  swab  -­‐  for  virus  isolation  (in  virus  transport  medium,  VTM)  -­‐  useful  in  the  diagnosis  of  enteroviruses  and  respiratory  viruses.  

• Stools  -­‐  for  EM  and  Rotavirus  EIA  (in  sterile  pot)  -­‐  for  the  diagnosis  of  enteroviruses  and  viruses  that  cause  diarrhoea  such  as  rotavirus,  astrovirus,  adenovirus,  noroviruses,  etc.  

• CSF  -­‐  PCR  for  herpes  and  enteroviruses  (in  sterile  container,  VTM  (viur  transport  medium)  not  required)  -­‐  for  the  diagnosis  of  viruses  causing  meningitis  or  encephalitis  such  as  HSV,  VZV,  enteroviruses,  mumps,  etc.  

• Nasopharyngeal  aspirate  (NPA)  -­‐  for  respiratory  viruses  using  Immunofluoresence  (IF)  or  PCR,  such  as  RSV,  influenza  A&B,  adenovirus,  parainfluenza  viruses,  SARS  etc.  

 

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

• Urine  -­‐  virus  isolation  or  PCR  depending  on  which  viruses  you  are  interested  in  (in  sterile  container),  e.g.  BK  virus,  CMV,  etc.  

• Blood  (clotted)  -­‐  for  antibody  detection  • Blood  (EDTA)  -­‐  for  PCR.  Used  for  detection  and  quantification  of  HIV,  HBV  and  HCV.  • Biopsy  samples  can  be  useful  in  certain  circumstances  e.g.  brain  biopsy  in  encephalitis.

Remember:  the  results  of  any  tests  need  to  be  interpreted  in  the  clinical  context  of  the  patient.                                                                                                        

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

3.  The  Diagnosis  of  Infection  and  the  Use  of  the  Bacteriology  Laboratory    Dr  Hugo  Donaldson    

1. Explain  the  concept  of  best-­‐guess  microbiological  diagnosis  and  the  contribution  of  the  laboratory  to  it.  

2. Describe  the  investigations  the  microbiology  laboratory  does  and  their  limitations  3. Describe  the  limitations  of  microbiology  laboratory  investigations.  4. Be  aware  of  the  turn-­‐around  times  of  different  investigations,  particularly  the  delays  inherent  

in  making  cultural  diagnoses.  5. To  know  how  to  interpret  laboratory  results  of  the  commonly  used  tests.    

 Initial  diagnosis  of  infection  is  based  on  the  principle  of  making  an  informed,  best-­‐guess  clinical  diagnosis  based  upon:  History  taking    

• Present  illness:  time  and  onset  of  infection,  symptoms,  signs  (esp.  rashes),  pattern  of  infection  (acute  or  chronic)  

• Other  associated  illnesses  • Past  history:  previous  infections  particularly  with  resistant  organisms  eg  MRSA,  

hospitalizations,  travel,  antimicrobial  use    • Family  and  social  history  • Other  contributory  factors  • Drug  and  antimicrobial  history  

 Types  of  investigations  made  by  the  microbiology  lab:  

• Agar  plate  culture.  Types  of  culture  include:  o In  air  –  for  aerobic  and  facultative  anaerobes  o In  CO2,  eg  for  pneumococcus  o In  reduced  O2  tension,  eg  ampylobacters  o In  absence  of  O2,  eg  anaerobes  such  as  clostridia    o At  different  temperatures:  

§ 37oC  =  mesophils  § 42  oC  =  thermophils  § 22  oC  =  cryophils    

• Microscopy  –  either  direct  under  microscope,  using  stains  or  fluorescence  • Direct  antigen  detection  • Molecular  probes  and  amplification    • Serology    

 Collection  of  a  sample  The  optimum  time  for  collection  of  a  specimen  is:  

