1 Long distance transport of thiamine and polyamines 2 ... · 91 derivatives (commonly referred to...
Transcript of 1 Long distance transport of thiamine and polyamines 2 ... · 91 derivatives (commonly referred to...
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Running head: Long distance transport of thiamine and polyamines 1
Address correspondence to: Teresa B. Fitzpatrick 2
Department of Botany and Plant Biology, 3
University of Geneva, 4
1211 Geneva, 5
Switzerland 6
Telephone: +41-22-3793016 7
Email: [email protected] 8
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Research area: Membranes, Transport and Biogenetics (Secondary area: Biochemistry and 10
Metabolism) 11
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Plant Physiology Preview. Published on March 22, 2016, as DOI:10.1104/pp.16.00009
Copyright 2016 by the American Society of Plant Biologists
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Long distance transport of thiamine (vitamin B1) is concomitant with that of 15
polyamines in Arabidopsis 16
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Jacopo Martinis1†, Elisabet Gas-Pascual1†, Nicolas Szydlowski1†, Michèle Crèvecoeur1, Alexandra 18
Gisler1, Lukas Bürkle2 and Teresa B. Fitzpatrick1* 19 20
21 1Department of Botany and Plant Biology, University of Geneva, 30 Quai Ernest Ansermet, 1211 22
Geneva, Switzerland. 23
2The Institute of Agricultural Sciences, ETH Zurich, Universitätstrasse 2, 8092 Zurich, Switzerland. 24
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†These authors contributed equally. 27 28
One sentence summary: Long distance transport of thiamine is facilitated by PUT3 concomitant 29
with that of polyamines and is required for growth and development. 30
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1Financial support is gratefully acknowledged from the Swiss National Science Foundation (Grant 32
PPOOA_1191186 and 31003A-141117/1 to T.B.F.) as well as the University of Geneva. 33
34 2Present address: Department of Biochemistry and Molecular Biology, The University of Georgia, 35
Athens, GA 30602, U.S.A. (E.G.P.); Miniaturisation pour la Synthèse l'Analyse et la Protéomique, 36
Université Lille1 Sciences et Technologies, 59655 Villeneuve d'Ascq Cedex, France (N.S.); Stratec 37
Biomedical AG, 75217 Birkenfeld, Germany (L.B.). 38
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* Address correspondence to [email protected]
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ABSTRACT 41
Thiamine (vitamin B1) is ubiquitous and essential for cell energy supply in all organisms as a vital 42
metabolic cofactor, known for over a century. In plants, it is established that biosynthesis de novo is 43
taking place predominantly in green tissues and is furthermore limited to plastids. Therefore, 44
transport mechanisms are required to mediate the movement of this polar metabolite from source to 45
sink tissue to activate key enzymes in cellular energy generating pathways but are currently 46
unknown. Similar to thiamine, polyamines are an essential set of charged molecules required for 47
diverse aspects of growth and development, the homeostasis of which necessitate long distance 48
transport processes that have remained elusive. Here, a yeast-based screen allowed us to identify 49
Arabidopsis (Arabidopsis thaliana) PUT3 as a thiamine transporter. A combination of biochemical, 50
physiological and genetic approaches permitted us to show that PUT3 mediates phloem transport of 51
both thiamine and polyamines. Loss of function of PUT3 demonstrated that the tissue distribution 52
of these metabolites is altered with growth and developmental consequences. The pivotal role of 53
PUT3 mediated thiamine and polyamine homeostasis in plants and its importance for plant fitness is 54
revealed through these findings. 55
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INTRODUCTION 57
Thiamine (vitamin B1) is essential for all organisms being well recognized in its diphosphorylated 58
form, thiamine diphosphate (TDP) (Fig. 1A), as a necessary cofactor for key metabolic enzymes 59
involved in glycolysis and the citric acid cycle (Fitzpatrick & Thore, 2014). In plants, it is also 60
necessary for the Calvin cycle, the biochemical route of carbon fixation (Khozaei et al., 2015). 61
Therefore, thiamine is vital for cell energy supply in all organisms. Interestingly, some additional 62
roles for thiamine have been proposed that include involvement in responses to DNA damage 63
(Machado et al., 1996), as well as the activation of plant defenses, resistance to pathogen attack and 64
attenuation of environmental stress responses (Ahn et al., 2005, Rapala-Kozik et al., 2012). Humans 65
cannot produce thiamine de novo with plants representing one of the most important sources of the 66
compound in the human diet. However, deficiency remains a critical global problem causing 67
detrimental neurological effects and cardiovascular problems particularly among populations that 68
rely on a single crop for sustenance, e.g. polished rice (Fitzpatrick et al., 2012). Thiamine is formed 69
by the condensation of the two separately biosynthesized heterocycle moieties 70
(hydroxyethylthiazole (HET) and hydroxymethylpyrimidine (HMP), respectively) (Supplemental 71
Fig. S1) and is later diphosphorylated to the cofactor form, TDP (reviewed in Fitzpatrick & Thore, 72
2014). Several previously elusive steps of thiamine biosynthesis de novo have been resolved 73
recently, one of which involves an unexpected suicide mechanism, where the catalytic protein 74
donates sulfur to the molecule in a single turnover reaction (Chatterjee et al., 2011) (Supplemental 75
Fig. S1). Remarkably, the majority of the enzymes involved in biosynthesis de novo are exclusively 76
found in the chloroplast, the exception being the kinase that diphosphorylates thiamine to TDP, 77
which is in the cytosol (Ajjawi et al., 2007a). Accordingly, the thiamine biosynthetic genes are 78
strongly expressed in green tissues but only at a very low level (if at all) in other non-79
photosynthetic tissues such as roots (Colinas & Fitzpatrick, 2015). However, thiamine is essential in 80
all actively dividing meristematic stem cells and organ initial cells (Wightman & Brown, 1953) and 81
thus in non-photosynthetic organs such as the roots. It is therefore relevant that a physiological 82
study in 1974 (Kruszewski & Jacobs, 1974) showed that thiamine moves through petiolar sections 83
of tomato with strong basipetal polarity and with kinetics similar to auxin and giberellin (at a 84
velocity of 3-5 mm per hour). Indeed, in the 1940s, thiamine was considered to fulfil the 85
requirements of a hormone in higher plants (Bonner, 1940, Bonner, 1942). This was due to the 86
observation that in order to grow aseptically, excised roots of many species require thiamine in 87
small amounts. Moreover, such observations were considered as confirmation of an hypothesis that 88
in the intact plant, thiamine is biosynthesized in the leaves and moves from there to the roots, which 89
cannot biosynthesize it sufficiently but need it for development. As thiamine and its phosphorylated 90
derivatives (commonly referred to as vitamin B1) are cationic molecules (i.e. charged) at 91
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physiological pH, the existence of transporters that can mediate their trafficking therefore become 92
apparent. Although the characterization of a homolog of the yeast mitochondrial transporter was 93
reported recently (Frelin et al., 2012), it remains uncharacterized in planta, while the proteins 94
participating in long distance transport of thiamine in plants have remained elusive. 95
Analogous to thiamine, polyamines are cationic molecules at physiological pH essential for the 96
growth and survival of all organisms. The diverse range of activities include regulation of cell 97
division, developmental processes such as those of root formation and flowering initiation, as well 98
as environmental stress responses (Alcázar et al., 2010, Kumar et al., 1997, Kusano et al., 2008). 99
Key representative molecules include putrescine (Put), spermidine (Spd) and spermine (Spm), all 100
three of which are derived from the amino acid arginine, via the intermediate agmatine (Agm), as 101
well as cadaverine (Cad) that is derived from lysine (Supplemental Fig. S1). Akin to other essential 102
multifunctional plant metabolites, polyamine contents must be carefully controlled to maintain 103
cellular homeostasis. This is achieved through biosynthesis, degradation, conjugation (to phenolic 104
acids, proteins, nucleic acids, membrane structures) and transport (Martin-Tanguy, 2001). Although 105
polyamine metabolism has been studied extensively, little is known of its transport in plants with 106
the exception of the recently identified PUT family (Fujita et al., 2012, Mulangi et al., 2012) and 107
the OCT1 transporter from Arabidopsis (Arabidopsis thaliana) that is implicated in Cad transport 108
(Strohm et al., 2015). The PUT family of proteins are localized at the cellular level to various 109
