Post on 23-Dec-2015
Doug Brutlag 2011
Genome Databases
Doug BrutlagProfessor Emeritus of Biochemistry & Medicine
Stanford University School of Medicine
Genomics, Bioinformatics & Medicinehttp://biochem158.stanford.edu/
Doug Brutlag 2011
NCBI Genomeshttp://www.ncbi.nlm.nih.gov/sites/entrez?db=genome
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Eukaryote Genome Projectshttp://www.ncbi.nlm.nih.gov/genomes/leuks.cgi
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Canis lupus familiaris Genomehttp://www.ncbi.nlm.nih.gov/sites/entrez?db=bioproject&cmd=Retrieve&dopt=Overview&list_uids=10726
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NCBI Entrez Genehttp://www.ncbi.nlm.nih.gov/sites/entrez?db=gene
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NCBI Entrez Gene: Human Opsinhttp://www.ncbi.nlm.nih.gov/gene?term=human%20opsin
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Entrez Gene: Human Opsin OPN1MW
http://www.ncbi.nlm.nih.gov/gene/2652
Doug Brutlag 2011
Entrez Gene: Human Opsin OPN1MW
http://www.ncbi.nlm.nih.gov/gene/2652
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MapViewer: Human Opsin OPN1MW
http://www.ncbi.nlm.nih.gov/gene/2652
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Evidence Viewer for OPN1MWhttp://www.ncbi.nlm.nih.gov/sutils/evv.cgi?taxid=9606&contig=NT_167198.1&gene=OPN1MW&lid=2652&from=4366022&to=4380289
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OMIM Home Pagehttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
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Colorblindness in OMIM
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Colorblindness in OMIMhttp://omim.org/entry/303800
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Colorblindness in OMIMhttp://omim.org/entry/303800
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Human Genome Resourceshttp://www.ncbi.nlm.nih.gov/genome/guide/human/
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RefSeqhttp://www.ncbi.nlm.nih.gov/RefSeq/
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RefSeq Genehttp://www.ncbi.nlm.nih.gov/refseq/rsg/
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NCBI UniGenehttp://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene
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NCBI Homologene Databasehttp://www.ncbi.nlm.nih.gov/homologene
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Comparative Genomics
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Ensembl Home Pagehttp://www.ensembl.org/
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EBI Genomes Home Pagehttp://www.ensembl.org/
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Ensembl Human Genomehttp://www.ensembl.org/Homo_sapiens/
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Ensembl Human Opsin Searchhttp://uswest.ensembl.org/Homo_sapiens/Search/Results?species=Homo_sapiens;idx=;q=opsin
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Ensembl Human Opsin Geneshttp://uswest.ensembl.org/Homo_sapiens/Search/Results?species=Homo_sapiens;idx=;q=opsin
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Ensembl Human OPN1MW Gene
http://uswest.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000147380;r=X:153448107-153461633
Doug Brutlag 2011
Ensembl Opsin OPN1MW Gene Location
http://uswest.ensembl.org/Homo_sapiens/Location/View?h=Havana%20gene;r=X:153448107-153461633#r=X:153448109-153461632
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Ensembl OPN1MW Transcriptshttp://uswest.ensembl.org/Homo_sapiens/Location/View?h=Havana%20gene;r=X:153448107-153461633#r=X:153448109-153461632
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Ensembl OPN1MW Opsin Proteinhttp://uswest.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000147380;r=X:153448107-153461633;t=ENST00000369935
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Ensembl Tutorialshttp://uswest.ensembl.org/info/website/tutorials/index.html
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UCSC Genome Home Pagehttp://genome.ucsc.edu/
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UCSC Genome Browserhttp://genome.ucsc.edu/cgi-bin/hgGateway
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UCSC Genome Browserhttp://genome.ucsc.edu/cgi-bin/hgGateway
Doug Brutlag 2011
UCSC Genome Browserhttp://genome.ucsc.edu/cgi-bin/hgTracks?position=chrX:153485203-153499469&hgsid=216983641&knownGene=pack&hgFind.matches=uc004fkd.2,
Doug Brutlag 2011
UCSC Genome Browserhttp://genome.ucsc.edu/cgi-bin/hgTracks?position=chrX:153485203-153499469&hgsid=216983641&knownGene=pack&hgFind.matches=uc004fkd.2,
Doug Brutlag 2011
UCSC Proteome Browserhttp://genome.ucsc.edu/cgi-bin/pbGateway
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UCSC Proteome Browserhttp://genome.ucsc.edu/cgi-bin/pbGateway
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UCSC Help Filehttp://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html