FlowJo 中文实用手册

Post on 10-Nov-2015

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description

the chinese version of Flowjo guide, simple but straight forward, explaning the basic of how to use Flowjo, like gating and backgating, worksheet, table and compensation etc.

Transcript of FlowJo 中文实用手册

  • I FlowJo support@flowjochina.com 400-680-5527

    FlowJo FlowJo7.6.5 2012/06/20

    FlowJo ......................................................................................................................................1 FlowJo ...............................................................................................................1 FlowJo(Windows) .........................................................................................................1 FlowJo ...............................................................................................................................5

    FlowJo ......................................................................................................................6 ...........................................................................................6 .........................................................................................................................10

    FlowJo ............................................................................................................13 .................................................................................................13 .....................................................................................................................16 .........................................................................................................................16

    FlowJo ....................................................................................................................18 FlowJo..............................................................................18 FlowJo .........................................................................................................18 .....................................................................................................................................24

    FlowJo ....................................................................................................................27 .........................................................................................................................27 .........................................................................................................................32 .........................................................................................................................35

    FlowJo ............................................................................................................43 .................................................................................................................................43 FlowJo .........................................................................................................44 .........................................................................................................................45

    PatrickUnderline

    PatrickUnderline

    PatrickUnderline

    PatrickUnderline

  • II FlowJo support@flowjochina.com 400-680-5527

    FlowJo ....................................................................................................47 .........................................................................................................................47 FlowJo .................................................................................................48 .................................................................................................51 .........................................................................................................................53

    PatrickUnderline

  • III FlowJo support@flowjochina.com 400-680-5527

  • 1 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJoLeonard HerzenbergFACS

    90FlowJo

    FlowJo

    FlowJo

    1. PC

    Windows XPVistaWindows7

    512MB

    2.

    OSX10.3

    512MB

    FlowJo(Windows)

    http://www.flowjochina.com/content/download

  • 2 FlowJo support@flowjochina.com 400-680-5527

    V7.6.5

    http://www.flowjochina.com/sites/default/files/7.6.5_X32.exe

    FlowJo

    FlowJo

    NEXT

  • 3 FlowJo support@flowjochina.com 400-680-5527

    NEXT

    NEXT

    Install

    Done

  • 4 FlowJo support@flowjochina.com 400-680-5527

    a. DongleFlowJo

    b. Serial NumberUse

    Serial Number

    c. Get Trial LicenseFlowJo

    Use Serial Number

  • 5 FlowJo support@flowjochina.com 400-680-5527

    d. DemoFlowJo

    Run in Demo ModeDemoFlowJoDemo

    FlowJo

    FlowJo

  • 6 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    ,flowjochina

    www.flowjochina.com/sites/default/files/demodata.rar

    3 color compCy5PE comp.fcs

    1. FlowJo

    2. 3 color compFlowJo

  • 7 FlowJo support@flowjochina.com 400-680-5527

    3 color comp3 color

    comp

    Cy5PE comp.fcs

  • 8 FlowJo support@flowjochina.com 400-680-5527

    1) XSSC

    SSC

    2) YFSC

    FSC

    3)

    :

  • 9 FlowJo support@flowjochina.com 400-680-5527

    1) XCy5PE:CD4YHistogram

    2)

    a.

    CD4CD4

  • 10 FlowJo support@flowjochina.com 400-680-5527

    b.

    CD4CD

    a.

    WORDPPT

    b.

    SVG

    PNGEMFJPG

  • 11 FlowJo support@flowjochina.com 400-680-5527

    c. FlowJo

    d.

  • 12 FlowJo support@flowjochina.com 400-680-5527

    e.

    data001.JPGJPG, PNG, GIF, EMF,

    SVG, PDF

    FlowJoPNG

    f.

  • 13 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJo

    FlowJo3-color-experiment931115-

    B02-Sample01.FCS

    1. 3-color-experimentFlowJo

    2. 931115-B02-Sample01.FCS

    XFSCYSSC

  • 14 FlowJo support@flowjochina.com 400-680-5527

    3. XFluor::CD3YFSC

    CD3T

  • 15 FlowJo support@flowjochina.com 400-680-5527

    4. TXCy5PE::CD4Y

    PhyEry::CD8

    Q1CD8CD8+ T

    Q2

    Q3CD4CD4+ T

    Q4

  • 16 FlowJo support@flowjochina.com 400-680-5527

  • 17 FlowJo support@flowjochina.com 400-680-5527

    TREGCD4/CD25/FOXP3SSC vs. CD4

    CD4+CD25 vs. FOXP3

    CD25+/FOXP3+CD4+/CD25+/FOXP3+

    TREG

  • 18 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    FlowJo

    FlowJo

    1.

    2.

    3.

    FlowJo

    FlowJoFlowJo

    4

    http://www.video.flowjochina.com/v75%20Compensation_conv.html

    1. FlowJo

    3 color compCy5PE comp.fcs, FITC

    comp.fcs, PE comp.fcs3-COLOR.FCS

    Cy5PE, FITC, PE

    PatrickHighlight

    PatrickHighlight

    PatrickHighlight

  • 19 FlowJo support@flowjochina.com 400-680-5527

    2.

    Sample

    FlourFITC comp.fcs

  • 20 FlowJo support@flowjochina.com 400-680-5527

    3. 23FlowJo

    4.

    >

  • 21 FlowJo support@flowjochina.com 400-680-5527

    (poor control )FlowJo

    1. 1,2,3

    FlowJoPE

  • 22 FlowJo support@flowjochina.com 400-680-5527

    1) PEcw_Size

    2) Clear

    2.