compartments including the plasma membrane, Golgi apparatus and endoplasmic reticulum (Fujita 110
et al., 2012, Li et al., 2013). However, polyamine homeostasis is also regulated by long distance 111
transport and indeed their presence in the vascular system of plants has been established in several 112
species (Friedman et al., 1986, Pommerrenig et al., 2011, Sood & Nagar, 2005, Yokota et al., 113
1994). To date nothing is known on the components of intercellular or long distance transport of 114
polyamines. 115
Here, a yeast-based screen allowed us to identify Arabidopsis PUT3 as a thiamine transporter. 116
Expression studies showed that PUT3 is localized to the phloem tissue in Arabidopsis and loss of 117
function studies showed that PUT3 is required for growth and development. A series of 118
micrografting and biochemical experiments demonstrated that PUT3 is important for long distance 119
transport of both thiamine and polyamines and thereby revealed its importance for homeostasis of 120
these essential molecules and maintenance of plant fitness. 121
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RESULTS 123
Identification of an Arabidopsis thiamine transporter 124
This study was initiated by performing a complementation screen employing a cDNA library from 125
Arabidopsis (Minet et al., 1992) with the yeast mutant CVY4, deficient in both the biosynthesis and 126
the transport of thiamine (Vogl et al., 2008). This strain grows either in the presence of strong 127
thiamine supplementation (120 µM) or can be complemented with the yeast thiamine biosynthesis 128
gene THI4 (Vogl et al., 2008). In line with this, several clones harboring the ortholog of the latter 129
from Arabidopsis (THI1) were found to complement the growth phenotype even in the absence of 130
thiamine supplementation in our screen. On the other hand, a single Arabidopsis locus (At5g05630) 131
encoding a protein belonging to the amino acid permease family was found to restore growth in the 132
presence of low levels of thiamine (1.2 µM), thus complementing the impairment in thiamine 133
transport in this yeast strain (Fig. 1A). This protein has been previously reported to facilitate the 134
uptake of polyamines in a yeast based study and was accordingly named POLYAMINE UPTAKE 135
TRANSPORTER 3 (PUT3) (Mulangi et al., 2012) and mediated paraquat uptake in Arabidopsis for 136
which it was given the name RESISTANT TO METHYL VIOLOGEN 1 (RMV1)(Fujita et al., 137
2012). The PUT3/RMV1 locus, which we will refer to as PUT3 from here on, encodes a protein of 138
490 amino acid residues and is predicted to have 12 transmembrane domains with the N- and C-139
terminal hydrophilic domains residing on the inside of the membrane (Fig. 1B). It has 4 paralogs in 140
Arabidopsis, At1g31820 (68% identity), At1g31830 (63% identity), At3g19553 (52% identity) and 141
At3g13620 (43% identity), respectively. None of the latter paralogs were found in our screen and 142
presumably cannot transport thiamine (at least in yeast) under the conditions used. Additional close 143
homologs of PUT3 were identified in several plants including Vitis vinifera (grapevine), Populus 144
trichocarpa (poplar), Oryza sativa (rice), Zea mays (corn), Sorghum bicolor (Sorghum), as well as 145
Physcomitrella patens (moss), while weaker homologs could be identified in Chlorella variabilis 146
(green algae). Notably, an extensive recent phylogenetic study hypothesized that this family of 147
transporters was acquired by horizontal transfer from green algae (Mulangi et al., 2012). 148
149
Kinetics of PUT3 facilitated thiamine transport 150
The kinetics of thiamine transport by PUT3 in yeast was characterized using the tritiated vitamers, 151
[3H]-thiamine and [3H]-TDP. Note, vitamers are related chemical substances that fulfil the same 152
specific vitamin function. Uptake occurred at an optimal pH of 5.5 (Supplemental Fig. S2A). Both 153
vitamers could be transported at similar rates (Fig. 1C). In addition, the vitamers displayed similar 154
Michaelis-Menten parameters (Vmax:169.3 ± 12.3 pmol min-1.OD cells-1, KM:43.3 ± 7.7 µM for 155
thiamine and Vmax:146.5 ± 13.7 pmol min-1.OD cells-1, KM of 34.2 ± 8.6 µM for TDP, respectively 156
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(Fig. 1D and 1E)). Competition experiments showed that B1 vitamers, TDP, thiamine 157
monophosphate (TMP) and thiamine were able to compete for TDP transport, whereas HET or 158
HMP (the thiamine biosynthesis precursors) were not (Fig. 1F). Interestingly, the thiamine 159
antagonist, pyrithiamine, also competed with TDP uptake (Fig. 1F). As anticipated, the polyamine 160
Spd, shown previously to be transported by PUT3 in a yeast based assay (Mulangi et al., 2012), 161
competed strongly with TDP transport (Fig. 1G), indicating that thiamine uses the same transport 162
pathway as polyamines. The withdrawal of glucose or addition of the protonophore, 163
carbonylcyanide-3-chlorophenylhydrazone, abolishes the transport activity, suggesting that 164
transport occurs via H+ symport (Fig. 1H). Since PUT3 was originally annotated as a putative 165
amino acid transporter (Jack et al., 2000), we also tested for competition of TDP uptake in the 166
presence of unlabeled cyclic amino-acids, but none showed significant modulation of transport 167
(Supplemental Fig. S2B). In the same context and as the human thiamine transporter belongs to the 168
folate transporter family (Zhao & Goldman, 2013), we also tested folate, but it did not compete for 169
TDP transport (Supplemental Fig. S2B). Similar results were obtained when the competition studies 170
were performed with thiamine instead of TDP. It can therefore be concluded that PUT3 is a 171
polyspecific transporter than mediates thiamine as well as polyamine transport, at least in yeast. 172
173
PUT3 is localized to the phloem and mediates transport of B1 vitamers 174
Given the demonstrated ability of PUT3 to import thiamine/TDP in yeast, we wanted to establish its 175
localization in planta, to complement the previous cellular localization studies of this protein (Fujita 176
et al., 2012). To this end, we generated plants expressing the β-GLUCURONIDASE (GUS) 177
reporter gene under control of the 850 base-pair region immediately upstream of the transcriptional 178
start site of PUT3 (pPUT3-GUS). Representative pictures of 20 independent transgenic lines 179
analyzed are shown in Fig. 2A. In all lines examined, PUT3 promoter driven GUS activity was 180
predominant in the vascular tissue of leaves and the central cylinder of roots. In particular, two 181
strands of GUS activity could be observed in the central stele of the differentiation region of the 182
root. Moreover, transverse sections of the root tissue established localization to the phloem tissue 183
(Fig. 2B). Weak GUS activity was also observed in the anthers of flowers, as well as the base and 184
tip of mature siliques (Supplemental Fig. S3). At the subcellular level, fusion of the full-length 185
PUT3 protein sequence to YFP and examination of the corresponding fluorescence upon transient 186
expression in Arabidopsis mesophyll protoplasts confirmed the exclusive location of this protein to 187
the plasma membrane (Supplemental Fig. S4) in agreement with a previous report (Fujita et al., 188
2012). 189
Since B1 vitamers need to be translocated from sites of biosynthesis (source) to sites where they 190
cannot be biosynthesized but are required (sink), we were prompted to investigate if they are found 191
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in the phloem sap. Indeed, the three B1 vitamers could be detected in the phloem sap of Arabidopsis 192
(Fig. 3A) and thereby implies that a transport system is in place for translocation into this tissue. It 193
is worth noting that the ratio between TDP and either TMP or thiamine in the phloem sap is 194
drastically reduced when compared with extracts from whole rosette leaves (Supplemental Fig. S5). 195
In order to test the contribution of PUT3 to the vitamin B1 transport process, the B1 vitamer profiles 196
of phloem exudates from wild-type plants were compared with that of the previously characterized 197
T-DNA insertion mutant line rmv1 (GT_3_3436) (Fujita et al., 2012). Downregulation of PUT3 198
expression was confirmed by real-time quantitative PCR (qPCR) (Supplemental Fig. S6). Indeed, 199
the total vitamin B1 content was decreased in the rmv1 mutant phloem exudates compared to that of 200
the wild-type (Fig. 3B). Importantly, B1 vitamer contents were restored to wild-type levels in 201
phloem exudates of rmv1 carrying the PUT3 transgene under control of its own promoter (Fig. 3B, 202
rmv1/pPUT3:PUT3). These observations suggest that PUT3 is involved in transport of vitamin B1 203
in the phloem. 204
205
PUT3 also mediates phloem transport of polyamines 206
The localization of PUT3 to the phloem tissue and its previous reported ability to facilitate 207
polyamine transport, at least in yeast (Mulangi et al., 2012), prompted us to next investigate the 208
