Module 4: MouseMine at MGI

Introduction to MouseMine

Online computational platform to access MGI data

flexible queries from templates or fully customizable

queries

iterative refinement

point-and-click visual interface

list analysis tools, including enrichment statistics

integrated and compatible with other InterMOD

platforms (cross-species analysis)

downloadable reports, saving to online accounts or

forwarding to Galaxy

Locating MouseMine

Performing a template query

Search for all GO terms

associated with Mmp9

mmp9

Search results table

sort

removevisibility

column statistics

√

Search results table

Search results table

Iterative result

Filtered to only those GO

associations with “IDA /

Inferred by direct assay”

as the evidence code

Added a column for

positional coordinates

Working with lists

MGI:87853 MGI:1352629 MGI:87874 …

Confirm list matches

List tools 1: view and manipulate

List tools 2: enrichment analysis

widgets

Human disease

(MEDIC) AnatomyMammalian

phenotype

Gene Ontology

(GO)Chromosome

distribution

List tools 3: template quick links

Summary

MouseMine allows straightforward, flexible batch-scale querying of MGI data

Multiple useful list analysis tools

contact mgi-help@jax.org with any questions