    1) PEFSC/SSC

  • 23 FlowJo support@flowjochina.com 400-680-5527

    2) XPhyEry::aCD8Y

    Histogram PEPE

    a.

    b.

    3) PE-PE

    PE+

  • 24 FlowJo support@flowjochina.com 400-680-5527

    3. FlowJo

    3-color comp

    >

    0Log

    0

    LogicalFlowJo

    3-color comp3-

    COLOR.FCS

    1. 3-COLOR

    XCD3YCD8

    gate135.1%

  • 25 FlowJo support@flowjochina.com 400-680-5527

    2. XYT

    3. T

    Change transform values

  • 26 FlowJo support@flowjochina.com 400-680-5527

    X-10-30

    a.

    b. FCS3.0FlowJoFCS2.0

    FlowJo

  • 27 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    Titration DataCD8Sample 1

    Sample 2 ~ Sample 82

    1.

    Sample 1

  • 28 FlowJo support@flowjochina.com 400-680-5527

    XFL1-HYHistogram Sample 1

    FL1-H+

    RenameCD8+FL1-H-

    CD8-

    2.

  • 29 FlowJo support@flowjochina.com 400-680-5527

    CD8+

    MedianParameter

    FL1-HCD8FL1-H

  • 30 FlowJo support@flowjochina.com 400-680-5527

    (FL1-H):MedianCD8-CD8

    FL1-H

    3.

    Sample 1Sample 2

    Sample 2Sample

    1

  • 31 FlowJo support@flowjochina.com 400-680-5527

    Sample 1

    Titration Data

    Sample 1

    ALTSample 1

    Titration Data

    Sample 1

  • 32 FlowJo support@flowjochina.com 400-680-5527

    1.

    Sample 1CD8+CD8-

    (FL1-H):Median

  • 33 FlowJo support@flowjochina.com 400-680-5527

    2.

    Keyword

    Antibody Concentration

    OK

    3.

    CD8+ (FL1-H) Median CD8- (FL1-H) MedianCD8

    CD8MFI

    OK

  • 34 FlowJo support@flowjochina.com 400-680-5527

  • 35 FlowJo support@flowjochina.com 400-680-5527

    4.

    MFI

    1MFI1.

    1.

    Sample 1

  • 36 FlowJo support@flowjochina.com 400-680-5527

    FlowJoTitration Data

    FlowJo

  • 37 FlowJo support@flowjochina.com 400-680-5527

    2. (Overlay)

    1

    Titration Data

    (1) Sample 1Sample 2

    Sample 1

    (2) SpecifyControl

    Sample 1Sample 1OK

  • 38 FlowJo support@flowjochina.com 400-680-5527

    (3)

  • 39 FlowJo support@flowjochina.com 400-680-5527

    2

    Titration Data

    (1) Sample 1CTRL

    Sample 1

    Sample 1

  • 40 FlowJo support@flowjochina.com 400-680-5527

    (2)

  • 41 FlowJo support@flowjochina.com 400-680-5527

    (3)

    (4) coloringfilled

    (5)

  • 42 FlowJo support@flowjochina.com 400-680-5527

  • 43 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    Annexin V-FITC/PI

    Annexin V-FITC/PI

    PSVAnnexin V-FITC

    PS

    PSPI

    PS

    AnnexinPI

    Annexin V-FITC/PI

    AnnexinAnnexin, PI

  • 44 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    apoptosisZL-2011-12-20_400.fcs

    1. FlowJo

    XFSC-A,YSSC-A

    2. SSC/FSC

  • 45 FlowJo support@flowjochina.com 400-680-5527

    XFITC,AnnexinV-FITCYPE-Texas,PI

    1.

    2.

    Q1(AnnexinV-FITC)-/PI+

    Q2: (AnnexinV+FITC)+/PI+

    Q3(AnnexinV-FITC)+/PI-

    Q4(AnnexinV-FITC)-/PI-

  • 46 FlowJo support@flowjochina.com 400-680-5527

    Q2+Q3

    AnnexinV

  • 47 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    G1

    SG2MG1S

    DNAG2DNA

    M

    DNAPIPI

    DNARNA

    DNA

    DNA

  • 48 FlowJo support@flowjochina.com 400-680-5527

    FlowJo

    cell cycle 5206.001PI

    1.

    5206.001XFSC-HY

    SSC-H

  • 49 FlowJo support@flowjochina.com 400-680-5527

    2.

    XFL2-W(width)YFL2-A(area)

    BDFL2-A

    FL2-WFL2-AFL2H

    BeckmanXFL3-LIN,PI

    YFL3-PEAK,PI

  • 50 FlowJo support@flowjochina.com 400-680-5527

    3. FlowJo

    G1SG2G1CV

    G2CV

  • 51 FlowJo support@flowjochina.com 400-680-5527

    http://www.flowjochina.com/content/tutorial-video#cellcycle

    1.

    RMS

    RMS(root mean square error)

    RMS3.85

    2.

    WatsonDean-Jett-Fox

    RMSRMS

    Could not fit.

    Watson

    Dean-Jett-Fox

  • 52 FlowJo support@flowjochina.com 400-680-5527

    3.

    G1G2meanCV

    1 G2G12

    G1G2G1

    2(2G1)G2G1G20.5

    2 G1G2

    G1mean

    G1mean

    3 CV

    DNAG1G2CV

    G1 CV

    =G2 CVG2 CV G1 CV

    CVCV

    CV

  • 53 FlowJo support@flowjochina.com 400-680-5527

    1. RMSroot mean square errorRMS

    2. G1G1

    SS

    G2G2

    3. G1G1

    G2G2

    4. CVcoefficient of variationG0/G1

    CVCV

    G1 cvG1G1

    G2 cvG2

    Flowjo

    FlowJo FlJ FlowJo