polyamine profiles of phloem exudates from Arabidopsis. In particular, we adapted a protocol 209
(Fontaniella et al., 2001) to profile the diamines Cad and Put, the triamine Spd, the tetramine Spm, 210
as well as the Put/Spd/Spm precursor Agm. All of these compounds could be detected in phloem 211
exudates from Arabidopsis (Fig. 4A). Put was the most abundant polyamine detected followed by 212
Spd and Cad, while Spm accumulated at much lower levels (Fig. 4B). Significantly, there was a 213
considerable decrease in the levels of Put, in particular, in phloem exudates of rmv1 (Fig. 4B). 214
Importantly, the polyamine profile was restored to that of wild-type in phloem exudates of rmv1 215
carrying the PUT3 transgene under control of its own promoter (Fig. 4B, rmv1/pPUT3:PUT3), 216
validating the role of PUT3 in this molecular phenotype. Taken together, this implies that PUT3 is 217
required for transport of both polyamines and vitamin B1 in phloem tissue. 218
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Alterations in growth and developmental processes are associated with PUT3 220
As B1 vitamers and polyamines are essential for development in plants, we next examined the 221
phenotypic consequences of loss of function of PUT3 on plant growth. Notably, previous studies on 222
PUT3 in Arabidopsis were restricted to quantifying its association with paraquat resistance (Fujita 223
et al., 2012). Interestingly, here we observed that the rmv1 mutant showed stunted growth under 224
standard growth conditions that was not reported on in previous studies (Fig. 5A), and was 225
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corroborated by a slower rate of root growth compared to wild-type (Fig. 5B). Furthermore, rmv1 226
entered the reproductive phase later than wild-type (Fig. 5C), bolting at day 67 instead of day 62 227
(Fig. 5D), concomitant with an increase in the number of rosette leaves at this developmental stage 228
(Fig. 5E and 5F). The observed phenotypes were most pronounced under an 8-hour photoperiod and 229
were significantly attenuated under longer photoperiods (data not shown). All of the growth and 230
developmental phenotypes were abrogated in rmv1 upon introduction of the PUT3 transgene (Fig. 231
5A-5F, rmv1/pPUT3:PUT3). It must therefore be concluded that PUT3 is required for proper 232
growth and development in Arabidopsis. 233
234
Long distance transport of a shoot-derived metabolite by PUT3 is responsible for the root 235
development phenotype in rmv1 236
To further probe the growth and development phenotype of rmv1 and the possible physiological 237
relevance of PUT3 in long distance transport, we performed a series of grafting experiments. 238
Notably, grafted plants with the same genetic combinations exhibited the same phenotypes as non-239
grafted plants, i.e. grafting of an rmv1 scion onto its corresponding rootstock (rmv1/rmv1) led to 240
retention of the stunted growth phenotype compared to grafting of the wild-type scion onto its 241
corresponding rootstock (wild-type/wild-type) (Fig. 6). Remarkably, grafting of the wild-type scion 242
onto the rmv1 rootstock (wild-type/rmv1) led to recovery of the stunted root growth phenotype to 243
that of the corresponding grafted wild-type plants (wild-type/wild-type) (Fig. 6). On the other hand, 244
the reciprocal graft of the rmv1 scion onto the wild-type rootstock (rmv1/wild-type) did not lead to 245
recovery of root growth impairment (Fig. 6). Indeed, root growth was even further impaired than 246
rmv1/rmv1. This data supports the notion that PUT3 is required for long distance transport of a 247
shoot-derived metabolite that is essential for proper root growth. 248
249
Shoot to root partitioning of vitamin B1 as a function of PUT3 250
Given the implication of PUT3 in long distance transport, we next sought to obtain a molecular 251
explanation for the growth impairment phenotypes observed. In the first instance, we therefore 252
examined shoot and root partitioning of B1 vitamers in seedlings. Intriguingly, B1 vitamer levels in 253
shoots and roots (albeit to a much lesser extent) of rmv1 were lower than those of wild-type (Fig. 254
7A). While the slight depletion in root tissue (sink tissue) is consistent with the role of PUT3 in 255
long distance transport of B1 vitamers from source to sink, we expected a corresponding 256
accumulation of B1 vitamers in shoots (source tissue) rather than a depletion. Interestingly, rmv1 257
does not show the well-characterized pale shoot phenotype associated with a deficiency in B1 258
vitamers (Ajjawi et al., 2007a, Ajjawi et al., 2007b, Raschke et al., 2007). Nonetheless, levels of B1 259
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vitamers in shoots and roots of rmv1 recovered upon reintroduction of the PUT3 transgene (Fig. 260
7A). To provide evidence that shoot-derived vitamin B1 is important for root growth in particular, 261
another series of grafting experiments was performed with the Arabidopsis mutant line th1-201 262
(Ajjawi et al., 2007b). In this line, the THIAMIN SYNTHASE enzyme TH1 (encoded at locus 263
At1g22940), which condenses the thiazole and pyrimidine heterocycles to form TMP, is impaired, 264
preventing thiamine biosynthesis de novo and resulting in overall stunted shoot and root growth and 265
pale leaves. Remarkably, grafting of the wild-type scion onto the th1-201 rootstock (wild-type/th1-266
201) led to recovery of the stunted root growth phenotype that is observed with th1-201 (Fig. 7B). 267
However, grafting of the rmv1 scion onto the th1-201 rootstock (rmv1/th1-201) did not lead to 268
recovery of the short-root phenotype in th1-201. Indeed, root growth was even more impaired than 269
for the th1-201/th1-201 genetic combination, corroborating the notion that loss of function of PUT3 270
in the shoot, in particular, has a negative impact on root growth (Fig. 7B). Taken together, the data 271
demonstrate that long distance transport of B1 vitamers from the shoot is necessary for root growth 272
and that impairment of PUT3 in the shoot has a negative impact on root growth. 273
274
Shoot to root partitioning of polyamines as a function of PUT3 275
Given that PUT3 is also implicated in polyamine transport, we next looked at shoot to root 276
partitioning of polyamine contents. In the first instance, we noted that the total polyamine content is 277
very similar between shoots and roots in wild-type plants (Fig. 8A). A significant reduction of total 278
polyamine levels was observed in the roots of rmv1, whereas shoot content remained similar to that 279
of wild-type (Fig. 8A). Notably, levels of root polyamines recovered upon reintroduction of the 280
PUT3 transgene in rmv1 (Fig. 8A). Intriguingly, a closer look at the polyamines measured indicates 281
that the predominant polyamine in shoots and roots is Spd and that it is mainly this polyamine that 282
is depleted in roots of rmv1 (Fig. 8B-8E). This is in contrast to the polyamine profile of phloem 283
exudates, where Put was the predominant polyamine detected and the one most depleted in rmv1 284
(Fig. 4B). 285
286
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DISCUSSION 287
A fundamental understanding of phloem transport with its important role in plant development, 288
reproduction, signaling and growth is central to plant biology. This is further emphasized by the 289
core set of compounds, such as biological cofactors and growth regulators, required in all living 290
cells to drive key metabolic processes, the biosynthesis of which may be restricted to certain organs 291
and therefore must be transported to the site of requirement. As central components of metabolic 292
function, the supply of many of these molecules must be strictly regulated, such that provision is 293
coordinated with metabolic needs. However, despite their critical roles, surprisingly little is known 294
on the intercellular transport of such molecules in plants. In this study, we demonstrated the 295
importance of long distance transport of vitamin B1 and polyamines as mediated by the phloem 296
localized transporter PUT3. Disruption of PUT3 led to a deficit of B1 vitamers and polyamines in 297
phloem exudates that perturbed the homeostasis of these compounds in the organs where they are 298
required resulting in a negative impact on growth and development in Arabidopsis. 299
Long distance transporters of the vital cofactor vitamin B1 have been supposed for almost a 300
century (Bonner, 1940, Bonner, 1942), yet the proteins carrying out these processes and evidence 301
for the presence of this family of compounds in the vascular system have remained elusive. Only a 302
single transporter has been reported for vitamin B1 in plants and operates at the subcellular level in 303
the mitochondrial membrane (Frelin et al., 2012). Polyamines, on the other hand, were detected in 304
the phloem sap several decades ago (Friedman et al., 1986). While they can be biosynthesized to a 305
certain extent in the phloem (Pommerrenig et al., 2011), the factors facilitating transport of these 306