• Before  starting  anti-­‐microbial  treatment  • During  the  acute  phase  of  illness    • Collection  of  acute,  convalescent  and  paired  sera  

o Acute  sera:  serum  from  a  patient  suffering  from  a  particular  infection  o Convalescent  sera:  Serum  from  a  person  who  has  recuperated    o Convalescent  sera  which  may  be  of  use  in  treating  a  person  with  the  same  infection;  

while  acute-­‐phase  serum  has  ↑  IgM  antibodies,  CS  has  ↓  IgM,  and  ↑  IgG  antibodies  • Collection  of  clinically  relevant  specimen  • Collection  from  proper  site  with  minimum  contamination  or  normal  flora  • Adequate  quantity  and  appropriate  number  of  specimens  • Clearly  labelled  • Transport  –  make  sure  it  reaches  the  lab  on  time  (portering  problems)  An  urgent  specimen  

will  only  be  dealt  with,  with  prior  arrangement  

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    Procedure  for  making  a  diagnosis:  

• Naked  eye  examination  of  the  specimen  • Microscopy  –  e.g.  light,  fluorescent  etc  –  quick  and  simple,  valuble  in  some  situations,  

limited  in  others  o Most  microbiology  samples  are  cultured  on  agar  plates,  which  takes  time:    

§ For  organisms  to  multiply  sufficiently:  usually  24-­‐48  hours  § To  culture  again  for  antibiotic  sensitivities  –  another  24  hours.  

• Culture  –  for  detection  of  pathogen,  sensitivity  testing  and  epidemiological  typing  • Serology  –  used  when  looking  for  antibodies  as  evidence  of  infection/immunity.  • DNA/RNA  –  PCR  analysis  • Direct  antigen  detection  (particle  agglutination  tests,  ELISA)  

 NB:  Specimens  that  are  processed  in  the  microbiology  labs  without  further  consultation  include:  

• CSF  • Urgent  auramines  • Blood  cultures  • Fluids  –  pleural,  joint,  ascetic  • Rapid  antigen  screen  • Gastric  aspirates  • Corneal  scrape  • Swabs  taken  following  urgent  operations  

Specimens  that  are  referred  to  the  on  call  medical  microbiologist  include:  • Antibiotic  assays  –  done  as  batches  to  make  cost  effective  performed  twice  a  day  • Pregnancy  tests  • Serology  • Faeces  • Routine  sputa  • HVS  

 Examples  of  microbiological  examinations  Urine:  

• Bedside:  naked  eye  –  clear,  cloudy,  haemorrhagic,  bile  stained  • Dip  stick  (NB:  not  microbiological  investigations)  –  blood,  protein,  leucocytes,  bilirubin,  

ketones  • Microscopy  –  WBC  (pyuria  suggests  infection),  RBC  (may  also  indicate  

tumour/microemboli/trauma),  crystals,  casts,  renal  epithelial  and  squamous  epithelial  cells  • Culture  on  MacConkey  agar  (urine  should  be  sterile  so  any  microbial  growth  is  potentially  

significant  in  an  appropriately  taken  sample)  • Quantitative  colony  count  for  significant  bacteria  (more  than  105/ml)  • Antibiotic  sensitivity  testing  of  bacteria  that  grow  

 Sputum:  

• Naked  eye  examination  –  mucoid,  purulent,  blood  stained,  caseous  • Microscopy  –  gram  stain  for  polymorphs  associated  with  bacteria  • Culture  –  to  look  for  specific  pathogens  like  pneumococcus  • Special  culture:  

o TB  o Legionella  o Nocardia  o aspergillus  

• Broncho-­‐alveolar  lavage  • Protected  bronchial  brushing  • Open  lung  biopsy  • Needle  aspirate  of  pleural  effusion  

   

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    Cerebrospinal  Fluid  (CSF):  

• Naked  eye  examination  –  clear,  cloudy,  haemorrhagic,  xanthochromic  • Gram  stain  –  to  look  for  type  e.g.  ploymorph  lymphocyte  and  proportion  of  cells  • ZN/auramine  staining  • Antigen  detection  • Culture  and  sensitivities  • PCR  

