Xiaohong Gao (Middlesex University) – MIRAGE 2011 (developing an embedding visualization toolkit...

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Presentation given at Repository Fringe 2011.

Transcript of Xiaohong Gao (Middlesex University) – MIRAGE 2011 (developing an embedding visualization toolkit...

JISCMIRAGE 2011:

RepoFringe 2011August 4, 2011

Xiaohong (Sharon) GaoYu (Jade) Qian

Middlesex UniversityLondon NW4 4BT

Repository @ http://image.mdx.ac.uk/vin/demo.php.

JISCContents

• Project communications• Dissemination• Progress so far• Next stage of work• Summary• Demo + Technical details

JISC1. Project communication (1)

Built on MIRAGE and MIRAGE 2011 – an FP7 People Marie Curie project WIDTH has been founded, which started on May 16, 2011.

WIDTH – Warehousing images in the digital hospital: interpretation, infrastructure, and integration.

Funding Scheme – staff exchange

project partners – 11 in total

JISC1. Project communication (2)

- Disciplinary-based repository:- IRMA – for bone age assessment (Germany)- http://ganymed.imib.rwth-aachen.de/irma/index_en.php

JISC1. Project communication (3)

- Disciplinary-based repository:- HRCT – for lung (Switzerland)

- http://www.radiologyassistant.nl/en/42d94cd0c326b

JISCJISC1. Project communication (5)

- Semantic-based repository:- i-SCoRe – (Greece)

- http://www.medas.gr:8084/iscore

JISC2. Disseminations

1. X. Gao, Y, Qian, R. Hui, The State of the Art of Medical Imaging Technology: from Creation to Archive and Back, The Open Medical Informatics Journal, 5 : 93-85, 2011.

2. Y. Qian, X. Gao , M. Loomes, R. Comley, B. Barn, R. Hui, Z. Tian, Content-based Retrieval of 3D Medical Images, eTELEMED 2011, February, 2011.

(Best paper award, has been invited to be extended to a journal paper by August 15).

  3. X.W., Gao, Y. Qian, M. Loomes, R. Comley, B. Barn, A. Chapman, J. Rix,

Texture-based 3D image retrieval for medical applications, IADIS e-Health2010, Freiburg, Germany, 29-31, July 2010.

JISC3. Enlarged Project Team

1. Two BioMed MSc students are working with us doing their final dissertations based on MRIAGE database.

Working on the evaluation of classification of images. Working on user studies.

2. One PhD student working on Path planning for neurosurgery.

Who used to be a neur-surgeon.

JISC4. Progress -- 3D Image retrieval (1) – adopting ParaView methodology

JISC4. Uploading images (2)

JISC5. Next stage of work1. Digest 2D/3D Movie data.

2. User evaluations.

3. Reporting.

UltrasonixTABLET Ultrasound scannerMDX Grid Computing

JISC6. Summary

1. From students’ point of view, this repository has widened both their expectations and experiences, helping them to a large extent.

2. For us, the developers, it has been a great experience.

JISC

Technical Aspects of MIRAGE

JISC7. MIRAGE(Middlesex medical Image Repository with a CBIR ArchivinG Environment)

Phase 1(Apr.2009-Sep.2010): MIRAGE – from creation to archiving 1)Middlesex medical image Repository: 100,000 2D images and 100 3D images 2) CBIR archiving environment: GIFT framework Phase 2(Feb-Oct,2011): MIRAGE 2011 – from archiving to creation 1) 3D viewer 2) Upload images

Framework of MIRAGE:

JISCJISC8. 3D Image retrieval (1) - interface

MontageMIRAGE MIRAGE 2011

JISCJISCJISC8. 3D Image retrieval (2) – adopting ParaView methodology

3D retrieval: Evaluate four 3D texture methods and detail in the published conference and journal papers.

JISC9. Image upload(1) - interface

MIRAGE MIRAGE2011

JISC9. Image upload(2) – framework of query by upload image

JISCJISC10: MIRAGE system for wallpaper image retrieval

JISC