important cationic molecules in the vascular system to maintain homeostasis were unknown. Here 307
we have demonstrated the involvement of PUT3 in these transport processes in plants. Although 308
PUT3 was previously implicated in subcellular polyamine transport based on a yeast 309
complementation assay (Mulangi et al., 2012), as well as paraquat transport in Arabidopsis (Fujita 310
et al., 2012), it went unnoted that it is localized to the phloem and mediates long distance transport. 311
Here we have shown that the affinity of PUT3 for B1 vitamers is similar to those reported for 312
polyamines and paraquat, i.e. low μM range (Fujita et al., 2012), classifying it as a polyspecific 313
high affinity cationic transporter. Indeed, exogenous thiamine reportedly enhances tolerance to 314
paraquat (Tunc-Ozdemir et al., 2009), supporting the notion that all of these compounds use the 315
same trafficking pathway. The functional significance of PUT3 for phloem transport of B1 vitamers 316
and polyamines became evident from the deficit of these compounds in the phloem exudates of the 317
PUT3 mutant line rmv1, previously characterized because of its resistance to paraquat (Fujita et al., 318
2012). The implication of PUT3 in these transport processes is validated upon restoration of the B1 319
vitamer and polyamine contents in phloem exudates of the transgenic rmv1 line expressing PUT3 320
under the control of its own promoter sequence (rmv1/pPUT3:PUT3). We acknowledge that the 321
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EDTA-based method employed here for the collection of phloem sap has well-documented pitfalls 322
(Turgeon and Wolf, 2009), including that the procedure requires the cutting of a surface and 323
extended exposure of cells to EDTA causes damage, leakage from which may contaminate the sap. 324
Therefore, we chose the EDTA-facilitated phloem exudation method described by Tetyuk et al. that 325
has been optimized for Arabidopsis (Tetyuk et al., 2013), in which the samples are exposed to 326
EDTA for 1 hour, washed with water, followed by collection of the phloem exudate into water. 327
This strives to minimize cell damage and downstream interference from EDTA, while removing 328
compounds that have accumulated from damaged or cut cells. Indeed, assuming no metabolite 329
degradation occurs during the procedure, the divergent B1 vitamer and polyamine profiles of 330
phloem exudates versus tissue extracts could serve to support the predominant recovery of 331
metabolites being transported in the phloem with this method rather than that from damaged cells. 332
Moreover, the collection of material directly into water without prior EDTA-treatment was free of 333
B1 vitamers and polyamines and used as a negative control. Nonetheless, the use of another method 334
designed to exclusively measure mobile elements in the phloem sap could serve to validate the 335
findings. 336
As vitamin B1 biosynthesis de novo is predominantly limited to photosynthesizing tissue 337
(reviewed in Colinas & Fitzpatrick, 2015), it can be suggested that PUT3 activity in its capacity as 338
long distance B1 vitamer transporter is mainly restricted to shoot tissue. On the one hand, the 339
requirement for shoot to root long distance transport of vitamin B1 is supported by the recovery of 340
root growth in the biosynthesis mutant th1-201 upon grafting of a wild-type scion. On the other 341
hand, the failure to restore root growth upon grafting a PUT3 mutant scion (rmv1) onto th1-201 342
rootstock demonstrates the important role of PUT3 in this process. In line with this, we predict that 343
PUT3 is involved in phloem loading of B1 vitamers and is supported firstly by the decrease in B1 344
vitamer contents in phloem exudates and secondly by the decrease (albeit slight) in the root tissue 345
of rmv1. We noted above that the ratio between TDP and either TMP or thiamine in the phloem sap 346
is drastically reduced when compared with extracts from whole rosette leaves. Therefore, either a 347
selective transport system takes place in the leaves for phloem loading, and/or vitamers can be 348
interconverted within the phloem tissues by phosphatases that may be non-specific. The deficit in 349
shoot tissue B1 vitamer contents of rmv1 cannot be explained at present and requires further 350
investigation. Nonetheless, recovery towards wild-type shoot to root partitioning of B1 vitamers is 351
observed in the transgenic rmv1/pPUT3:PUT3 line implicating PUT3 in the process. The retention 352
of considerable levels of vitamin B1 in the roots even in the absence of PUT3 suggests that more 353
components of long distance transport or perhaps salvaging of the vitamin in the root remain to be 354
discovered in future studies. As noted previously, PUT3 has four additional homologs in 355
Arabidopsis, which although not found in our yeast screen may add a level of redundancy to this 356
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transporter family and should be assessed for their contribution to the transport of vitamin B1 in 357
planta. Interestingly, the Arabidopsis PUT family appears to have a divergent pattern of tissue 358
expression as assessed by RT-PCR (Mulangi et al., 2012), as well as divergent intracellular 359
localization patterns (Li et al., 2013), which may suggest specialization in a spatial manner. 360
Notwithstanding, the small deficit of B1 vitamers observed in rmv1 may contribute to the stunted 361
root phenotype but is likely to have a stronger contribution from the disruption in polyamine 362
homeostasis (see below). 363
In contrast to vitamin B1, polyamines can be biosynthesized and interconverted ubiquitously in 364
tissues (Urano et al., 2003) including that of the phloem (Pommerrenig et al., 2011). Nonetheless, 365
their involvement in diverse cellular activities warrants that their content is carefully regulated to 366
maintain cellular homeostasis. Intercellular transport is an important part of this process and is 367
validated here through the characterization of the role of PUT3 in phloem transport of polyamines. 368
As for the B1 vitamers, PUT3 can be implicated in phloem loading of polyamines based on the 369
observation that the total polyamine content decreased in phloem exudates of the PUT3 mutant 370
rmv1 and were restored to wild-type levels in the transgenic line rmv1/pPUT3:PUT3. Notably, a 371
closer look at the individual polyamines revealed that Put is the most predominant polyamine in 372
phloem exudates and was considerably decreased along with its polyamine derivatives, Spd and 373
Spm in the rmv1 mutant line. Therefore, PUT3 may either load all three polyamines into the phloem 374
or it may have a preference for Put, which can be metabolized to Spd and Spm by the 375
corresponding synthases in the phloem. On the other hand, there is no change in the levels of Cad in 376
phloem exudates of rmv1 compared to wild-type, implying that PUT3 does not transport this 377
polyamine. This would be consistent with the recent implication of OCT1 in the transport of Cad 378
(Strohm et al., 2015) but remains to be verified in planta. 379
The striking reduction in total polyamine content in the root tissue of rmv1 can be used to 380
provide a molecular explanation for the stunted root growth observed. It has long been 381
demonstrated that polyamines play a major role in cell proliferation and cell division (Fariduddin et 382
al., 2013, Galston & Kaur-Sawhney, 1987, Jang et al., 2002, Kaur-Sawhney et al., 2003). Moreover, 383
alterations in polyamine levels can be correlated with modifications in root development. In 384
particular, increased and decreased levels of the polyamine Spd translate to enhanced and stunted 385
root growth, respectively (Hummel et al., 2002, Jang et al., 2002, Watson et al., 1998). Spd was by 386
far the most abundant polyamine found in roots of Arabidopsis in this study, having been found at 387
approximately 20-fold higher levels than Put, Spm or Cad. Notably, this is in contrast to phloem 388
exudates where Put was the most prevalent polyamine and is significantly reduced in rmv1 but 389
levels are restored to that of wild-type in rmv1/pPUT3:PUT3. Spd levels were strongly reduced in 390
roots of rmv1, thereby contributing the most to the overall deficit in polyamines seen in the roots of 391
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this mutant. Spm levels are also reduced in root tissue of rmv1, which may be due either to reduced 392
transport into the root or a consequence of the deficit in Spd, as it is the precursor to Spm. Both Spd 393
and Spm levels are restored to wild-type levels in the transgenic line rmv1/pPUT3:PUT3, as is the 394
stunted growth phenotype. Taken together, we hypothesize from this study that Put is the 395
predominant polyamine carried in the phloem by PUT3 and as the direct precursor to Spd and Spm 396
may contribute to the pool of the latter polyamines in the root. Notably, there is no significant 397
change in the levels of Put or Cad in root tissue of rmv1 compared to the wild-type. 398