 Faeces  

• Naked  eye  –  consistency,  blood  stained,  colour,  presence  of  worms  • Microscopy  –  ova,  crysts,  parasites  • Culture  on  inhibitory  media  –  e.g.  DCA,  selenite  (faeces  contains  1012-­‐14  bacteria  per  gram,  

so  selective  media  are  used  to  suppress  background  “flora”  organisms)  • Toxin  detection  (Clostridium  difficile)  • Special  staining  –  e.g.  Cryptosporidia  

 Routine  blood  cultures    

• Aerobic  cultures,  anaerobic  cultures,  microaerophilic,  CO2  culture  • Sensitivity  testing  • Extended  cultures  –  e.g.  TB,  fungal  cultres,  brucella,  bacterial  endocarditis  • Antigen  detection  –  meningococcus,  pneumococcus,  legionella,  haemophilus,  Cryptococcus  

etc    Other  important  investigations/tests  performed  in  microbiology  labs:  

• Infection  control:  o Screening  and  monitoring  o Mandatory  for  national  surveillance  –  e.g.  MRSA  o Antibiotic  resistance  screening  

• Animal  inoculation  tests  • Identification  of  difficult  organisms  • Testing  for  bacterial  toxins  • Typing  and  finger  printing  bacteria  to  trace  cross  infections  and  outbreaks  • Organise  national  quality  control  for  individual  labs  

                                             

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

4.  Cellular  Pathology    Dr  Marjorie  Walker    

1. List  3  situations  where  histopathology  and  cytopathology  might  commonly  be  used  as  a  diagnostic  method.  

2. Describe  the  nature  of  specimens  sent  for  histopathology  and  cytopathology  laboratory  diagnosis.  

3. List  2  situations  where  frozen  section  diagnosis  is  required  4. Summarise  the  main  steps  involved  in  processing  a  specimen  for  routine  histopathology  

diagnosis  and  indicate  the  likely  time  needed  to  carry  out  these  steps.  5. Explain  the  additional  information  available  from  immunohistochemistry,  and  give  an  

example  of  when  this  technique  may  be  used  6. Describe  the  benefits  of  the  autopsy  7. List  3  benefits  of  cytology  screening  

 Terminology  Pathology:  the  medical  science  and  speciality  practice  classified  as  the  study  of  disease.  It  deals  with  all  aspects  of  disease,  including:  

• Nature  • Cause  • Development  • Consequences  • Pathogenesis  • Manifestation  • Monitoring  disease  progression  

 Histopathology:  encompasses  surgical  and  autopsy  pathology  to  make  diagnoses  on  tissues  

• This  includes  biopsy  material,  surgical  specimens  • Histopathologists  can  make  rapid  diagnoses  when  necessary  (use  of  frozen  sections)  • Autopsy  is  used  to  determine  cause  of  disease,  explain  unsuccessful  treatment,  spread  of  

disease  o Also  used  for  education  and  research  o Autopsies  may  be  performed  by  the  authority  of  the  coroner  (suspicious/unknown  

COD),  or  by  permission  of  the  relatives  or  the  deceased    

Cytopathology:  diagnoses  on  cells  • Uses  cellular  specimens  eg  sputum,  cervical  smears  • Less  invasive  technique  than  obtaining  tissue  for  histopathology  

 Biopsies  Biopsies  are  taken  for  numerous  reasons:  skin  lesions,  suspected  tumours  (must  be  excised  completely  with  margin  of  normal  tissue),  rash  (only  may  require  punch  biopsy)  There  are  various  types  of  biopsies:  

• Endoscopy  enables  the  clinician  to  view  the  gastrointestinal  tract.  Biopsies  are  commonly  taken  from  the  stomach  to  exclude  for  example  cancer,  the  duodenum  to  exclude  coeliac  disease  and  the  large  bowel  to  confirm  cancer  or  diagnose  inflammatory  bowel  disease.  

• Bronchoscopy  allows  a  view  of  the  trachea  and  bronchi  and  biopsies  of  suspected  tumours  or  inflammatory  lung  conditions  can  be  taken  

• Liver  biopsies  can  be  performed  under  imaging  guidance  for  tumours  or  for  diagnosis  of  liver  disease.  

• Renal  biopsies  are  taken  to  determine  the  nature  of  glomerulonephritis  and  other  renal  disease  

     

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    Cytopathology  Uses  

• diagnosis  of  lung  tumours  (non  invasive)  • aid  diagnosis  in  endoscopy  when  brushings  of  the  tumour  can  be  taken  • cervical  and  breast  screening.    • Fluids  such  as  urine  and  ascities  can  be  examined  for  cells,  

Procedure  for  suspected  tumours    Surgical  specimens  removed  at  operation  are  all  sent  to  Histopathology  for  diagnosis  and  to  determine  if  a  tumour  is  completely  excised.  

• The  histopathologists  and  cytopathogists  will  generate  a  report  of  the  examination  of  the  specimen,  which  is  sent  to  the  clinician  responsible  for  the  patient.  

• It  is  important  that  the  report  gives  a  conclusive  diagnosis  and  a  statement  of  tumour  excision  and  prognostic  features  –  for  example  if  surrounding  lymph  nodes  are  involved  or  the  tumour  spread  on  to  the  peritoneum.  

Use  in  screening  Cervical  smears  are  prepared  preserved  (fixed)  with  alcohol,  stained  by  a  special  stain  called  Papanicolaou  and  permanently  preserved.  

1. Who  carries  out  the  procedure?  a. Sample  obtained:  nurse/Dr  b. Preparation  methods  in  lab  =  automated  (mostly)  or  well-­‐trained/experienced  

MLSEs  (medical  laboratory  scientific  officers)  c. Slide  reading  =  trained  screening  technical  staff  d. Check  results  =  consultant    

2. Cervical  smears  are  performed  to  pick  up  cervical  cancer  as  part  of  the  screening  programme    

3. Screening  criteria    a. Test  is  easy  and  non  invasive  b. High  take  up  in  the  population  c. A  significant  number  of  cases  can  be  detected.  d. Something  can  be  done  about  the  disease.  

4. Problems  with  cervical  screening:  a. Failure  to  obtain  a  satisfactory  sample  (smear).  b. Failure  to  make  a  proper  smear.  c. Poor  staining.  d. Poor  interpretation  

Specimen  Procedures  Specimens  for  histopathology  (biopsies  and  whole  tissue)  must  be  “fixed”  in  formalin,  a  preservative  that  stabilises  protein  bonds  and  prevents  autolysis.    

• The  tissue  then  must  be  processed,  sections  cut  and  stained  and  the  histopathologist  must  write  the  report.  

o For  large  specimens,  allowing  for  overnight  fixation  or  longer  if  the  specimen  is  large  or  fatty,  this  process  should  take  2-­‐3  days.    

o Small  biopsies  can  be  processed  in  a  day  and  if  a  rapid  diagnosis  is  required  then  rapid  processing  takes  4-­‐5  hours.  

• A  very  rapid  diagnosis  may  be  required  during  an  operation  –  is  this  a  tumour?  Is  the  margin  of  excision  adequate?  Is  this  lymph  node  involved?  Have  I  got  the  parathyroid?  

o Frozen  section  tissue  is  received  in  the  laboratory  without  any  fixative.    § A  small  sample  is  selected  and  frozen  rapidly.  § A  thin  section  is  cut  on  a  microtome  contained  in  a  refrigeration  cabinet,  

fixed  rapidly  and  then  stained  with  haematoxylin  and  eosin.    § An  answer  can  be  given  by  phone  within  20  minutes.  

       

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    How  are  sections  of  specimens  obtained?  All  specimens  are  allocated  an  identity  number  and  logged  in  to  the  computer.  • During  the  daily  cut  up  of  specimens  the  pathologist  or  biomedical  scientist  selects  and  describes  the  tissue  samples  to  be  examined.  • Some  specimens  (for  example  biopsies)  are  processed  whole,  while  larger  specimens  (e.g.  mastectomies,  colonic  specimens)  have  a  few  selected  pieces  removed.  • Each  selected  piece  of  tissue  is  placed  in  a  small  perforated  plastic  container  with  a  lid.  This  plastic  cassette  receives  the  laboratory  number.  • These  tissue  blocks  are  processed  to  paraffin  wax.    • Once  it  has  been  waxed  and  cut  into  sections  it  is  then  rehydrated  • The  waxed  sample  can  then  be  cut  into  thin  sections  and  mounted  on  slides  (normally  5  microns  thick)  • Several  sections  can  be  taken  from  the  same  tissue  block  to  get  maximum  information  • Haematoxylin  stains  nuclei  blue  and  eosin  the  cytoplasm  pink  • Most  diagnoses  can  be  made  using  H&E  (haematoxylin  and  eosin)  staining  Other  stains  include:  