It is striking on the other hand that Put levels decreased in shoots of rmv1 and may account for 399
the delayed bolting phenotype, as elevated Put levels serve as a marker for the transition to 400
flowering (Applewhite et al., 2000, Havelange et al., 1996). Put levels recovered towards that of 401
wild-type in the transgenic line rmv1/pPUT3:PUT3 concomitant with the restoration of the bolting 402
time. Cad levels were also increased in shoots of rmv1 but appeared to be independent of PUT3, as 403
homeostasis was not restored in rmv1/pPUT3:PUT3. It is unlikely that the reduced B1 vitamer 404
levels in the shoots of rmv1 contribute to the delayed bolting time, as foliar application of thiamine 405
had no effect on bolting time (data not shown). Taken together the changes in polyamine 406
homeostasis upon disruption of PUT3 may account for the growth and developmental phenotypes 407
observed in rmv1. 408
In summary, this study identifies a long sought component of vitamin B1 shoot to root 409
translocation and highlights the necessity of maintaining the balance of two sets of vital 410
metabolites, vitamin B1 and polyamines as a function of PUT3, and the importance of their 411
appropriate tissue distribution for proper growth and development in plants. 412
413
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MATERIALS AND METHODS 414
Yeast studies 415
The complementation screen was performed employing the Saccharomyces cerevisiae knock out 416
mutant CVY4 (MATα his3Δ1 leu2Δ0 lys2Δ0 ura3Δ0 thi7Δ::kanMX4 thi71Δ::LEU2 thi72Δ::LYS2 417
thi4Δ::his5+) deficient in the biosynthesis and transport of vitamin B1 (Vogl et al., 2008) and which 418
only grows in the presence of high concentrations of thiamine (≥ 120 µM). The strain was 419
transformed with an Arabidopsis cDNA expression library (Minet et al., 1992) and transformants 420
were selected on media containing 1.2 µM thiamine. S. cerevisiae BY4742 (MATα his3Δ1 leu2Δ0 421
lys2Δ0 ura3Δ0) was used as the wild-type strain. Synthetic dextrose medium lacking vitamin B1 422
and uracil (Formedium, U.K.) and containing 2% glucose was used as the basic growth medium and 423
supplemented with the indicated concentrations of thiamine. The cDNA corresponding to 424
Arabidopsis PUT3 was amplified using the primer pairs listed in Supplemental Table S1 and after 425
cloning by homologous recombination into pGREG506-TEF (Jansen et al., 2005) to generate 426
pGREG506-TEF-PUT3 was used for the analysis shown in Fig. 1. Yeast uptake assays were carried 427
out with strain CVY3 (thi10-1Δ::KanMX thi71Δ::LEU2 thi72Δ::LYS2) (Vogl et al., 2008) 428
transformed with pGREG506-TEF-PUT3 or pGREG506-TEF as control, essentially as described by 429
(Stolz & Vielreicher, 2003). Notably, in contrast to strain CVY4, the THI4 gene is not disrupted in 430
strain CVY3, which can therefore grow in the absence of thiamine supplementation making it 431
suitable for uptake studies. Briefly, cells were grown to mid-logarithmic phase in SD-URA medium 432
(Formedium, U.K.) containing 2% glucose, 0.67% yeast nitrogen base and amino acids, washed 433
twice in water and resuspended in citrate/phosphate buffer at pH 5.5. Five hundred µl of cells (at 434
0.5 OD600 units/ml) were incubated at 30°C and energized with 1% (w/v) glucose one minute prior 435
to starting the experiment. Then, 5 µl of a mixture of tritiated thiamine or TDP (both at 20 Ci mmol-436 1; American Radiolabeled Chemicals, USA) and unlabeled thiamine or TDP at 500 µM were added 437
to give a final concentration of 5 µM (specific activity 0.1 nCi µl-1). At given times, 90 µl aliquots 438
were withdrawn, diluted with 5 ml of water and filtered through GN-6 metricel membrane filters 439
(0.45 µm pore size, Pall Corporation, USA). After washing with excess water, the radioactivity in 440
the filters was quantified in 4 ml Emulsifier Safe scintillation cocktail (Perkin Elmer, USA) in a 441
Beckman LS6500 liquid scintillation counter for 5 minutes. Uptake velocities were determined 442
from the slope of the linear fit of time points covering a period of 10 min after substrate addition. 443
The optimum pH of PUT3 was determined with citrate:phosphate buffers adjusted to the indicated 444
values. Competitors or inhibitors were all used at 20-fold excess (100 µM final concentration), 445
tested at pH 5.5 and added 30 s before starting the experiment. The KM value was determined with 446
substrate solutions containing a constant amount of labeled thiamine or TDP and various 447
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concentrations of unlabeled thiamine or TDP. The KM value was calculated from a Michaelis-448
Menten plot. The energy requirement of thiamine uptake was determined in the absence or presence 449
of 1% (w/v) glucose. The protonophore carbonyl cyanide m-chlorophenylhydrazone was used at a 450
final concentration of 100 µM. It was added 2 min before the labeled substrate and tested in assays 451
that also contained 1% (w/v) D-glucose. 452
453
Generation of plant material and growth conditions 454
The mutant line used was GT_3.3436 recently annotated as rmv1 (Fujita et al., 2012), obtained 455
from the European Arabidopsis Stock Centre and isolated to homozygosity (primer pairs used are 456
given in Supplemental Table S1), as well as its corresponding wild-type (Ler-1). The cloning of 457
PUT3 for plant transformation was carried out by amplification of the full-length sequence from 458
complementary DNA using the primer pairs PUT3.attB1.F/PUT3.attB2.R (Supplemental Table S1). 459
The resulting PCR product were used to generate pENTR221-PUT3 Gateway®-compatible vectors 460
(Life Technologies, Europe). PUT3 was recombined into the pUBC-YFP-DEST vector (Grefen et 461
al., 2010) to generate UBQ:PUT3-YFP. The UBQ10 promoter was replaced by an EcoRI/NcoI 462
restriction/ligation with the 850 bp intergenic region upstream of the PUT3 start codon, amplified 463
from genomic DNA using the primer pairs promPUT3:PUT3.EcoR1.F and promPUT3:PUT3.R, 464
indicated in Supplemental Table S1, to generate promPUT3:PUT3-YFP for complementation of 465
rmv1. For GUS expression, the 850 bp region upstream of the PUT3 start codon was amplified by 466
PCR from genomic DNA using primer pairs promPUT3.SalI.F and promPUT3.NcoI.R, inserted 467
into the pENTR/D-TOPO vector (Life Technologies, Europe) followed by recombination upstream 468
of the GUS coding sequence of pMDC162 (Curtis & Grossniklaus, 2003) to generate pPUT3:GUS. 469
Agrobacterium-mediated transformation of Arabidopsis by the floral dip method was used (Clough 470
& Bent, 1998). For PUT3 subcellular localization, UBQ:PUT3-YFP was used. Transient expression 471
in Arabidopsis mesophyll protoplasts was performed essentially as described in (Szydlowski et al., 472
2013) using 3- to 4-week-old plants maintained on half-strength Murashige and Skoog (Murashige 473
& Skoog, 1962) medium (Duchefa, Holland) containing 1% sucrose grown under 100 µmol 474
photons.m-2 s-1 for 16 hours at 22°C and 8 hours dark at 18°C with some modifications: incubation 475
in the enzyme solution was performed overnight, in the dark, and without agitation. Cells were 476
allowed to recover 24-48 hours before analysis by confocal laser scanning microscopy (Leica 477
Microsystems, Germany) using an ArKr laser at 488 nm. YFP fluorescence was recorded between 478
503 and 550 nm. In all cases, transformants were selected on the appropriate antibiotic, either 479
kanamycin or hygromycin (50 mg l-1), followed by segregation analysis to isolate lines with a single 480
insertion and were confirmed by PCR analysis and sequencing (Microsynth, Switzerland). Unless 481
stated otherwise, plants were grown either on soil or in sterile culture plates (after surface 482
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sterilization) on half-strength Murashige and Skoog medium (Murashige & Skoog, 1962) under 483
standard growth conditions (150 µmol photons.m-2 s-1 for 8 hours at 22°C and 16 hours dark at 484
18°C). 485
486
Gene expression analyses 487
Histochemical GUS expression analyses was carried out essentially as described by (Boycheva 488
et al., 2015). Images were captured with a Leica MZ16 stereomicroscope equipped with an Infinity 489
2 digital camera (Leica Microsystems, Germany). To visualize cross-sections of GUS stained 490
seedlings, they were fixed for 5 hours at room temperature in 100 mM phosphate buffer (pH 7.2) 491
supplemented with 4% formaldehyde and 1% glutaraldehyde, followed by extensive washing in 492
phosphate buffer at 4°C, embedded in 1.5% agarose and dehydrated in a graded ethanol series 493
(50%, 70%, 90% and 3 times in 100% ethanol) in steps of 20 min each. Samples were then 494
progressively infiltrated with Technovit 7100 resin (Heraeus, Germany) supplemented with 1% 495
(w/v) hardener I (benzoyl peroxide) in three separate steps using different mixtures with ethanol at 496
50%, 33% and 0% respectively), then embedded in moulds filled with embedding medium (1 part 497
of hardener II mixed with 11 parts of infiltration medium), left for 30 min at room temperature and 498
then at 60°C for an additional 30 min until complete polymerization. Serial cross sections of 4 µm 499
thickness were prepared using a Leica Ultracut UCT microtome (Leica Microsystems, Switzerland) 500
equipped with glass knives. The sections were collected on superfrost glass slides and 501
counterstained for cell walls with 0.05% ruthenium red. Roots were observed using a Nikon eclipse 502
80i microscope (Nikon, Japan) and pictures were taken with a Nikon Digital Camera Sight DS-Fi-1 503
(Nikon, Japan). 504
For quantification of RNA, total RNA was extracted from plant samples using the NucleoSpin® 505
RNA Plant Kit (Macherey-Nagel, Germany) following the manufacturer’s protocols and treated 506
with RNase-free DNase (Promega, Switzerland) to remove traces of DNA. RNA (2 μg) was 507
reverse-transcribed into complementary DNA using the Superscript II Reverse Transcriptase and 508
oligo(dT)20 primers (Life Technologies, Europe) according to the manufacturer’s recommendations 509
and stored at -20°C. Quantification analyses were performed with a 7900 HT Fast Real-Time PCR 510
system using the Power SYBR® Green PCR Master Mix (Applied Biosystems, USA). Relative 511
mRNA abundance was calculated using the comparative ΔCt method and normalized against the 512
housekeeping gene UBC21 (At5g25760). The list of primer pairs used is given in Supplemental 513
Table S1. 514
515
Phloem exudate collection 516
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Six-week old Arabidopsis plants were used to collect phloem exudates essentially as described in 517
(Tetyuk et al., 2013) with minor modifications. Rosette leaf numbers 8-15 were used and exudates 518
collected in doubly distilled water spiked with internal standards pyrithiamine or 519
hexamethylenediamine for B1 vitamer or polyamine determination, respectively, after EDTA 520
treatment. Exudates were collected for 5 hours and then lyophilized. Samples were resuspended in 521
doubly distilled water for metabolite determination and normalized to the protein content (Bradford, 522
1976). 523
524
Determination of vitamin B1 and polyamine content 525
B1 vitamer content was carried out as described in (Moulin et al., 2013) with the exception that 526
Arabidopsis tissues (50-100 mg) were used as indicated, extracted in 1% trichloroacetic acid (v/v) 527
and pyrithiamine was used as an internal standard. Soluble polyamines were extracted and their 528
conjugates hydrolyzed as described in (Fontaniella et al., 2001) with minor modifications. Briefly, 529
free polyamines were isolated from plant extracts or phloem exudates by mixing with an equal 530
volume of doubly distilled water and directly derivatized. Conjugated polyamines were first 531
hydrolysed to free polyamines by treatment with hydrochloric acid for 18 hours at room 532
temperature and the pH was raised to ≅12. Derivatization was performed by mixing samples with 533
two volumes of a saturated sodium carbonate solution, followed by four volumes of 7.5 mg ml-1 534
dansyl chloride in 98% (v/v) acetone and incubation in darkness for 1 hour at 60°C; supplemented 535
with one volume of 100 mg ml-1 L-proline and incubated for a further 30 min at room temperature. 536
Five volumes of ethyl acetate were then added, centrifuged for 5 min and the supernatant was 537
lyophilized. Samples were resuspended in methanol before analysis. Separation was performed on a 538
C18 Ultrasphere column (250 mm x 4.6 mm, 2.5 μm, Hichrom, UK) under the following conditions: 539
Solvent A = doubly distilled water; Solvent B = 100% methanol; 60-95% B in 23 min, 90-100% B 540
in 2 min, 100% B for 5 min, returned to 60% B in 1 min and re-equilibrated for an additional 9 min 541
at a flow rate of 1.0 ml min-1 and 27°C. Dansylated polyamines were identified by fluorescence 542
(λex=365 nm; λem=515 nm) and quantified by comparison with commercial standards. 543
544
Arabidopsis micrografting 545
Grafting of young Arabidopsis seedlings was carried out according to the methods described in 546
(Bainbridge et al., 2006) and (Marsch-Martinez et al., 2013) with minor modifications. Seeds were 547
surface-sterilized, plated on half-strength Murashige and Skoog medium (Murashige & Skoog, 548
1962) (Duchefa, Holland) containing 0.8% (w/v) agar and stratified for 4 days in the dark at 4°C, 549
then plates were incubated vertically in the dark at 28°C for an additional 2 days to promote 550
hypocotyl etiolation before being moved to standard growth conditions (150 µmol photons.m-2 s-1 551
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for 8 hours at 22°C and 16 hours dark at 18°C). Grafting was performed under sterile conditions 4-5 552
days after germination using a binocular stereoscope. Hypocotyls were cut using a sharp razor blade 553
and freshly cut scions and rootstocks were moved to a new plate, aligned and joined. Sterile silicon 554
tubing with an internal diameter of 0.3 mm (HelixMark, Germany) was cut in half longitudinally 555
and transversely into segments of about 2 mm, laid on top of the union site of the grafted seedling 556
and gently pushed so that it would adhere tightly to both the reconstituted hypocotyl and the gel 557
surface. Plates were then placed vertically and plants were allowed to heal and grow under standard 558
conditions for an additional 5-7 days before grafting efficiency was evaluated. The use of C-shaped 559
sheaths represents an intermediate solution between collar and collar-free grafting procedures in 560
which scions and rootstocks are less damaged during manipulation and more precisely aligned 561
compared to when they are forced into a solid collar, while maintaining the presence of a solid cast 562
in addition to the gel surface, thus limiting movement of the two extremities during the healing 563
process. 564
565
Sequence data from this article are as follows: At5g05630 (PUT3/RMV1), At5g25760 (UBC21), 566
At1g13320 (GAPDH), At1g13320 (PP2AA3), At5g54770 (THI1), At1g22940 (TH1). 567
568
Supplemental Data 569
The following supplemental materials are available: 570
Supplemental Figure S1. Simplified schemes of thiamine and polyamine biosynthesis in plants. 571
Supplemental Figure S2. Optimum pH and TDP competition assays in yeast. 572
Supplemental Figure S3. Histochemical localization of pPUT3-GUS expression activity. 573
Supplemental Figure S4. Subcellular localization of PUT3-YFP to the plasma membrane. 574
Supplemental Figure S5. Proportion of B1 vitamers in phloem exudates compared to leaves. 575
Supplemental Figure S6. qPCR of PUT3 expression in rmv1 versus wild-type. 576
Supplemental Table S1. List of oligonucleotide primers used in this study. 577
578
ACKNOWLEDGMENTS 579
We thank the European Arabidopsis Stock Centre (NASC) for seeds of line GT_3_3436. We are 580
also indebted to Mireille De Meyer-Fague and Christian Megies for technical support. 581
582
AUTHOR CONTRIBUTIONS 583
T.B.F. conceived the study. All authors designed and performed various aspects of the research as 584
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well as analyzing and interpreting the data. T.B.F. wrote the paper with assistance from J.M., E.G. 585
and N.S. 586
587
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FIGURE LEGENDS 588
Figure 1. Identification of an Arabidopsis locus that mediates transport of thiamine in yeast. A, 589
Complementation of S. cerevisiae CVY4 that is unable to biosynthesize or transport thiamine with 590
the Arabidopsis locus At5g05630 (PUT3). Pictures were captured after 3 days of growth on 591
synthetic dextrose medium supplemented with the indicated thiamine concentrations. The 592
individual rows of yeast growth represent 10-fold serial dilutions of wild-type (WT, BY4742), 593
CVY4, or CVY4 transformed with PUT3. B, Cartoon of the predicted topology of PUT3 as 594
determined by TMpred (http://www.ch.embnet.org/software/TMPRED_form.html). C, Time-course 595
of thiamine (■) or thiamine diphosphate (□) transport (5 μM each) by S. cerevisiae CVY3 harboring 596
PUT3 in citrate-phosphate buffer pH 5.5. S. cerevisiae CVY3 transformed with the empty vector 597
serves as control (). D, Representative Michaelis-Menten plot (f(x)=Vmax*X/(KM+X)) of the rates 598
of thiamine (Thi) uptake as a function of the indicated concentrations of substrate. E, as in (D) but 599
rates are as a function of the indicated concentrations of thiamine diphosphate (TDP). F, 600
Competition studies with the thiamine precursors hydroxyethylthiazole (HET), 601
hydroxymethylpyrimidine (HMP) or the anti-vitamin pyrithiamine (Pyr), or B1 vitamers thiamine 602
(Thi), thiamine monophosphate (TMP) or TDP. TDP uptake activity was determined at a 603
concentration of 5 μM in the presence of a 20-fold excess of competitor. Activities are expressed as 604
a percentage (% activity) compared with the activity measured with TDP alone (control). EV refers 605
to the empty vector. G, as in (F) but measured with spermidine as the competitor. H, Energy 606
requirement of PUT3 uptake activity in yeast. The assays were performed as described in (C) in the 607