Ø Silver  nitrate  –  melanin  pigment,  fungi,  calcium  deposits  and  certain  fibres  Ø Other  dyes  can  be  used  to  show  glycogen,  mucins  and  tissue  structures  Ø Gram  staining  for  bacteria  Ø For  difficult  tumours  immunocytochemistry  techniques  are  needed  –  using  labelled  antibodies  

                                                                     

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

5.  Antibodies  as  Diagnostic  Tools  Dr  Keith  Gould      

Immune  basis    Antibodies  can  be  raised  to  any  antigen  or  protein.    This  concept  can  be  used  therapeutically,  diagnostically  and  for  immunodiagnosis  The  unique  specificity  of  antibodies  for  their  target  antigens  is  the  basis  of  many  diagnostic  tests.        The  immune  response  relies  upon  2  exposures.    

Primary  Exposure   Secondary  Exposure  Mainly  IgM  Ab  at  5-­‐10  days  in  serum  Levels  rise  over  next  10-­‐20  days  Slow  decline,  never  completely  disappears    

Ab  response  more  rapid  Higher  levels,  both  peak  and  baseline  Mainly  IgG  with  a  higher  affinity  for  antigen    

 All  Abs  from  one  B-­‐cell  clone  have  the  same  Fab-­‐Ag  specificity  

• Abs  from  different  B-­‐cells  may  have  the  same  Fc  portion  but  will  have  different  Fab  portions  • B-­‐cells  can  produce  both  membrane  and  secreted  forms  of  the  same  Ab  • B-­‐cells  can  switch  production  from  one  Ig  type  to  another  while  maintaining  the  same  Fab  

 Types  of  immunity  

• Active  immunity  =  vaccination  to  develop  large  quantities  of  Abs  • Passive  immunity  =  maternal  protection,  anti-­‐toxin  and  anti-­‐sera  antibodies  • IVIG  =  (Intravenous  IG)  =  normal  herd  immunity,  e.g.  tetanus,  hepatitis,  rabies,  varicella-­‐

zoster.  Given  to  immuno  suppressed  patients    Types  of  antibody  responses    Polyclonal:    Normal  antibody  response  to  antigen  invasion  forming  a  heterogeneous  mixture  of  antibodies.    

• Antibodies  are  directed  to  several  determinants  on  the  antigen  and  the  antibodies  to  a  particular  determinant  will  be  of  different  affinity.  

• So  these  are  polyclonal  antibodies,  they  derive  from  many  different  clonal  B  cells.  Monoclonal:  Homogeneous  colony  on  antibodies  derived  from  a  single  B-­‐cell  clone.  

• Normally  made  artificially  by  fusing  one  antibody  producing  cell  with  a  tumour  cell  that  will  form  a  clone  of  cells  which  will  divide  and  produce  the  same  antibody  for  a  long  period  of  time.  

• Used  as  reagents  for  detecting  cell  markers  

1. Understand  the  therapeutic  and  diagnostic  use  of  manufactured  antibodies  2. Give  examples  of  types  of  substances  that  are  typically  identified  diagnostically  by  means  of  

antibodies    Therapeutic  use  

• Prophylactic  protection  against  microbial  infection  • Anti-­‐cancer  therapy  • Removal  of  T-­‐cells  from  bone  marrow  grafts  • Block  cytokine  activity  &  regulation  