absence or presence of 1% (w/v) D-glucose (control). The protonophore carbonyl cyanide 3-608
chlorophenylhydrazone (CCCP) was added to a final concentration of 100 μM 2 min before the 609
labeled substrate. The data suggest that PUT3 is a proton symporter. For (C)-(H) values shown are 610
the mean ± S.D from ≥ 3 independent experiments. 611
612
Figure 2. PUT3 is localized to the phloem. A, Histochemical localization of GUS activity in 613
Arabidopsis. Representative images of Arabidopsis expressing GUS under the control of the 614
promoter of PUT3: 7-day old whole seedling (left); enlarged image of a mature rosette leaf margin 615
(top center), differentiation zone of a mature root (top right) and 7-day old seedling root tip (bottom 616
right). B, Transverse section of the root of a GUS stained transgenic seedling (left). Arrows point to 617
the position of the phloem, whereas arrowheads indicate the position of the xylem axis. The scale 618
bar represents 50 μm. A scheme of the cross-sectional layers observed is illustrated on the right. 619
620
Figure 3. Transport of B1 vitamers in the phloem requires PUT3. A, Representative HPLC profile 621
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23
of B1 vitamers in phloem exudates (PEs) collected from Arabidopsis leaf petioles. The 622
commercially available B1 standards (Stds) are thiamine diphosphate (TDP), thiamine 623
monophosphate (TMP) and thiamine (Thi). The chemical derivative pyrithiamine (Pyr) was used as 624
an internal standard. Two pmol of each compound was injected. B, Quantification of the B1 vitamer 625
content of phloem exudates of rmv1 and the complementation line rmv1/pPUT3:PUT3 versus wild-626
type (WT). Values are the average of four biological replicates with error bars representing SD. 627
Statistically significant changes for total B1 vitamers compared to wild-type were calculated by a 628
two tailed Student’s t-test for P < 0.05 and are indicated by an asterisk. 629
630
Figure 4. Transport of polyamines in the phloem requires PUT3. A, Representative HPLC profile 631
of polyamines in phloem exudates (PEs) collected from Arabidopsis leaf petioles. The 632
commercially available standards (Stds) used are putrescine (Put, 8 pmol), cadaverine (Cad, 2 633
pmol), spermidine (Spd, 40 pmol), spermine (Spm, 4 pmol), the polyamine precursor agmatine 634
(Agm, 20 pmol) and the degradation product 1,3-diaminopropane (Dap, 8 pmol). 635
Hexamethylenediamine (Hdm, 2 pmol) was used as an internal standard. B, Quantification of the 636
polyamine contents of phloem exudates from rmv1 and the complementation line 637
rmv1/pPUT3:PUT3 versus wild-type (WT). C, Quantification of the precursor Agm, the 638
degradation product Dap could not be detected. The values for (B) and (C) are the average of four 639
biological replicates with errors bars representing SD. Statistically significant changes for total 640
polyamines compared to wild-type were calculated by a two tailed Student’s t-test for P < 0.05 and 641
are indicated by an asterisk. 642
643
Figure 5. PUT3 is required for proper root and timely reproductive development in Arabidopsis. A, 644
Representative photographs of 12-day old seedlings illustrating root growth impairment of rmv1 645
compared to the respective wild-type (WT) growing vertically in culture. Complementation of the 646
phenotype is observed in transgenic line rmv1/pPUT3:PUT3. B, Root growth rate of the same lines 647
shown in (A). C, Photographs of the plant lines as in (A) grown on soil 65-days after germination, 648
illustrating the late bolting phenotype of rmv1 compared to WT but which recovers in 649
rmv1/pPUT3:PUT3. D, Bolting time of soil grown lines as indicated. E, Representative 650
photographs of the lines as indicated during the late vegetative stage. Pictures were captured 55-651
days after germination. F, Number of rosette leaves at the time of bolting illustrating the increased 652
number of leaves in rmv1 but which returns to that of WT in rmv1/pPUT3:PUT3. In the case of (B), 653
(D) and (F), values shown are the mean ± SD from ≥ three independent experiments. Statistically 654
significant changes compared to wild-type were calculated by a two tailed Student’s t-test for P < 655
0.05 and are indicated by an asterisk. In all cases, plants were grown under an 8-hour photoperiod 656
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24
(150 µmol photons.m-2 s-1 at 22°C) and 16 hours of darkness at 18°C. 657
658
Figure 6. Micrografting illustrates the importance of long distance transport mediated by PUT3. 659
Representative pictures of micrografts of scion and rootstock of the wild-type (WT) and rmv1 660
genetic combinations as indicated. Pictures were captured 7 days after the procedure from 661
micrografts grown vertically under 150 µmol photons.m-2 s-1 for 8 hours at 22°C and 16 hours dark 662
at 18°C. The scale bar represents 1 cm. 663
664
Figure 7. PUT3 is required for long distance transport of vitamin B1. A, B1 vitamer levels in shoots 665
(S) and roots (R) of 14-day old seedlings of rmv1 compared to wild-type (WT) and the transgenic 666
line rmv1/pPUT3:PUT3. The vitamers measured are thiamine diphosphate (TDP), thiamine 667
monophosphate (TMP) and thiamine (Thi). Values shown are the mean ± SD from ≥ four 668
independent experiments. Significant differences of total B1 vitamer contents were determined by 669
one-way ANOVA (P < 0.05). B, Micrografting of wild-type (WT), rmv1 and the thiamine 670
biosynthesis mutant th1-201 as indicated. Pictures were captured 7 days after the procedure from 671
micrografts grown vertically under 150 µmol photons.m-2 s-1 for 8 hours at 22°C and 16 hours dark 672
at 18°C. The scale bar represents 1 cm. 673
674
Figure 8. PUT3 is required for long distance transport of polyamines. A, Total polyamine levels in 675
shoots (S) and roots (R) of 14-day old seedlings of rmv1 compared to wild-type (WT) and the 676
transgenic line rmv1/pPUT3:PUT3. B-E, Levels of the individual polyamines cadaverine (Cad), 677
putrescine (Put), spermidine (Spd) and spermine (Spm) of the same samples shown in (A). The 678
values shown are the mean ± SD from four biological replicates. Significant differences for each 679
polyamine were determined by a one-way ANOVA (P < 0.05). In all cases, plants were grown 680
under an 8-hour photoperiod (150 µmol photons.m-2 s-1 at 22°C) and 16 hours of darkness at 18°C. 681
682
683
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B
N-term (1) C-term (490)
outside
inside
PUT3
A 120 µM
CVY4
1.2 µM 0 µM Thiamine
12 µM
WT
CVY4 + PUT3
EV
Control + Thi
+ TMP
+ TDP + Pyr
+ HMP + HET
0 20 40 60 80 100 120
% Activity
0
40
80
120
160
200
0 5 10
E
pmol
vita
mer
.OD
cel
ls-1
Time (min)
F
0
50
100
150
0 50 100 TDP (µM)
pmol
.min
-1.O
D c
ells
-1
C D
Thi (µM)
pmol
.min
-1.O
D c
ells
-1 % Activity
EV
Control
Spermidine
0 20 40 60 80 100 120 140
H
G
+ CCCP
Control
- Glucose
0 20 40 60 80 100 120
% Activity
0
50
100
150
0 50 100
Figure 1. Identification of an Arabidopsis locus that mediates transport of thiamine in yeast. A, Complementation of S. cerevisiae CVY4 that is unable to biosynthesize or transport thiamine with the Arabidopsis locus At5g05630 (PUT3). Pictures were captured after 3 days of growth on synthetic dextrose medium supplemented with the indicated thiamine concentrations. The individual rows of yeast growth represent 10-fold serial dilutions of wild-type (WT, BY4742), CVY4, or CVY4 transformed with PUT3. B, Cartoon of the predicted topology of PUT3 as determined by TMpred (http://www.ch.embnet.org/software/TMPRED_form.html). C, Time-course of thiamine ( ) or thiamine diphosphate ( ) transport (5 μM each) by S. cerevisiae CVY3 harboring PUT3 in citrate-phosphate buffer pH 5.5. S. cerevisiae CVY3 transformed with the empty vector serves as control ( ). D, Representative Michaelis-Menten plot (f(x)=Vmax*X/(KM+X)) of the rates of thiamine (Thi) uptake as a function of the indicated concentrations of substrate. E, as in (D) but rates are as a function of the indicated concentrations of thiamine diphosphate (TDP). F, Competition studies with the thiamine precursors hydroxyethylthiazole (HET), hydroxymethylpyrimidine (HMP) or the anti-vitamin pyrithiamine (Pyr), or B1 vitamers thiamine (Thi), thiamine monophosphate (TMP) or TDP. TDP uptake activity was determined at a concentration of 5 μM in the presence of a 20-fold excess of competitor. Activities are expressed as a percentage (% activity) compared with the activity measured with TDP alone (control). EV refers to the empty vector. G, as in (F) but measured with spermidine as the competitor. H, Energy requirement of PUT3 uptake activity in yeast. The assays were performed as described in (C) in the absence or presence of 1% (w/v) D-glucose (control). The protonophore carbonyl cyanide 3-chlorophenylhydrazone (CCCP) was added to a final concentration of 100 µM 2 min before the labeled substrate. The data suggest that PUT3 is a proton symporter. For (C)-(H) values shown are the mean ± S.D from 3 independent experiments.
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A
pPU
T3:G
US Epidermis
Cortex
Endodermis
Phloem Xylem
B
Figure 2. PUT3 is localized to the phloem. A, Histochemical localization of GUS activity in Arabidopsis. Representative images of Arabidopsis expressing GUS under the control of the promoter of PUT3: 7-day old whole seedling (left); enlarged image of a mature rosette leaf margin (top center), differentiation zone of a mature root (top right) and 7-day old seedling root tip (bottom right). B, Transverse section of the root of a GUS stained transgenic seedling (left). Arrows point to the position of the phloem, whereas arrowheads indicate the position of the xylem axis. The scale bar represents 50 mm. A scheme of the cross-sectional layers observed is illustrated on the right.
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A
Time (min) 0 5 10 15 20 25
0
100
200
300
400 500
PEs Stds
Fluo
resc
ence
uni
ts
TDP TMP Thi
Pyr
B
0.0
0.4
0.8
1.2
1.6
2.0 TDP TMP Thi
WT rmv1/pPUT3:PUT3
rmv1
Figure 3. Transport of B1 vitamers in the phloem requires PUT3. A, Representative HPLC profile of B1 vitamers in phloem exudates (PEs) collected from Arabidopsis leaf petioles. The commercially available B1 standards (Stds) are thiamine diphosphate (TDP), thiamine monophosphate (TMP) and thiamine (Thi). The chemical derivative pyrithiamine (Pyr) was used as an internal standard. Two pmol of each compound was injected. B, Quantification of the B1 vitamer content of phloem exudates of rmv1 and the complementation line rmv1/pPUT3:PUT3 versus wild-type (WT). Values are the average of four biological replicates with error bars representing SD. Statistically significant changes for total B1 vitamers compared to wild-type were calculated by a two tailed Student’s t-test for P < 0.05 and are indicated by an asterisk.
*
pmol
µg
prot
ein-
1
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Time (min) 0 5 10 15 20 25
0 30
250
500
750
PEs Stds Fl
uore
scen
ce u
nits
Agm Dap Put
Cad
Spd
Hdm
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Figure 4. Transport of polyamines in the phloem requires PUT3. A, Representative HPLC profile of polyamines in phloem exudates (PEs) collected from Arabidopsis leaf petioles. The commercially available standards (Stds) used are putrescine (Put, 8 pmol), cadaverine (Cad, 2 pmol), spermidine (Spd, 40 pmol), spermine (Spm, 4 pmol), the polyamine precursor agmatine (Agm, 20 pmol) and the degradation product 1,3-diaminopropane (Dap, 8 pmol). Hexamethylenediamine (Hdm, 2 pmol) was used as an internal standard. B, Quantification of the polyamine contents of phloem exudates from rmv1 and the complementation line rmv1/pPUT3:PUT3 versus wild-type (WT). C, Quantification of the precursor Agm, the degradation product Dap could not be detected. The values for (B) and (C) are the average of 4 biological replicates with errors bars representing SD. Statistically significant changes for total polyamines compared to wild-type were calculated by a two tailed Student’s t-test for P < 0.05 and are indicated by an asterisk.
*
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Figure 5. PUT3 is required for proper root and timely reproductive development in Arabidopsis. A, Representative photographs of 12-day old seedlings illustrating root growth impairment of rmv1 compared to the respective wild-type (WT) growing vertically in culture. Complementation of the phenotype is observed in transgenic line rmv1/pPUT3:PUT3. B, Root growth rate of the same lines shown in (A). C, Photographs of the plant lines as in (A) grown on soil 65-days after germination, illustrating the late bolting phenotype of rmv1 compared to WT but which recovers in rmv1/pPUT3:PUT3. D, Bolting time of soil grown lines as indicated. E, Representative photographs of the lines as indicated during the late vegetative stage. Pictures were captured 55-days after germination. F, Number of rosette leaves at the time of bolting illustrating the increased number of leaves in rmv1 but which returns to that of WT in rmv1/pPUT3:PUT3. In the case of (B), (D) and (F), values shown are the mean ± SD from ≥ 3 independent experiments. Statistically significant changes compared to wild-type were calculated by a two tailed Student’s t-test for P < 0.05 and are indicated by an asterisk. In all cases, plants were grown under an 8-hour photoperiod (150 µmol photons.m-2 s-1 at 22°C) and 16 hours of darkness at 18°C.
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rmv1
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Figure 6. Micrografting illustrates the importance of long distance transport mediated by PUT3. Representative pictures of micrografts of scion and rootstock of the wild-type (WT) and rmv1 genetic combinations as indicated. Pictures were captured 7 days after the procedure from micrografts grown vertically under 150 µmol photons.m-2 s-1 for 8 hours at 22°C and 16 hours dark at 18°C. The scale bar represents 1 cm.
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Figure 7. PUT3 is required for long distance transport of vitamin B1. A, B1 vitamer levels in shoots (S) and roots (R) of 14-day old seedlings of rmv1 compared to wild-type (WT) and the transgenic line rmv1/pPUT3:PUT3. The vitamers measured are thiamine diphosphate (TDP), thiamine monophosphate (TMP) and thiamine (Thi). Values shown are the mean ± SD from ≥ 4 independent experiments. Significant differences of total B1 vitamer contents were determined by one-way ANOVA (p < 0.05). B, Micrografting of wild-type (WT), rmv1 and the thiamine biosynthesis mutant th1-201 as indicated. Pictures were captured 7 days after the procedure from micrografts grown vertically under 150 µmol photons.m-2 s-1 for 8 hours at 22°C and 16 hours dark at 18°C. The scale bar represents 1 cm.
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A B C
Figure 8. PUT3 is required for long distance transport of polyamines. A, Total polyamine levels in shoots (S) and roots (R) of 14-day old seedlings of rmv1 compared to wild-type (WT) and the transgenic line rmv1/pPUT3:PUT3. B-E, Levels of the individual polyamines cadaverine (Cad), putrescine (Put), spermidine (Spd) and spermine (Spm) of the same samples shown in (A). The values shown are the mean ± SD from four biological replicates. Significant differences for each polyamine were determined by a one-way ANOVA (P < 0.05). In all cases, plants were grown under an 8-hour photoperiod (150 µmol photons.m-2 s-1 at 22°C) and 16 hours of darkness at 18°C.
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