Diagnostic  use  • Tissue  typing  • Blood  group  serology  • Immunoassays    

o hormones  o antibodies  o antigens  

• Immunodiagnosis  

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

o Infectious  diseases  o Autoimmunity  o Allergy  o Malignancy  

 3. Explain  the  basic  principles  of  detection  methods    4. Describe  the  advantages  in  different  situations  of  the  types  of  detection  system;  for  example,  

enzyme-­‐linked  antibodies,  radioactively  labeled  antibodies    Detection  methods  These  rely  upon  antibody-­‐antigen  interactions:    

• Known  antibodies  can  be  used  to  detect  the  presence  of  specific  antigens,  eg  detection  of  streptococci  in  throat  swabs  

• Known  antigens  can  then  be  used  to  detect  specific  antibodies,  eg  HIV  tests  to  test  for  anti-­‐HIV  antibodies  

 Immuno-­‐precipitation  

• Excess  Ag  and  Ab  form  small  soluble  complexes,  but  Ab  and  Ag  equivalence  >  extensive  cross-­‐linking  and  the  formation  of  large  insoluble  complexes  which  precipitate  

• This  can  be  used  to  isolate  and  concentrate  a  particular  antigen      Immuno-­‐agglutination  

• Semi-­‐quantitative  assay  to  get  approximate  concentration  of  Ag  • Clinical  example  is  haemagglutination  used  in  blood  type  determination;  used  to  determine  

the  presence  of  particular  antigens      Labeled  Antibodies    

• Ab’s  can  be  labelled  with  radioactive  isotopes  –  e.g.  125I,  14C,  35S  • Can  also  be  labelled  with  enzymes  which  convert  an  added  substrate  to  a  coloured  product  

–  e.g.  alkalinephosphatase.  E.g.  immunoperoxidase  staining  o ELISA  (enzyme-­‐linked  immunosorbent  assay)  -­‐  enzymes  added  to  antibodies  

causing  a  coloured  reaction  –  the  amount  of  colour  is  proportional  to  the  amount  of  antigen  

• Can  also  be  labelled  with  fluorescent  compounds  such  as  fluorescein  which  are  excited  under  polarised  light  under  a  microscope.  E.g.  for  looking  at  anti-­‐neutrophil  cytoplasmic  antibodies  

 5. Understand  how  antibodies  may  be  used  in  clinical  practice  

 Use  in  clinical  immunology:  

• Immunodeficiency  o Serum  immunoglobulin  levels  are  measured  using  serum  electrophoresis,  ELISA,  or  

nephleometry  (IgG,  IgM,  IgA  only)  o Specific  antibodies  can  then  be  measured  using  ELISA    

• Malignancy  • Autoimmunity  

o Autoantibodies  can  be  investigated  with  biopsy,  serology  and  immunofluorescence    • Inflammation  • Tissue  typing  and  transplantation  

 Use  in  Pathology:  

• Clinical  chemistry  • Haematology  and  blood  transfusion  • Medical  microbiology  • Histopatholgy  

 

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MCD  Diagnostics       Alexandra  Burke-­‐Smith    

6. Explain  how  antibodies  can  be  generated  (experimentally  or  commercially)  for  diagnostic  purposes  

 Antibodies  are  produced  via  immunisation  –  whether  it  be  in  cows,  horses,  mice  humans  etc  

• Immunised  with  a  particular  antigen  +  adjuvant  o Adjuvants  act  to  boost  the  immune  system  and  so  increase  Ab  production.  An  

example  are  aluminium  derivatives  • Normally  2  booster  injections  are  administered  after  initial  one  • This  produces  a  polyclonal  antibody  response  • Cloned  myeloma  tumour  cells,  that  have  been  fused  with  spleen  cells  from  an  immunised  

animal  using  PEG  to  allow  membrane  fusion  can  also  be  used  in  the  lab  to  produce  monoclonal  Ab’s  for  the  Ag  that  was  used  to  immunise  the  animal  with  

Genetically  engineered  Abs  =  the  cloning  and  expression  of  antibody  genes  is  used  in  order  to  create  antibody  libraries.  

• These  can  then  be  transferred  into  mammalian  cells  in  order  to  complete  glycosylated  antibodies.    

• Engineered  chimeric  antibodies  are  also  possible